Wall clock time and date at job start Sat Apr 11 2020 06:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.50700 * 120.00330 * 2 1 4 4 C 1.33002 * 119.99601 * 180.02562 * 2 1 3 5 5 C 1.47098 * 120.00020 * 354.75339 * 4 2 1 6 6 O 1.21609 * 120.00102 * 5.04606 * 5 4 2 7 7 N 1.34781 * 119.99755 * 185.04758 * 5 4 2 8 8 C 1.46509 * 119.99742 * 180.02562 * 7 5 4 9 9 H 1.09002 * 109.45586 * 35.02522 * 8 7 5 10 10 C 1.53042 * 109.44513 * 275.05986 * 8 7 5 11 11 C 1.53628 * 109.23575 * 178.49757 * 10 8 7 12 12 N 1.46923 * 108.54338 * 54.85769 * 11 10 8 13 13 C 1.34779 * 120.63108 * 126.36294 * 12 11 10 14 14 O 1.21279 * 120.00220 * 173.91106 * 13 12 11 15 15 C 1.50697 * 119.99810 * 353.92293 * 13 12 11 16 16 S 1.81001 * 109.47056 * 179.97438 * 15 13 12 17 17 C 1.76201 * 100.00143 * 179.97438 * 16 15 13 18 18 H 1.08007 * 119.99931 * 359.97438 * 17 16 15 19 19 C 1.38794 * 120.00306 * 180.02562 * 17 16 15 20 20 N 1.31630 * 120.00176 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 119.99700 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47334 * 270.00003 * 21 19 17 23 23 H 1.48493 * 109.47278 * 30.00391 * 21 19 17 24 24 H 1.48503 * 109.47136 * 150.00503 * 21 19 17 25 25 C 1.46928 * 118.73910 * 306.09289 * 12 11 10 26 26 H 1.09000 * 109.58222 * 294.07378 * 25 12 11 27 27 C 1.52999 * 109.58523 * 173.79178 * 25 12 11 28 28 C 1.53036 * 109.45866 * 154.99846 * 8 7 5 29 29 H 1.09002 * 109.47303 * 244.89905 * 1 2 3 30 30 H 1.09000 * 109.46894 * 4.89308 * 1 2 3 31 31 H 1.08996 * 109.47438 * 124.89620 * 1 2 3 32 32 H 1.09000 * 109.46440 * 269.99745 * 3 2 1 33 33 H 1.08997 * 109.46916 * 30.00049 * 3 2 1 34 34 H 1.08995 * 109.47216 * 150.00162 * 3 2 1 35 35 H 1.07998 * 119.99758 * 174.76172 * 4 2 1 36 36 H 0.96998 * 120.00236 * 0.02562 * 7 5 4 37 37 H 1.08997 * 109.49996 * 298.57363 * 10 8 7 38 38 H 1.09003 * 109.49604 * 58.64138 * 10 8 7 39 39 H 1.08998 * 109.73898 * 295.11833 * 11 10 8 40 40 H 1.09009 * 109.65796 * 174.54838 * 11 10 8 41 41 H 1.08997 * 109.47698 * 59.99571 * 15 13 12 42 42 H 1.09004 * 109.47043 * 299.99368 * 15 13 12 43 43 H 0.97004 * 119.99473 * 179.97438 * 20 19 17 44 44 H 1.08997 * 109.47261 * 65.78330 * 27 25 12 45 45 H 1.08998 * 109.46598 * 185.77757 * 27 25 12 46 46 H 1.09001 * 109.46928 * 305.77426 * 27 25 12 47 47 H 1.09000 * 109.49827 * 61.42046 * 28 8 7 48 48 H 1.08998 * 109.52120 * 301.34166 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1719 -1.1519 -0.0005 5 6 1.4409 -2.4231 0.1154 6 8 0.2248 -2.4271 0.1193 7 7 2.1190 -3.5835 0.2174 8 6 1.3910 -4.8497 0.3322 9 1 0.4787 -4.7992 -0.2622 10 6 1.0309 -5.0991 1.7986 11 6 0.2353 -6.4087 1.9088 12 7 1.0194 -7.4854 1.2888 13 6 1.2933 -8.6154 1.9703 14 8 1.8449 -9.5409 1.4134 15 6 0.9139 -8.7291 3.4243 16 16 1.4098 -10.3527 4.0521 17 6 0.8629 -10.2154 5.7215 18 1 0.3842 -9.3083 6.0600 19 6 1.0481 -11.2724 6.6016 20 7 0.6400 -11.1696 7.8488 21 14 1.8766 -12.8410 6.0162 22 1 0.8495 -13.7790 5.4962 23 1 2.8432 -12.5170 4.9365 24 1 2.5958 -13.4741 7.1508 25 6 1.4943 -7.3093 -0.0905 26 1 0.6419 -7.2778 -0.7691 27 6 2.4097 -8.4749 -0.4705 28 6 2.2710 -5.9920 -0.1802 29 1 -0.3634 -0.4360 0.9306 30 1 -0.3633 1.0239 -0.0877 31 1 -0.3634 -0.5879 -0.8428 32 1 2.4422 1.6196 -1.0277 33 1 1.6715 2.0647 0.5138 34 1 3.2129 1.1747 0.5138 35 1 3.2485 -1.1538 -0.0859 36 1 3.0890 -3.5802 0.2147 37 1 1.9436 -5.1742 2.3897 38 1 0.4240 -4.2732 2.1698 39 1 -0.7176 -6.3052 1.3898 40 1 0.0585 -6.6432 2.9585 41 1 -0.1649 -8.6136 3.5285 42 1 1.4195 -7.9491 3.9938 43 1 0.7692 -11.9086 8.4638 44 1 1.8312 -9.3984 -0.4942 45 1 2.8419 -8.2916 -1.4542 46 1 3.2080 -8.5649 0.2661 47 1 3.1721 -6.0588 0.4295 48 1 2.5469 -5.8022 -1.2175 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074797152.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:06 Heat of formation + Delta-G solvation = -53.286528 kcal Electronic energy + Delta-G solvation = -27273.091817 eV Core-core repulsion = 23454.738657 eV Total energy + Delta-G solvation = -3818.353159 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.69974 -39.84718 -37.54355 -35.81846 -34.66836 -33.23467 -32.43875 -31.53777 -29.20352 -28.35311 -28.00056 -27.20680 -25.60412 -24.41815 -22.62211 -21.68333 -20.87319 -19.40428 -18.80283 -17.61652 -17.24881 -16.61320 -16.09988 -16.06036 -15.46872 -15.26956 -14.96367 -14.70387 -14.41221 -14.35372 -14.18680 -13.90362 -13.63635 -13.43611 -13.24364 -12.87052 -12.79011 -12.67437 -12.52949 -12.37094 -12.19114 -12.03093 -11.95152 -11.85549 -11.75231 -11.28834 -11.22736 -11.11901 -11.00709 -10.86483 -10.57769 -9.88614 -9.85098 -9.59131 -9.17738 -9.00389 -8.83876 -8.55219 -8.48664 -6.91549 -6.28809 -4.00404 1.02496 2.69858 2.84314 2.98846 3.04446 3.18049 3.33019 3.49925 3.58597 4.29174 4.32849 4.40341 4.44412 4.54715 4.63606 4.77447 4.81369 4.86471 5.01574 5.03203 5.04769 5.09003 5.10256 5.21691 5.29077 5.32457 5.39065 5.42220 5.51482 5.54326 5.59617 5.71722 5.72074 5.75183 5.76675 5.83593 5.96363 6.00825 6.10941 6.15394 6.21330 6.26540 6.42109 6.75068 7.27408 7.49200 7.94221 8.01033 8.41793 8.47278 9.17377 10.80407 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019248 B = 0.002196 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.348029 B =12747.064916 C =13692.120269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.030 4.030 3 C -0.128 4.128 4 C -0.241 4.241 5 C 0.546 3.454 6 O -0.541 6.541 7 N -0.725 5.725 8 C 0.148 3.852 9 H 0.090 0.910 10 C -0.144 4.144 11 C 0.111 3.889 12 N -0.617 5.617 13 C 0.535 3.465 14 O -0.511 6.511 15 C -0.124 4.124 16 S -0.142 6.142 17 C -0.521 4.521 18 H 0.088 0.912 19 C 0.095 3.905 20 N -0.880 5.880 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.235 1.235 24 H -0.275 1.275 25 C 0.152 3.848 26 H 0.071 0.929 27 C -0.139 4.139 28 C -0.138 4.138 29 H 0.083 0.917 30 H 0.052 0.948 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.124 0.876 36 H 0.400 0.600 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.270 0.730 44 H 0.083 0.917 45 H 0.041 0.959 46 H 0.067 0.933 47 H 0.074 0.926 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.783 23.067 -18.874 30.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.032 4.032 3 C -0.185 4.185 4 C -0.262 4.262 5 C 0.336 3.664 6 O -0.420 6.420 7 N -0.375 5.375 8 C 0.043 3.957 9 H 0.108 0.892 10 C -0.183 4.183 11 C -0.013 4.013 12 N -0.354 5.354 13 C 0.323 3.677 14 O -0.386 6.386 15 C -0.275 4.275 16 S 0.084 5.916 17 C -0.668 4.668 18 H 0.106 0.894 19 C -0.114 4.114 20 N -0.517 5.517 21 Si 0.682 3.318 22 H -0.192 1.192 23 H -0.159 1.159 24 H -0.200 1.200 25 C 0.048 3.952 26 H 0.089 0.911 27 C -0.196 4.196 28 C -0.177 4.177 29 H 0.101 0.899 30 H 0.071 0.929 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.142 0.858 36 H 0.233 0.767 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.113 0.887 41 H 0.113 0.887 42 H 0.113 0.887 43 H 0.080 0.920 44 H 0.102 0.898 45 H 0.059 0.941 46 H 0.086 0.914 47 H 0.093 0.907 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.718 21.590 -19.512 29.337 hybrid contribution 0.206 0.499 0.836 0.995 sum 3.923 22.089 -18.676 29.191 Atomic orbital electron populations 1.21066 0.90709 1.01209 1.04439 1.22612 0.96998 0.94488 0.89092 1.21037 1.00167 0.94365 1.02926 1.22353 1.00128 0.92029 1.11660 1.18566 0.87423 0.84235 0.76202 1.90785 1.13658 1.87292 1.50293 1.45998 1.10191 1.06083 1.75229 1.20935 0.95982 0.82155 0.96620 0.89228 1.22396 1.01471 0.97833 0.96644 1.21801 0.93894 0.85751 0.99888 1.48178 1.55399 1.17645 1.14167 1.20245 0.77973 0.81401 0.88084 1.90730 1.41187 1.37870 1.68765 1.23371 1.04910 1.04662 0.94517 1.84743 1.79586 1.15274 1.12008 1.22313 1.45316 1.06134 0.93060 0.89433 1.24718 0.94268 0.98343 0.94028 1.69942 1.45103 1.32756 1.03888 0.86727 0.81459 0.83545 0.80058 1.19228 1.15943 1.19986 1.21113 0.96714 0.94688 0.82689 0.91140 1.22211 1.00093 0.97722 0.99554 1.22315 0.99241 0.93964 1.02169 0.89881 0.92913 0.89794 0.90340 0.90798 0.91054 0.85770 0.76650 0.91033 0.90172 0.90996 0.88732 0.88684 0.88651 0.91960 0.89791 0.94056 0.91366 0.90716 0.90238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.94 8.33 36.00 0.30 -0.64 16 2 C -0.03 -0.21 6.11 -101.17 -0.62 -0.83 16 3 C -0.13 -0.54 9.97 36.01 0.36 -0.19 16 4 C -0.24 -1.76 9.63 -37.81 -0.36 -2.13 16 5 C 0.55 5.27 7.69 -12.66 -0.10 5.17 16 6 O -0.54 -6.83 12.76 5.27 0.07 -6.77 16 7 N -0.72 -5.77 5.07 -54.94 -0.28 -6.05 16 8 C 0.15 1.34 2.41 -67.88 -0.16 1.18 16 9 H 0.09 0.94 7.58 -51.93 -0.39 0.54 16 10 C -0.14 -1.43 5.67 -26.38 -0.15 -1.58 16 11 C 0.11 1.22 6.38 -3.49 -0.02 1.20 16 12 N -0.62 -8.20 2.97 -164.96 -0.49 -8.69 16 13 C 0.53 9.37 7.52 -10.99 -0.08 9.29 16 14 O -0.51 -10.32 11.43 5.56 0.06 -10.26 16 15 C -0.12 -2.40 4.51 36.00 0.16 -2.24 16 16 S -0.14 -3.58 18.55 -107.50 -1.99 -5.58 16 17 C -0.52 -14.97 10.04 30.94 0.31 -14.66 16 18 H 0.09 2.63 8.03 -52.48 -0.42 2.21 16 19 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 20 N -0.88 -26.57 13.97 55.49 0.78 -25.79 16 21 Si 0.86 21.77 27.74 -169.99 -4.71 17.06 16 22 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.24 -5.95 6.74 56.52 0.38 -5.57 16 24 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 25 C 0.15 1.71 3.48 -67.60 -0.24 1.47 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 27 C -0.14 -1.78 7.62 37.16 0.28 -1.50 16 28 C -0.14 -1.20 4.85 -26.62 -0.13 -1.33 16 29 H 0.08 0.79 7.36 -51.93 -0.38 0.41 16 30 H 0.05 0.32 7.98 -51.93 -0.41 -0.10 16 31 H 0.08 0.79 7.09 -51.93 -0.37 0.42 16 32 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.27 8.09 -51.93 -0.42 -0.15 16 34 H 0.07 0.25 8.07 -51.93 -0.42 -0.17 16 35 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 36 H 0.40 2.27 8.59 -40.82 -0.35 1.92 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.09 1.08 5.93 -51.92 -0.31 0.77 16 41 H 0.09 1.74 7.69 -51.92 -0.40 1.34 16 42 H 0.10 1.74 7.94 -51.91 -0.41 1.33 16 43 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 44 H 0.08 1.28 6.54 -51.93 -0.34 0.94 16 45 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.07 1.02 6.95 -51.93 -0.36 0.66 16 47 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 392.48 15.07 5.91 5.91 Total: -1.00 -34.13 392.48 -9.15 -43.28 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -7.95 Total: 0.98 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: -0.54 Total: -4.08 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: 0.01 Total: -40.54 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: 0.13 Total: -17.03 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.71 Total: 17.06 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -1.99 Total: -5.58 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.13 -9.15 -43.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074797152.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.011 kcal (2) G-P(sol) polarization free energy of solvation -34.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds