Wall clock time and date at job start Sat Apr 11 2020 06:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.50692 * 120.00202 * 2 1 4 4 C 1.32991 * 119.99657 * 179.97438 * 2 1 3 5 5 C 1.47105 * 120.00181 * 354.78814 * 4 2 1 6 6 O 1.21614 * 119.99963 * 5.03899 * 5 4 2 7 7 N 1.34775 * 119.99918 * 185.03747 * 5 4 2 8 8 C 1.46502 * 119.99980 * 179.97438 * 7 5 4 9 9 H 1.09008 * 109.45970 * 324.70414 * 8 7 5 10 10 C 1.53039 * 109.45727 * 84.65863 * 8 7 5 11 11 C 1.53192 * 109.31302 * 181.38875 * 10 8 7 12 12 N 1.46924 * 108.77413 * 305.36481 * 11 10 8 13 13 C 1.34780 * 120.62887 * 233.58631 * 12 11 10 14 14 O 1.21285 * 119.99681 * 185.75456 * 13 12 11 15 15 C 1.50699 * 120.00334 * 5.75459 * 13 12 11 16 16 S 1.80996 * 109.47059 * 179.97438 * 15 13 12 17 17 C 1.76209 * 99.99892 * 180.02562 * 16 15 13 18 18 H 1.08002 * 119.99480 * 0.02562 * 17 16 15 19 19 C 1.38790 * 120.00107 * 180.02562 * 17 16 15 20 20 N 1.31628 * 120.00214 * 179.97438 * 19 17 16 21 21 Si 1.86809 * 120.00057 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47142 * 90.00112 * 21 19 17 23 23 H 1.48495 * 109.46869 * 210.00041 * 21 19 17 24 24 H 1.48496 * 109.47077 * 329.99930 * 21 19 17 25 25 C 1.46925 * 118.74113 * 53.60978 * 12 11 10 26 26 H 1.09000 * 109.58552 * 66.17362 * 25 12 11 27 27 C 1.52996 * 109.70601 * 186.53747 * 25 12 11 28 28 C 1.53036 * 109.46287 * 204.72710 * 8 7 5 29 29 H 1.09003 * 109.47156 * 244.90925 * 1 2 3 30 30 H 1.09007 * 109.46596 * 4.90773 * 1 2 3 31 31 H 1.08992 * 109.47347 * 124.90327 * 1 2 3 32 32 H 1.08998 * 109.47481 * 180.02562 * 3 2 1 33 33 H 1.09006 * 109.47061 * 299.99908 * 3 2 1 34 34 H 1.09001 * 109.47654 * 59.99927 * 3 2 1 35 35 H 1.08002 * 120.00247 * 174.79141 * 4 2 1 36 36 H 0.97000 * 120.00292 * 359.72914 * 7 5 4 37 37 H 1.09004 * 109.49901 * 301.33427 * 10 8 7 38 38 H 1.08997 * 109.50235 * 61.43315 * 10 8 7 39 39 H 1.09007 * 109.58638 * 185.57684 * 11 10 8 40 40 H 1.09003 * 109.70551 * 65.22416 * 11 10 8 41 41 H 1.09003 * 109.47105 * 300.00279 * 15 13 12 42 42 H 1.09000 * 109.46610 * 59.99850 * 15 13 12 43 43 H 0.97002 * 120.00264 * 179.97438 * 20 19 17 44 44 H 1.09002 * 109.47001 * 173.81581 * 27 25 12 45 45 H 1.09006 * 109.46864 * 293.80683 * 27 25 12 46 46 H 1.08994 * 109.47557 * 53.80951 * 27 25 12 47 47 H 1.08995 * 109.49847 * 298.56509 * 28 8 7 48 48 H 1.08997 * 109.49813 * 58.66579 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3050 0.0000 4 6 2.1719 -1.1518 0.0005 5 6 1.4409 -2.4230 0.1168 6 8 0.2248 -2.4271 0.1202 7 7 2.1189 -3.5833 0.2196 8 6 1.3910 -4.8493 0.3360 9 1 0.4842 -4.6944 0.9209 10 6 1.0170 -5.3525 -1.0601 11 6 0.2260 -6.6582 -0.9330 12 7 1.0121 -7.6118 -0.1384 13 6 1.2801 -8.8444 -0.6131 14 8 1.8390 -9.6576 0.0922 15 6 0.8855 -9.2122 -2.0202 16 16 1.3781 -10.9208 -2.3579 17 6 0.8131 -11.0795 -4.0193 18 1 0.3290 -10.2463 -4.5069 19 6 0.9903 -12.2752 -4.7014 20 7 0.5678 -12.3940 -5.9423 21 14 1.8270 -13.7167 -3.8577 22 1 0.8067 -14.5477 -3.1695 23 1 2.5348 -14.5401 -4.8707 24 1 2.8046 -13.2081 -2.8623 25 6 1.5000 -7.1964 1.1838 26 1 0.6541 -7.0451 1.8544 27 6 2.4217 -8.2752 1.7559 28 6 2.2767 -5.8846 1.0329 29 1 -0.3633 -0.4358 0.9307 30 1 -0.3633 1.0240 -0.0879 31 1 -0.3633 -0.5880 -0.8427 32 1 3.3322 1.1059 -0.0005 33 1 1.9972 1.8766 -0.8900 34 1 1.9973 1.8767 0.8900 35 1 3.2486 -1.1539 -0.0844 36 1 3.0889 -3.5805 0.2129 37 1 0.4054 -4.6044 -1.5647 38 1 1.9240 -5.5313 -1.6375 39 1 0.0427 -7.0724 -1.9245 40 1 -0.7249 -6.4650 -0.4362 41 1 -0.1946 -9.1163 -2.1315 42 1 1.3839 -8.5450 -2.7235 43 1 0.6919 -13.2296 -6.4191 44 1 2.8676 -7.9174 2.6839 45 1 1.8444 -9.1782 1.9547 46 1 3.2097 -8.4987 1.0367 47 1 3.1718 -6.0585 0.4359 48 1 2.5618 -5.5153 2.0180 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074797155.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:14 Heat of formation + Delta-G solvation = -75.793104 kcal Electronic energy + Delta-G solvation = -27266.848620 eV Core-core repulsion = 23447.519502 eV Total energy + Delta-G solvation = -3819.329118 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.72102 -40.75181 -38.58450 -36.47231 -35.54500 -34.67922 -34.27473 -32.46541 -30.53218 -28.96246 -28.62185 -28.12256 -27.82145 -25.32760 -23.54220 -22.60493 -21.63684 -20.58428 -19.70790 -19.37460 -17.95041 -17.85545 -17.30987 -17.07152 -16.85502 -16.69622 -16.07137 -15.76152 -15.37732 -15.08241 -15.04249 -14.95679 -14.88784 -14.73835 -14.51162 -14.20858 -13.62394 -13.49228 -13.34662 -13.28845 -13.19576 -13.15800 -13.00807 -12.98814 -12.75645 -12.63906 -12.59538 -12.39691 -12.09154 -12.01795 -11.86735 -11.71687 -11.17734 -10.62995 -10.53220 -10.26457 -10.18215 -9.80650 -9.67393 -8.99667 -8.52026 -6.22777 0.45208 0.97507 1.31079 1.45260 1.53079 1.54171 2.03407 2.24336 2.26345 2.34909 2.67555 2.86071 3.45206 3.68127 3.74665 3.81517 3.94607 3.95903 4.01728 4.17693 4.20501 4.27900 4.32788 4.40707 4.42550 4.53486 4.59505 4.65232 4.70474 4.78433 4.81754 4.84242 4.88598 4.93841 4.97660 5.07039 5.09211 5.20437 5.26353 5.37247 5.52419 5.59347 5.65631 5.69024 5.70069 6.10544 6.26206 6.65694 6.92888 7.13313 7.33726 8.60416 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019996 B = 0.002177 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.948769 B =12859.343296 C =13759.779610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.032 4.032 3 C -0.125 4.125 4 C -0.248 4.248 5 C 0.538 3.462 6 O -0.578 6.578 7 N -0.714 5.714 8 C 0.153 3.847 9 H 0.080 0.920 10 C -0.136 4.136 11 C 0.107 3.893 12 N -0.605 5.605 13 C 0.536 3.464 14 O -0.542 6.542 15 C -0.111 4.111 16 S -0.169 6.169 17 C -0.530 4.530 18 H 0.060 0.940 19 C 0.044 3.956 20 N -0.917 5.917 21 Si 0.916 3.084 22 H -0.263 1.263 23 H -0.259 1.259 24 H -0.236 1.236 25 C 0.147 3.853 26 H 0.086 0.914 27 C -0.131 4.131 28 C -0.125 4.125 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.151 0.849 36 H 0.413 0.587 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.277 0.723 44 H 0.071 0.929 45 H 0.054 0.946 46 H 0.044 0.956 47 H 0.075 0.925 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.312 28.001 16.479 32.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.034 4.034 3 C -0.181 4.181 4 C -0.268 4.268 5 C 0.329 3.671 6 O -0.460 6.460 7 N -0.365 5.365 8 C 0.048 3.952 9 H 0.098 0.902 10 C -0.175 4.175 11 C -0.016 4.016 12 N -0.339 5.339 13 C 0.324 3.676 14 O -0.420 6.420 15 C -0.262 4.262 16 S 0.057 5.943 17 C -0.677 4.677 18 H 0.078 0.922 19 C -0.161 4.161 20 N -0.555 5.555 21 Si 0.738 3.262 22 H -0.187 1.187 23 H -0.183 1.183 24 H -0.159 1.159 25 C 0.044 3.956 26 H 0.104 0.896 27 C -0.188 4.188 28 C -0.163 4.163 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.169 0.831 36 H 0.250 0.750 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.108 0.892 40 H 0.104 0.896 41 H 0.124 0.876 42 H 0.124 0.876 43 H 0.086 0.914 44 H 0.089 0.911 45 H 0.073 0.927 46 H 0.063 0.937 47 H 0.094 0.906 48 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 5.272 26.701 17.371 32.287 hybrid contribution -0.320 -0.077 -1.423 1.461 sum 4.952 26.624 15.948 31.427 Atomic orbital electron populations 1.20957 0.91960 1.01700 1.02636 1.22866 0.96441 0.95859 0.88266 1.21078 1.00202 0.93008 1.03820 1.22545 1.01271 0.90851 1.12156 1.19056 0.87179 0.85270 0.75596 1.90777 1.15301 1.87968 1.51926 1.45868 1.10859 1.05205 1.74536 1.20778 0.95867 0.82864 0.95662 0.90223 1.22224 1.01058 0.96280 0.97979 1.21872 0.94419 0.88526 0.96818 1.48149 1.54188 1.12506 1.19104 1.19893 0.78231 0.82058 0.87468 1.90745 1.42729 1.50303 1.58229 1.23358 1.05567 0.99635 0.97633 1.84606 1.79368 1.14338 1.15955 1.22464 1.44478 1.02857 0.97943 0.92210 1.25586 0.94918 1.00693 0.94893 1.70020 1.46165 1.28044 1.11271 0.85845 0.80667 0.79818 0.79892 1.18735 1.18334 1.15939 1.21338 0.97247 0.94299 0.82694 0.89575 1.22028 0.99165 0.97508 1.00080 1.22199 0.98427 0.92903 1.02799 0.91698 0.91128 0.91856 0.90118 0.89702 0.89384 0.83100 0.75032 0.90625 0.91216 0.89238 0.89561 0.87634 0.87608 0.91375 0.91059 0.92679 0.93712 0.90649 0.87801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.78 8.34 71.24 0.59 -1.19 16 2 C -0.03 -0.39 6.11 -17.62 -0.11 -0.50 16 3 C -0.12 -0.69 10.05 71.23 0.72 0.02 16 4 C -0.25 -3.11 9.63 23.43 0.23 -2.89 16 5 C 0.54 9.64 7.69 86.57 0.67 10.31 16 6 O -0.58 -14.43 12.77 -4.08 -0.05 -14.49 16 7 N -0.71 -9.79 5.07 -446.00 -2.26 -12.05 16 8 C 0.15 2.46 2.41 45.02 0.11 2.57 16 9 H 0.08 1.51 7.59 -2.38 -0.02 1.49 16 10 C -0.14 -2.51 5.65 30.67 0.17 -2.34 16 11 C 0.11 2.22 6.35 86.36 0.55 2.77 16 12 N -0.60 -15.27 2.97 -795.01 -2.36 -17.64 16 13 C 0.54 18.53 7.52 87.66 0.66 19.19 16 14 O -0.54 -21.96 11.45 -3.05 -0.03 -21.99 16 15 C -0.11 -4.28 4.51 71.24 0.32 -3.96 16 16 S -0.17 -8.57 18.55 -56.49 -1.05 -9.62 16 17 C -0.53 -31.08 10.04 67.95 0.68 -30.40 16 18 H 0.06 3.71 8.03 -2.91 -0.02 3.69 16 19 C 0.04 2.62 5.50 84.86 0.47 3.09 16 20 N -0.92 -56.16 13.97 21.65 0.30 -55.86 16 21 Si 0.92 45.15 27.74 68.60 1.90 47.05 16 22 H -0.26 -12.65 7.11 99.48 0.71 -11.94 16 23 H -0.26 -11.96 7.11 99.48 0.71 -11.26 16 24 H -0.24 -11.53 6.74 99.48 0.67 -10.86 16 25 C 0.15 3.00 3.49 44.98 0.16 3.16 16 26 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 27 C -0.13 -3.17 7.61 71.98 0.55 -2.62 16 28 C -0.12 -1.81 4.84 30.67 0.15 -1.66 16 29 H 0.06 1.21 7.36 -2.39 -0.02 1.19 16 30 H 0.07 0.77 8.01 -2.38 -0.02 0.75 16 31 H 0.06 1.25 7.09 -2.39 -0.02 1.23 16 32 H 0.08 0.27 7.82 -2.39 -0.02 0.25 16 33 H 0.08 0.37 8.14 -2.38 -0.02 0.35 16 34 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 35 H 0.15 1.02 7.88 -2.91 -0.02 0.99 16 36 H 0.41 3.46 8.58 -92.71 -0.80 2.67 16 37 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 38 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.09 1.96 5.93 -2.38 -0.01 1.95 16 40 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.11 3.84 7.71 -2.39 -0.02 3.82 16 42 H 0.11 3.85 7.93 -2.40 -0.02 3.83 16 43 H 0.28 15.66 8.31 -92.71 -0.77 14.89 16 44 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.05 1.66 6.58 -2.38 -0.02 1.64 16 46 H 0.04 1.30 6.93 -2.39 -0.02 1.28 16 47 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 48 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -75.81 392.22 2.47 -73.33 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: 0.12 Total: 15.71 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: 5.91 Total: -4.45 kcal Atomic # 7 Polarization: -81.23 SS G_CDS: -4.32 Total: -85.55 kcal Atomic # 8 Polarization: -36.39 SS G_CDS: -0.09 Total: -36.48 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.90 Total: 47.05 kcal Atomic # 16 Polarization: -8.57 SS G_CDS: -1.05 Total: -9.62 kcal Total: -75.81 2.47 -73.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074797155.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.459 kcal (2) G-P(sol) polarization free energy of solvation -75.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds