Wall clock time and date at job start Sat Apr 11 2020 06:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.50700 * 120.00330 * 2 1 4 4 C 1.33002 * 119.99601 * 180.02562 * 2 1 3 5 5 C 1.47098 * 120.00020 * 354.75339 * 4 2 1 6 6 O 1.21609 * 120.00102 * 5.04606 * 5 4 2 7 7 N 1.34781 * 119.99755 * 185.04758 * 5 4 2 8 8 C 1.46509 * 119.99742 * 180.02562 * 7 5 4 9 9 H 1.09002 * 109.45586 * 35.02522 * 8 7 5 10 10 C 1.53042 * 109.44513 * 275.05986 * 8 7 5 11 11 C 1.53628 * 109.23575 * 178.49757 * 10 8 7 12 12 N 1.46923 * 108.54338 * 54.85769 * 11 10 8 13 13 C 1.34779 * 120.63108 * 126.36294 * 12 11 10 14 14 O 1.21279 * 120.00220 * 173.91106 * 13 12 11 15 15 C 1.50697 * 119.99810 * 353.92293 * 13 12 11 16 16 S 1.81001 * 109.47056 * 179.97438 * 15 13 12 17 17 C 1.76201 * 100.00143 * 179.97438 * 16 15 13 18 18 H 1.08007 * 119.99931 * 359.97438 * 17 16 15 19 19 C 1.38794 * 120.00306 * 180.02562 * 17 16 15 20 20 N 1.31630 * 120.00176 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 119.99700 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47334 * 270.00003 * 21 19 17 23 23 H 1.48493 * 109.47278 * 30.00391 * 21 19 17 24 24 H 1.48503 * 109.47136 * 150.00503 * 21 19 17 25 25 C 1.46928 * 118.73910 * 306.09289 * 12 11 10 26 26 H 1.09000 * 109.58222 * 294.07378 * 25 12 11 27 27 C 1.52999 * 109.58523 * 173.79178 * 25 12 11 28 28 C 1.53036 * 109.45866 * 154.99846 * 8 7 5 29 29 H 1.09002 * 109.47303 * 244.89905 * 1 2 3 30 30 H 1.09000 * 109.46894 * 4.89308 * 1 2 3 31 31 H 1.08996 * 109.47438 * 124.89620 * 1 2 3 32 32 H 1.09000 * 109.46440 * 269.99745 * 3 2 1 33 33 H 1.08997 * 109.46916 * 30.00049 * 3 2 1 34 34 H 1.08995 * 109.47216 * 150.00162 * 3 2 1 35 35 H 1.07998 * 119.99758 * 174.76172 * 4 2 1 36 36 H 0.96998 * 120.00236 * 0.02562 * 7 5 4 37 37 H 1.08997 * 109.49996 * 298.57363 * 10 8 7 38 38 H 1.09003 * 109.49604 * 58.64138 * 10 8 7 39 39 H 1.08998 * 109.73898 * 295.11833 * 11 10 8 40 40 H 1.09009 * 109.65796 * 174.54838 * 11 10 8 41 41 H 1.08997 * 109.47698 * 59.99571 * 15 13 12 42 42 H 1.09004 * 109.47043 * 299.99368 * 15 13 12 43 43 H 0.97004 * 119.99473 * 179.97438 * 20 19 17 44 44 H 1.08997 * 109.47261 * 65.78330 * 27 25 12 45 45 H 1.08998 * 109.46598 * 185.77757 * 27 25 12 46 46 H 1.09001 * 109.46928 * 305.77426 * 27 25 12 47 47 H 1.09000 * 109.49827 * 61.42046 * 28 8 7 48 48 H 1.08998 * 109.52120 * 301.34166 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1719 -1.1519 -0.0005 5 6 1.4409 -2.4231 0.1154 6 8 0.2248 -2.4271 0.1193 7 7 2.1190 -3.5835 0.2174 8 6 1.3910 -4.8497 0.3322 9 1 0.4787 -4.7992 -0.2622 10 6 1.0309 -5.0991 1.7986 11 6 0.2353 -6.4087 1.9088 12 7 1.0194 -7.4854 1.2888 13 6 1.2933 -8.6154 1.9703 14 8 1.8449 -9.5409 1.4134 15 6 0.9139 -8.7291 3.4243 16 16 1.4098 -10.3527 4.0521 17 6 0.8629 -10.2154 5.7215 18 1 0.3842 -9.3083 6.0600 19 6 1.0481 -11.2724 6.6016 20 7 0.6400 -11.1696 7.8488 21 14 1.8766 -12.8410 6.0162 22 1 0.8495 -13.7790 5.4962 23 1 2.8432 -12.5170 4.9365 24 1 2.5958 -13.4741 7.1508 25 6 1.4943 -7.3093 -0.0905 26 1 0.6419 -7.2778 -0.7691 27 6 2.4097 -8.4749 -0.4705 28 6 2.2710 -5.9920 -0.1802 29 1 -0.3634 -0.4360 0.9306 30 1 -0.3633 1.0239 -0.0877 31 1 -0.3634 -0.5879 -0.8428 32 1 2.4422 1.6196 -1.0277 33 1 1.6715 2.0647 0.5138 34 1 3.2129 1.1747 0.5138 35 1 3.2485 -1.1538 -0.0859 36 1 3.0890 -3.5802 0.2147 37 1 1.9436 -5.1742 2.3897 38 1 0.4240 -4.2732 2.1698 39 1 -0.7176 -6.3052 1.3898 40 1 0.0585 -6.6432 2.9585 41 1 -0.1649 -8.6136 3.5285 42 1 1.4195 -7.9491 3.9938 43 1 0.7692 -11.9086 8.4638 44 1 1.8312 -9.3984 -0.4942 45 1 2.8419 -8.2916 -1.4542 46 1 3.2080 -8.5649 0.2661 47 1 3.1721 -6.0588 0.4295 48 1 2.5469 -5.8022 -1.2175 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074797152.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:05 Heat of formation + Delta-G solvation = -75.231092 kcal Electronic energy + Delta-G solvation = -27274.043404 eV Core-core repulsion = 23454.738657 eV Total energy + Delta-G solvation = -3819.304747 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.71790 -40.75254 -38.57750 -36.47161 -35.54451 -34.67888 -34.26423 -32.45400 -30.52969 -28.96224 -28.61234 -28.12208 -27.82031 -25.33457 -23.54212 -22.60556 -21.63848 -20.58511 -19.70448 -19.37614 -17.94304 -17.85227 -17.30971 -17.07166 -16.83815 -16.69050 -16.07382 -15.77090 -15.35447 -15.07718 -15.05050 -14.97492 -14.89067 -14.73789 -14.51275 -14.19650 -13.62261 -13.49101 -13.35760 -13.29860 -13.21940 -13.16105 -13.00664 -12.98849 -12.75665 -12.63359 -12.59304 -12.38322 -12.09127 -12.01928 -11.86747 -11.71689 -11.17713 -10.64041 -10.53063 -10.24609 -10.17017 -9.80842 -9.66966 -8.99660 -8.52060 -6.22748 0.44893 0.97529 1.31072 1.45304 1.53145 1.54111 2.03491 2.24021 2.24743 2.36732 2.67603 2.86051 3.45353 3.68257 3.74798 3.81488 3.94317 3.96100 4.01607 4.17751 4.20482 4.27200 4.32932 4.40350 4.42416 4.53273 4.60408 4.65005 4.71195 4.78389 4.82294 4.84303 4.88532 4.92725 4.97935 5.07946 5.09257 5.20221 5.26414 5.37259 5.52359 5.58823 5.65282 5.69217 5.70093 6.10536 6.26314 6.65747 6.92876 7.13416 7.33801 8.60386 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019248 B = 0.002196 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.348029 B =12747.064916 C =13692.120269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.032 4.032 3 C -0.125 4.125 4 C -0.249 4.249 5 C 0.538 3.462 6 O -0.578 6.578 7 N -0.714 5.714 8 C 0.153 3.847 9 H 0.080 0.920 10 C -0.136 4.136 11 C 0.107 3.893 12 N -0.605 5.605 13 C 0.536 3.464 14 O -0.542 6.542 15 C -0.111 4.111 16 S -0.169 6.169 17 C -0.530 4.530 18 H 0.060 0.940 19 C 0.044 3.956 20 N -0.917 5.917 21 Si 0.916 3.084 22 H -0.263 1.263 23 H -0.236 1.236 24 H -0.259 1.259 25 C 0.147 3.853 26 H 0.086 0.914 27 C -0.131 4.131 28 C -0.125 4.125 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.152 0.848 36 H 0.413 0.587 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.277 0.723 44 H 0.055 0.945 45 H 0.070 0.930 46 H 0.044 0.956 47 H 0.075 0.925 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.138 24.669 -20.822 32.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.033 4.033 3 C -0.182 4.182 4 C -0.269 4.269 5 C 0.329 3.671 6 O -0.460 6.460 7 N -0.365 5.365 8 C 0.048 3.952 9 H 0.098 0.902 10 C -0.175 4.175 11 C -0.016 4.016 12 N -0.340 5.340 13 C 0.324 3.676 14 O -0.420 6.420 15 C -0.262 4.262 16 S 0.057 5.943 17 C -0.677 4.677 18 H 0.078 0.922 19 C -0.161 4.161 20 N -0.555 5.555 21 Si 0.738 3.262 22 H -0.187 1.187 23 H -0.159 1.159 24 H -0.183 1.183 25 C 0.044 3.956 26 H 0.104 0.896 27 C -0.188 4.188 28 C -0.163 4.163 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.109 0.891 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.169 0.831 36 H 0.250 0.750 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.105 0.895 40 H 0.108 0.892 41 H 0.124 0.876 42 H 0.124 0.876 43 H 0.086 0.914 44 H 0.074 0.926 45 H 0.089 0.911 46 H 0.063 0.937 47 H 0.093 0.907 48 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 5.091 23.233 -21.470 32.041 hybrid contribution -0.304 0.173 1.380 1.424 sum 4.787 23.406 -20.090 31.215 Atomic orbital electron populations 1.20989 0.91960 1.01724 1.02607 1.22872 0.96438 0.95853 0.88185 1.21079 1.00312 0.92816 1.03952 1.22500 1.01332 0.90858 1.12231 1.19044 0.87170 0.85285 0.75579 1.90775 1.15310 1.87836 1.52063 1.45871 1.10857 1.05274 1.74477 1.20781 0.95919 0.82854 0.95623 0.90213 1.22300 1.01026 0.96751 0.97444 1.21967 0.94442 0.85506 0.99726 1.48154 1.54422 1.16574 1.14821 1.19890 0.78143 0.82348 0.87263 1.90744 1.42927 1.39285 1.69040 1.23359 1.05603 1.01013 0.96220 1.84605 1.79916 1.20030 1.09716 1.22464 1.44896 1.05193 0.95181 0.92210 1.25588 0.94888 1.01464 0.94167 1.70023 1.46357 1.34099 1.05024 0.85844 0.80645 0.79755 0.79970 1.18731 1.15937 1.18340 1.21342 0.97399 0.95489 0.81335 0.89580 1.22036 0.99223 0.97075 1.00469 1.22194 0.98466 0.91952 1.03704 0.91903 0.91113 0.91643 0.89068 0.90156 0.89947 0.83070 0.75033 0.91212 0.90682 0.89521 0.89215 0.87637 0.87609 0.91378 0.92609 0.91099 0.93732 0.90657 0.87802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.80 8.33 71.23 0.59 -1.21 16 2 C -0.03 -0.38 6.11 -17.62 -0.11 -0.49 16 3 C -0.13 -0.72 9.97 71.24 0.71 0.00 16 4 C -0.25 -3.12 9.63 23.43 0.23 -2.89 16 5 C 0.54 9.65 7.69 86.57 0.67 10.31 16 6 O -0.58 -14.44 12.76 -4.06 -0.05 -14.50 16 7 N -0.71 -9.79 5.07 -445.99 -2.26 -12.05 16 8 C 0.15 2.46 2.41 45.02 0.11 2.57 16 9 H 0.08 1.51 7.58 -2.39 -0.02 1.49 16 10 C -0.14 -2.50 5.67 30.82 0.17 -2.33 16 11 C 0.11 2.21 6.38 86.51 0.55 2.77 16 12 N -0.60 -15.27 2.97 -794.19 -2.36 -17.62 16 13 C 0.54 18.52 7.52 87.66 0.66 19.18 16 14 O -0.54 -21.94 11.43 -3.03 -0.03 -21.97 16 15 C -0.11 -4.28 4.51 71.24 0.32 -3.96 16 16 S -0.17 -8.57 18.55 -56.49 -1.05 -9.61 16 17 C -0.53 -31.07 10.04 67.95 0.68 -30.39 16 18 H 0.06 3.71 8.03 -2.91 -0.02 3.69 16 19 C 0.04 2.61 5.50 84.86 0.47 3.08 16 20 N -0.92 -56.16 13.97 21.65 0.30 -55.86 16 21 Si 0.92 45.14 27.74 68.60 1.90 47.04 16 22 H -0.26 -12.64 7.11 99.48 0.71 -11.93 16 23 H -0.24 -11.53 6.74 99.48 0.67 -10.86 16 24 H -0.26 -11.96 7.11 99.48 0.71 -11.26 16 25 C 0.15 3.00 3.48 44.97 0.16 3.16 16 26 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 27 C -0.13 -3.18 7.62 71.98 0.55 -2.63 16 28 C -0.12 -1.81 4.85 30.67 0.15 -1.66 16 29 H 0.06 1.22 7.36 -2.39 -0.02 1.21 16 30 H 0.07 0.78 7.98 -2.39 -0.02 0.76 16 31 H 0.06 1.25 7.09 -2.39 -0.02 1.23 16 32 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 33 H 0.08 0.37 8.09 -2.39 -0.02 0.36 16 34 H 0.08 0.32 8.07 -2.39 -0.02 0.30 16 35 H 0.15 1.00 8.06 -2.91 -0.02 0.98 16 36 H 0.41 3.46 8.59 -92.71 -0.80 2.67 16 37 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.09 1.97 5.93 -2.38 -0.01 1.95 16 41 H 0.11 3.83 7.69 -2.40 -0.02 3.82 16 42 H 0.11 3.85 7.94 -2.39 -0.02 3.83 16 43 H 0.28 15.66 8.31 -92.71 -0.77 14.89 16 44 H 0.05 1.68 6.54 -2.39 -0.02 1.67 16 45 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 46 H 0.04 1.29 6.95 -2.39 -0.02 1.28 16 47 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 48 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -75.78 392.48 2.48 -73.30 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: 0.12 Total: 15.76 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: 5.91 Total: -4.49 kcal Atomic # 7 Polarization: -81.22 SS G_CDS: -4.32 Total: -85.53 kcal Atomic # 8 Polarization: -36.38 SS G_CDS: -0.09 Total: -36.47 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.90 Total: 47.04 kcal Atomic # 16 Polarization: -8.57 SS G_CDS: -1.05 Total: -9.61 kcal Total: -75.78 2.48 -73.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074797152.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.929 kcal (2) G-P(sol) polarization free energy of solvation -75.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds