Wall clock time and date at job start Sat Apr 11 2020 06:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.50700 * 120.00447 * 2 1 4 4 C 1.32994 * 119.99535 * 179.97438 * 2 1 3 5 5 C 1.47109 * 119.99842 * 174.42059 * 4 2 1 6 6 O 1.21609 * 119.99675 * 4.86522 * 5 4 2 7 7 N 1.34776 * 119.99810 * 184.85853 * 5 4 2 8 8 C 1.46500 * 119.99602 * 180.02562 * 7 5 4 9 9 H 1.08997 * 109.46357 * 324.97497 * 8 7 5 10 10 C 1.53047 * 109.46059 * 84.93322 * 8 7 5 11 11 C 1.53188 * 109.31465 * 181.38035 * 10 8 7 12 12 N 1.46921 * 108.77636 * 305.36815 * 11 10 8 13 13 C 1.34778 * 120.63179 * 233.58259 * 12 11 10 14 14 O 1.21278 * 120.00460 * 180.02562 * 13 12 11 15 15 C 1.50705 * 119.99586 * 0.02562 * 13 12 11 16 16 S 1.81000 * 109.47000 * 180.02562 * 15 13 12 17 17 C 1.76195 * 99.99967 * 179.97438 * 16 15 13 18 18 H 1.07996 * 120.00292 * 0.02562 * 17 16 15 19 19 C 1.38800 * 120.00081 * 179.97438 * 17 16 15 20 20 N 1.31627 * 120.00271 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 120.00079 * 0.02562 * 19 17 16 22 22 H 1.48502 * 109.47108 * 89.99664 * 21 19 17 23 23 H 1.48496 * 109.47327 * 210.00088 * 21 19 17 24 24 H 1.48503 * 109.46940 * 330.00283 * 21 19 17 25 25 C 1.46928 * 118.74214 * 53.60864 * 12 11 10 26 26 H 1.08995 * 109.58808 * 186.60615 * 25 12 11 27 27 C 1.53001 * 109.70467 * 66.24338 * 25 12 11 28 28 C 1.53046 * 109.45958 * 204.99600 * 8 7 5 29 29 H 1.08996 * 109.47450 * 240.00568 * 1 2 3 30 30 H 1.09005 * 109.46606 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.47122 * 119.99770 * 1 2 3 32 32 H 1.09000 * 109.46662 * 244.59568 * 3 2 1 33 33 H 1.08999 * 109.46999 * 4.58867 * 3 2 1 34 34 H 1.08992 * 109.47406 * 124.59301 * 3 2 1 35 35 H 1.08002 * 120.00238 * 354.15071 * 4 2 1 36 36 H 0.96999 * 120.00095 * 0.02562 * 7 5 4 37 37 H 1.08996 * 109.49668 * 301.33906 * 10 8 7 38 38 H 1.09001 * 109.49783 * 61.43314 * 10 8 7 39 39 H 1.08997 * 109.58642 * 185.57576 * 11 10 8 40 40 H 1.09004 * 109.69812 * 65.22339 * 11 10 8 41 41 H 1.09006 * 109.46807 * 299.99510 * 15 13 12 42 42 H 1.09000 * 109.47375 * 60.00082 * 15 13 12 43 43 H 0.97005 * 120.00564 * 180.02562 * 20 19 17 44 44 H 1.08998 * 109.47379 * 300.64390 * 27 25 12 45 45 H 1.09003 * 109.46673 * 60.64558 * 27 25 12 46 46 H 1.09001 * 109.46830 * 180.63873 * 27 25 12 47 47 H 1.08998 * 109.49807 * 298.57109 * 28 8 7 48 48 H 1.09003 * 109.48977 * 58.66797 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3050 0.0000 4 6 2.1718 -1.1518 0.0005 5 6 3.6377 -1.1550 -0.1234 6 8 4.2489 -0.1037 -0.1371 7 7 4.3031 -2.3229 -0.2214 8 6 5.7630 -2.3260 -0.3442 9 1 6.0798 -1.4645 -0.9320 10 6 6.3920 -2.2514 1.0490 11 6 7.9177 -2.2200 0.9151 12 7 8.3466 -3.3791 0.1207 13 6 9.2819 -4.2271 0.5927 14 8 9.6278 -5.1800 -0.0729 15 6 9.8978 -3.9909 1.9477 16 16 11.1096 -5.2899 2.2942 17 6 11.6565 -4.7804 3.8898 18 1 11.2392 -3.8953 4.3465 19 6 12.6230 -5.5173 4.5603 20 7 13.0311 -5.1370 5.7525 21 14 13.3444 -7.0489 3.7707 22 1 14.5386 -6.6773 2.9700 23 1 13.7385 -8.0128 4.8293 24 1 12.3295 -7.6740 2.8849 25 6 7.7370 -3.5961 -1.1985 26 1 8.0725 -4.5508 -1.6034 27 6 8.1427 -2.4658 -2.1465 28 6 6.2133 -3.6122 -1.0408 29 1 -0.3634 -0.5137 0.8900 30 1 -0.3633 1.0277 -0.0005 31 1 -0.3633 -0.5138 -0.8900 32 1 2.8240 1.3991 -0.9283 33 1 1.5552 2.1319 0.0822 34 1 2.9475 1.3280 0.8459 35 1 1.6360 -2.0846 0.0963 36 1 3.8155 -3.1613 -0.2107 37 1 6.0524 -1.3469 1.5535 38 1 6.0957 -3.1252 1.6293 39 1 8.3724 -2.2667 1.9046 40 1 8.2239 -1.3010 0.4153 41 1 10.3936 -3.0202 1.9573 42 1 9.1182 -4.0083 2.7093 43 1 13.7068 -5.6518 6.2209 44 1 7.8108 -1.5116 -1.7373 45 1 9.2270 -2.4562 -2.2573 46 1 7.6794 -2.6245 -3.1203 47 1 5.9186 -4.4732 -0.4408 48 1 5.7465 -3.6760 -2.0237 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074797153.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:09 Heat of formation + Delta-G solvation = -89.450677 kcal Electronic energy + Delta-G solvation = -27258.775385 eV Core-core repulsion = 23438.854031 eV Total energy + Delta-G solvation = -3819.921355 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.66974 -40.68340 -38.78369 -36.51032 -35.56868 -34.68158 -33.97273 -32.40732 -30.55851 -29.15377 -28.62864 -28.26243 -27.86171 -25.18754 -23.91809 -22.36665 -21.84931 -20.27331 -19.78218 -19.10775 -18.37012 -17.91684 -17.18345 -16.93251 -16.80212 -16.62273 -16.02445 -15.83546 -15.34270 -15.19256 -15.11669 -14.97465 -14.91701 -14.60212 -14.36842 -14.28365 -14.02547 -13.50629 -13.34592 -13.33699 -13.22934 -13.19060 -13.03203 -13.00957 -12.75662 -12.62334 -12.46144 -12.36267 -12.20614 -12.06010 -11.87013 -11.39229 -11.17975 -10.93276 -10.60195 -10.54016 -10.24471 -9.79612 -9.76438 -9.01207 -8.52189 -6.23396 0.45017 0.96011 1.30873 1.44775 1.49251 1.52909 2.00862 2.24262 2.27185 2.35174 2.66721 2.85848 3.42084 3.67122 3.74970 3.84239 3.93295 3.96306 4.03247 4.10352 4.16270 4.29147 4.33051 4.38654 4.40447 4.53039 4.57404 4.61512 4.69985 4.72881 4.83561 4.84217 4.92609 4.93635 4.95673 5.02820 5.08596 5.10084 5.20477 5.34584 5.52591 5.55402 5.58896 5.65417 5.69912 6.10478 6.21393 6.66404 6.92673 7.05813 7.34486 8.60154 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020742 B = 0.002148 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.617250 B =13033.570781 C =13770.918869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.031 4.031 3 C -0.116 4.116 4 C -0.249 4.249 5 C 0.538 3.462 6 O -0.577 6.577 7 N -0.714 5.714 8 C 0.152 3.848 9 H 0.085 0.915 10 C -0.136 4.136 11 C 0.105 3.895 12 N -0.600 5.600 13 C 0.538 3.462 14 O -0.560 6.560 15 C -0.108 4.108 16 S -0.173 6.173 17 C -0.529 4.529 18 H 0.061 0.939 19 C 0.045 3.955 20 N -0.916 5.916 21 Si 0.915 3.085 22 H -0.263 1.263 23 H -0.258 1.258 24 H -0.236 1.236 25 C 0.137 3.863 26 H 0.088 0.912 27 C -0.158 4.158 28 C -0.123 4.123 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.151 0.849 36 H 0.413 0.587 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.108 0.892 42 H 0.110 0.890 43 H 0.277 0.723 44 H 0.066 0.934 45 H 0.047 0.953 46 H 0.089 0.911 47 H 0.074 0.926 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.801 9.705 -16.023 33.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.033 4.033 3 C -0.173 4.173 4 C -0.270 4.270 5 C 0.329 3.671 6 O -0.459 6.459 7 N -0.365 5.365 8 C 0.047 3.953 9 H 0.103 0.897 10 C -0.175 4.175 11 C -0.018 4.018 12 N -0.334 5.334 13 C 0.325 3.675 14 O -0.438 6.438 15 C -0.259 4.259 16 S 0.054 5.946 17 C -0.677 4.677 18 H 0.079 0.921 19 C -0.160 4.160 20 N -0.554 5.554 21 Si 0.737 3.263 22 H -0.187 1.187 23 H -0.183 1.183 24 H -0.160 1.160 25 C 0.034 3.966 26 H 0.106 0.894 27 C -0.215 4.215 28 C -0.162 4.162 29 H 0.105 0.895 30 H 0.096 0.904 31 H 0.107 0.893 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.169 0.831 36 H 0.249 0.751 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.108 0.892 40 H 0.104 0.896 41 H 0.126 0.874 42 H 0.128 0.872 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.066 0.934 46 H 0.107 0.893 47 H 0.093 0.907 48 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -26.761 9.012 -16.857 32.886 hybrid contribution 0.359 0.246 1.285 1.357 sum -26.401 9.258 -15.572 32.019 Atomic orbital electron populations 1.21087 0.88819 1.04347 1.03933 1.22869 0.97509 0.94763 0.88142 1.21021 0.99288 0.94331 1.02620 1.22463 0.91882 1.00370 1.12272 1.19032 0.89114 0.83280 0.75627 1.90775 1.70996 1.32218 1.51934 1.45870 1.07032 1.09045 1.74542 1.20835 0.79800 0.99024 0.95661 0.89731 1.22224 0.94146 1.03108 0.98060 1.21873 0.95037 0.88185 0.96717 1.48174 1.39366 1.26773 1.19046 1.19945 0.78997 0.81811 0.86721 1.90667 1.62224 1.31029 1.59895 1.23300 1.01530 1.03240 0.97841 1.84665 1.50435 1.37277 1.22219 1.22446 1.27540 1.15245 1.02442 0.92057 1.25573 0.95447 1.00350 0.94657 1.70015 1.30630 1.41006 1.13755 0.85860 0.80753 0.80000 0.79708 1.18721 1.18258 1.16027 1.21235 0.92450 1.00706 0.82196 0.89401 1.22135 1.01611 0.98134 0.99667 1.22117 0.94059 0.97143 1.02840 0.89471 0.90418 0.89282 0.91645 0.91136 0.91870 0.83131 0.75069 0.90543 0.91192 0.89172 0.89631 0.87354 0.87204 0.91353 0.91511 0.93396 0.89262 0.90684 0.87756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.68 10.07 71.23 0.72 0.03 16 2 C -0.03 -0.37 6.11 -17.62 -0.11 -0.47 16 3 C -0.12 -1.77 8.34 71.24 0.59 -1.17 16 4 C -0.25 -3.07 9.67 23.43 0.23 -2.84 16 5 C 0.54 9.50 7.69 86.57 0.67 10.17 16 6 O -0.58 -14.21 12.76 -4.06 -0.05 -14.26 16 7 N -0.71 -9.65 5.07 -445.99 -2.26 -11.92 16 8 C 0.15 2.42 2.21 45.02 0.10 2.52 16 9 H 0.08 1.57 5.94 -2.39 -0.01 1.56 16 10 C -0.14 -2.51 5.65 30.67 0.17 -2.33 16 11 C 0.10 2.20 5.93 86.36 0.51 2.71 16 12 N -0.60 -15.38 2.68 -795.04 -2.13 -17.51 16 13 C 0.54 19.10 7.72 87.66 0.68 19.77 16 14 O -0.56 -24.02 15.28 -3.02 -0.05 -24.06 16 15 C -0.11 -4.21 4.50 71.24 0.32 -3.89 16 16 S -0.17 -8.82 18.55 -56.49 -1.05 -9.87 16 17 C -0.53 -31.07 10.04 67.95 0.68 -30.39 16 18 H 0.06 3.80 8.03 -2.91 -0.02 3.78 16 19 C 0.05 2.67 5.50 84.86 0.47 3.14 16 20 N -0.92 -56.06 13.97 21.65 0.30 -55.76 16 21 Si 0.91 45.23 27.74 68.60 1.90 47.13 16 22 H -0.26 -12.68 7.11 99.48 0.71 -11.97 16 23 H -0.26 -11.94 7.11 99.48 0.71 -11.24 16 24 H -0.24 -11.65 6.74 99.48 0.67 -10.98 16 25 C 0.14 2.86 3.20 44.97 0.14 3.00 16 26 H 0.09 2.21 7.00 -2.39 -0.02 2.20 16 27 C -0.16 -2.76 9.03 71.98 0.65 -2.11 16 28 C -0.12 -1.81 5.02 30.67 0.15 -1.66 16 29 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.08 0.33 7.70 -2.38 -0.02 0.31 16 31 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.06 1.21 7.32 -2.39 -0.02 1.19 16 33 H 0.07 0.76 7.71 -2.39 -0.02 0.75 16 34 H 0.06 1.23 7.14 -2.39 -0.02 1.22 16 35 H 0.15 0.99 8.06 -2.91 -0.02 0.96 16 36 H 0.41 3.40 8.59 -92.71 -0.80 2.60 16 37 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.09 1.98 5.93 -2.39 -0.01 1.96 16 40 H 0.09 1.61 7.50 -2.38 -0.02 1.59 16 41 H 0.11 3.95 7.94 -2.39 -0.02 3.93 16 42 H 0.11 3.97 7.69 -2.39 -0.02 3.95 16 43 H 0.28 15.66 8.31 -92.70 -0.77 14.89 16 44 H 0.07 1.10 5.75 -2.39 -0.01 1.09 16 45 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 48 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -76.99 393.43 2.77 -74.23 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 0.13 Total: 15.54 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: 5.98 Total: -3.53 kcal Atomic # 7 Polarization: -81.09 SS G_CDS: -4.09 Total: -85.19 kcal Atomic # 8 Polarization: -38.22 SS G_CDS: -0.10 Total: -38.32 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.90 Total: 47.13 kcal Atomic # 16 Polarization: -8.82 SS G_CDS: -1.05 Total: -9.87 kcal Total: -76.99 2.77 -74.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074797153.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.225 kcal (2) G-P(sol) polarization free energy of solvation -76.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds