Wall clock time and date at job start Sat Apr 11 2020 06:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.50700 * 120.00447 * 2 1 4 4 C 1.32994 * 119.99535 * 179.97438 * 2 1 3 5 5 C 1.47109 * 119.99842 * 174.42059 * 4 2 1 6 6 O 1.21609 * 119.99675 * 4.86522 * 5 4 2 7 7 N 1.34776 * 119.99810 * 184.85853 * 5 4 2 8 8 C 1.46500 * 119.99602 * 180.02562 * 7 5 4 9 9 H 1.08997 * 109.46357 * 324.97497 * 8 7 5 10 10 C 1.53047 * 109.46059 * 84.93322 * 8 7 5 11 11 C 1.53188 * 109.31465 * 181.38035 * 10 8 7 12 12 N 1.46921 * 108.77636 * 305.36815 * 11 10 8 13 13 C 1.34778 * 120.63179 * 233.58259 * 12 11 10 14 14 O 1.21278 * 120.00460 * 180.02562 * 13 12 11 15 15 C 1.50705 * 119.99586 * 0.02562 * 13 12 11 16 16 S 1.81000 * 109.47000 * 180.02562 * 15 13 12 17 17 C 1.76195 * 99.99967 * 179.97438 * 16 15 13 18 18 H 1.07996 * 120.00292 * 0.02562 * 17 16 15 19 19 C 1.38800 * 120.00081 * 179.97438 * 17 16 15 20 20 N 1.31627 * 120.00271 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 120.00079 * 0.02562 * 19 17 16 22 22 H 1.48502 * 109.47108 * 89.99664 * 21 19 17 23 23 H 1.48496 * 109.47327 * 210.00088 * 21 19 17 24 24 H 1.48503 * 109.46940 * 330.00283 * 21 19 17 25 25 C 1.46928 * 118.74214 * 53.60864 * 12 11 10 26 26 H 1.08995 * 109.58808 * 186.60615 * 25 12 11 27 27 C 1.53001 * 109.70467 * 66.24338 * 25 12 11 28 28 C 1.53046 * 109.45958 * 204.99600 * 8 7 5 29 29 H 1.08996 * 109.47450 * 240.00568 * 1 2 3 30 30 H 1.09005 * 109.46606 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.47122 * 119.99770 * 1 2 3 32 32 H 1.09000 * 109.46662 * 244.59568 * 3 2 1 33 33 H 1.08999 * 109.46999 * 4.58867 * 3 2 1 34 34 H 1.08992 * 109.47406 * 124.59301 * 3 2 1 35 35 H 1.08002 * 120.00238 * 354.15071 * 4 2 1 36 36 H 0.96999 * 120.00095 * 0.02562 * 7 5 4 37 37 H 1.08996 * 109.49668 * 301.33906 * 10 8 7 38 38 H 1.09001 * 109.49783 * 61.43314 * 10 8 7 39 39 H 1.08997 * 109.58642 * 185.57576 * 11 10 8 40 40 H 1.09004 * 109.69812 * 65.22339 * 11 10 8 41 41 H 1.09006 * 109.46807 * 299.99510 * 15 13 12 42 42 H 1.09000 * 109.47375 * 60.00082 * 15 13 12 43 43 H 0.97005 * 120.00564 * 180.02562 * 20 19 17 44 44 H 1.08998 * 109.47379 * 300.64390 * 27 25 12 45 45 H 1.09003 * 109.46673 * 60.64558 * 27 25 12 46 46 H 1.09001 * 109.46830 * 180.63873 * 27 25 12 47 47 H 1.08998 * 109.49807 * 298.57109 * 28 8 7 48 48 H 1.09003 * 109.48977 * 58.66797 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3050 0.0000 4 6 2.1718 -1.1518 0.0005 5 6 3.6377 -1.1550 -0.1234 6 8 4.2489 -0.1037 -0.1371 7 7 4.3031 -2.3229 -0.2214 8 6 5.7630 -2.3260 -0.3442 9 1 6.0798 -1.4645 -0.9320 10 6 6.3920 -2.2514 1.0490 11 6 7.9177 -2.2200 0.9151 12 7 8.3466 -3.3791 0.1207 13 6 9.2819 -4.2271 0.5927 14 8 9.6278 -5.1800 -0.0729 15 6 9.8978 -3.9909 1.9477 16 16 11.1096 -5.2899 2.2942 17 6 11.6565 -4.7804 3.8898 18 1 11.2392 -3.8953 4.3465 19 6 12.6230 -5.5173 4.5603 20 7 13.0311 -5.1370 5.7525 21 14 13.3444 -7.0489 3.7707 22 1 14.5386 -6.6773 2.9700 23 1 13.7385 -8.0128 4.8293 24 1 12.3295 -7.6740 2.8849 25 6 7.7370 -3.5961 -1.1985 26 1 8.0725 -4.5508 -1.6034 27 6 8.1427 -2.4658 -2.1465 28 6 6.2133 -3.6122 -1.0408 29 1 -0.3634 -0.5137 0.8900 30 1 -0.3633 1.0277 -0.0005 31 1 -0.3633 -0.5138 -0.8900 32 1 2.8240 1.3991 -0.9283 33 1 1.5552 2.1319 0.0822 34 1 2.9475 1.3280 0.8459 35 1 1.6360 -2.0846 0.0963 36 1 3.8155 -3.1613 -0.2107 37 1 6.0524 -1.3469 1.5535 38 1 6.0957 -3.1252 1.6293 39 1 8.3724 -2.2667 1.9046 40 1 8.2239 -1.3010 0.4153 41 1 10.3936 -3.0202 1.9573 42 1 9.1182 -4.0083 2.7093 43 1 13.7068 -5.6518 6.2209 44 1 7.8108 -1.5116 -1.7373 45 1 9.2270 -2.4562 -2.2573 46 1 7.6794 -2.6245 -3.1203 47 1 5.9186 -4.4732 -0.4408 48 1 5.7465 -3.6760 -2.0237 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074797153.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:09 Heat of formation + Delta-G solvation = -66.783833 kcal Electronic energy + Delta-G solvation = -27257.792477 eV Core-core repulsion = 23438.854031 eV Total energy + Delta-G solvation = -3818.938446 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.69972 -39.74004 -37.66929 -35.87146 -34.71392 -32.97003 -32.43566 -31.50000 -29.18082 -28.42161 -28.09626 -27.56641 -25.61392 -24.30527 -23.03060 -21.40481 -20.97978 -19.41240 -18.37318 -17.73685 -17.24280 -17.05823 -16.01730 -15.70881 -15.43570 -15.16991 -14.95838 -14.73912 -14.48904 -14.34544 -14.15273 -13.96012 -13.82751 -13.41933 -13.19546 -13.15120 -12.85487 -12.76820 -12.67694 -12.31241 -12.21890 -12.07938 -11.99145 -11.93214 -11.69230 -11.36753 -11.29124 -11.21068 -11.00805 -10.61015 -10.52495 -9.86894 -9.85234 -9.61362 -9.45276 -9.15779 -9.00171 -8.63244 -8.48591 -6.91690 -6.28530 -4.00267 1.01750 2.69146 2.85149 2.99834 3.02519 3.17786 3.33372 3.50473 3.58603 4.26842 4.33223 4.39556 4.44112 4.54114 4.64154 4.76421 4.80002 4.87837 4.93974 5.03543 5.04504 5.07320 5.10484 5.22215 5.25105 5.28141 5.37052 5.38914 5.40730 5.53172 5.54052 5.61769 5.70063 5.73315 5.75393 5.78794 5.90222 5.93500 6.00149 6.09604 6.13132 6.17544 6.26606 6.59734 7.27356 7.46703 7.94419 8.00990 8.41999 8.43747 9.17618 10.80633 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020742 B = 0.002148 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.617250 B =13033.570781 C =13770.918869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.030 4.030 3 C -0.118 4.118 4 C -0.241 4.241 5 C 0.546 3.454 6 O -0.541 6.541 7 N -0.725 5.725 8 C 0.146 3.854 9 H 0.093 0.907 10 C -0.144 4.144 11 C 0.109 3.891 12 N -0.614 5.614 13 C 0.536 3.464 14 O -0.520 6.520 15 C -0.122 4.122 16 S -0.143 6.143 17 C -0.521 4.521 18 H 0.088 0.912 19 C 0.095 3.905 20 N -0.880 5.880 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C 0.143 3.857 26 H 0.105 0.895 27 C -0.164 4.164 28 C -0.135 4.135 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.052 0.948 34 H 0.084 0.916 35 H 0.124 0.876 36 H 0.399 0.601 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.094 0.906 40 H 0.071 0.929 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.271 0.729 44 H 0.060 0.940 45 H 0.062 0.938 46 H 0.066 0.934 47 H 0.074 0.926 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.410 9.896 -14.577 30.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.032 4.032 3 C -0.174 4.174 4 C -0.262 4.262 5 C 0.336 3.664 6 O -0.420 6.420 7 N -0.375 5.375 8 C 0.042 3.958 9 H 0.111 0.889 10 C -0.183 4.183 11 C -0.014 4.014 12 N -0.350 5.350 13 C 0.324 3.676 14 O -0.394 6.394 15 C -0.272 4.272 16 S 0.083 5.917 17 C -0.668 4.668 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.517 5.517 21 Si 0.682 3.318 22 H -0.192 1.192 23 H -0.200 1.200 24 H -0.159 1.159 25 C 0.039 3.961 26 H 0.123 0.877 27 C -0.222 4.222 28 C -0.174 4.174 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.071 0.929 34 H 0.103 0.897 35 H 0.142 0.858 36 H 0.233 0.767 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.112 0.888 40 H 0.090 0.910 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.082 0.918 46 H 0.085 0.915 47 H 0.092 0.908 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -24.322 9.190 -15.408 30.222 hybrid contribution -0.266 0.008 0.861 0.901 sum -24.587 9.198 -14.547 30.013 Atomic orbital electron populations 1.21047 0.91126 1.03457 1.02904 1.22610 0.95930 0.95549 0.89076 1.21094 0.99275 0.92615 1.04402 1.22325 0.93226 0.99007 1.11676 1.18560 0.88051 0.83558 0.76253 1.90784 1.70118 1.30934 1.50190 1.45998 1.07577 1.08668 1.75264 1.20987 0.79064 0.99228 0.96558 0.88874 1.22314 0.95271 1.03405 0.97326 1.21693 0.94039 0.88679 0.97036 1.48189 1.41124 1.27527 1.18198 1.20291 0.78209 0.81519 0.87622 1.90682 1.60464 1.29141 1.59133 1.23321 1.02724 1.05181 0.96005 1.84777 1.48174 1.34232 1.24481 1.22308 1.27564 1.16092 1.00861 0.89397 1.24714 0.95023 0.97447 0.94143 1.69937 1.29762 1.39481 1.12488 0.86734 0.81589 0.83278 0.80238 1.19214 1.19964 1.15939 1.21012 0.90844 1.00837 0.83400 0.87687 1.22180 1.02449 0.98643 0.98931 1.22215 0.96240 0.97486 1.01470 0.90548 0.91113 0.90524 0.89958 0.92912 0.89731 0.85767 0.76677 0.90141 0.91065 0.88799 0.91042 0.88526 0.88530 0.91952 0.92090 0.91845 0.91533 0.90755 0.90188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.53 10.07 36.00 0.36 -0.17 16 2 C -0.03 -0.20 6.11 -101.17 -0.62 -0.82 16 3 C -0.12 -0.92 8.34 36.01 0.30 -0.62 16 4 C -0.24 -1.74 9.67 -37.80 -0.37 -2.11 16 5 C 0.55 5.20 7.69 -12.66 -0.10 5.11 16 6 O -0.54 -6.75 12.76 5.27 0.07 -6.69 16 7 N -0.72 -5.69 5.07 -54.94 -0.28 -5.97 16 8 C 0.15 1.31 2.21 -67.88 -0.15 1.16 16 9 H 0.09 0.96 5.94 -51.93 -0.31 0.65 16 10 C -0.14 -1.43 5.65 -26.61 -0.15 -1.58 16 11 C 0.11 1.21 5.93 -3.72 -0.02 1.19 16 12 N -0.61 -8.21 2.68 -165.22 -0.44 -8.66 16 13 C 0.54 9.63 7.72 -10.98 -0.08 9.55 16 14 O -0.52 -11.14 15.28 5.56 0.08 -11.05 16 15 C -0.12 -2.38 4.50 36.01 0.16 -2.22 16 16 S -0.14 -3.64 18.55 -107.50 -1.99 -5.63 16 17 C -0.52 -15.02 10.04 30.94 0.31 -14.71 16 18 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 19 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 20 N -0.88 -26.59 13.97 55.49 0.78 -25.82 16 21 Si 0.86 21.84 27.74 -169.99 -4.72 17.13 16 22 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 25 C 0.14 1.60 3.20 -67.60 -0.22 1.39 16 26 H 0.11 1.37 7.00 -51.93 -0.36 1.01 16 27 C -0.16 -1.58 9.03 37.16 0.34 -1.25 16 28 C -0.14 -1.16 5.02 -26.61 -0.13 -1.30 16 29 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.24 7.70 -51.93 -0.40 -0.16 16 31 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.08 0.75 7.32 -51.93 -0.38 0.37 16 33 H 0.05 0.31 7.71 -51.93 -0.40 -0.09 16 34 H 0.08 0.81 7.14 -51.93 -0.37 0.44 16 35 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 36 H 0.40 2.22 8.59 -40.82 -0.35 1.87 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.09 1.08 5.93 -51.93 -0.31 0.77 16 40 H 0.07 0.73 7.50 -51.93 -0.39 0.34 16 41 H 0.10 1.78 7.94 -51.91 -0.41 1.36 16 42 H 0.10 1.77 7.69 -51.92 -0.40 1.37 16 43 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 44 H 0.06 0.57 5.75 -51.93 -0.30 0.27 16 45 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 48 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 393.43 15.07 5.93 5.93 Total: -1.00 -34.88 393.43 -8.80 -43.69 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -7.76 Total: 0.76 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: -0.46 Total: -3.68 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: 0.05 Total: -40.44 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: 0.15 Total: -17.74 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.72 Total: 17.13 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -1.99 Total: -5.63 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.88 -8.80 -43.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074797153.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.098 kcal (2) G-P(sol) polarization free energy of solvation -34.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds