Wall clock time and date at job start Sat Apr 11 2020 06:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50699 * 119.99595 * 2 1 4 4 C 1.53003 * 109.47160 * 125.00164 * 3 2 1 5 5 C 1.50698 * 109.47532 * 180.02562 * 4 3 2 6 6 O 1.21281 * 119.99726 * 359.97438 * 5 4 3 7 7 N 1.34776 * 120.00087 * 180.02562 * 5 4 3 8 8 C 1.46925 * 120.62973 * 5.73316 * 7 5 4 9 9 C 1.53190 * 108.77513 * 233.58631 * 8 7 5 10 10 C 1.53043 * 109.31427 * 305.36721 * 9 8 7 11 11 H 1.09000 * 109.44532 * 181.37613 * 10 9 8 12 12 N 1.46493 * 109.46006 * 301.34410 * 10 9 8 13 13 C 1.34781 * 120.00128 * 275.06782 * 12 10 9 14 14 O 1.21284 * 119.99878 * 0.02562 * 13 12 10 15 15 C 1.50697 * 120.00070 * 179.97438 * 13 12 10 16 16 S 1.81004 * 109.47066 * 179.97438 * 15 13 12 17 17 C 1.76199 * 100.00102 * 180.02562 * 16 15 13 18 18 H 1.08002 * 120.00094 * 0.02562 * 17 16 15 19 19 C 1.38798 * 119.99966 * 180.02562 * 17 16 15 20 20 N 1.31632 * 120.00248 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00035 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47085 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47533 * 120.00053 * 21 19 17 24 24 H 1.48501 * 109.47099 * 240.00036 * 21 19 17 25 25 C 1.53040 * 109.53607 * 61.36225 * 10 9 8 26 26 C 1.46928 * 120.62901 * 185.71041 * 7 5 4 27 27 H 1.09003 * 109.70038 * 246.26665 * 26 7 5 28 28 C 1.52998 * 109.58454 * 6.62616 * 26 7 5 29 29 H 1.07995 * 119.99804 * 180.02562 * 1 2 3 30 30 H 1.08004 * 119.99743 * 359.97438 * 1 2 3 31 31 H 1.07996 * 120.00078 * 180.02562 * 2 1 3 32 32 H 1.09004 * 109.47809 * 5.00152 * 3 2 1 33 33 H 1.09002 * 109.47465 * 245.00025 * 3 2 1 34 34 H 1.09004 * 109.46769 * 59.99352 * 4 3 2 35 35 H 1.09002 * 109.46818 * 300.00257 * 4 3 2 36 36 H 1.09000 * 109.59186 * 353.37696 * 8 7 5 37 37 H 1.09002 * 109.58492 * 113.80390 * 8 7 5 38 38 H 1.09002 * 109.50119 * 185.41613 * 9 8 7 39 39 H 1.08998 * 109.49792 * 65.31926 * 9 8 7 40 40 H 0.96995 * 120.00434 * 95.06203 * 12 10 9 41 41 H 1.09005 * 109.46743 * 60.00450 * 15 13 12 42 42 H 1.08996 * 109.47823 * 299.99875 * 15 13 12 43 43 H 0.97001 * 119.99461 * 359.97438 * 20 19 17 44 44 H 1.09007 * 109.49848 * 58.59103 * 25 10 9 45 45 H 1.09005 * 109.49658 * 178.68378 * 25 10 9 46 46 H 1.09001 * 109.46424 * 173.75112 * 28 26 7 47 47 H 1.08995 * 109.47205 * 293.74386 * 28 26 7 48 48 H 1.09000 * 109.47322 * 53.75456 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3332 1.1816 5 6 3.7881 2.6386 1.1821 6 8 3.5695 3.4649 0.3217 7 7 4.7051 2.8872 2.1379 8 6 5.0723 1.8495 3.1110 9 6 4.9037 2.4167 4.5240 10 6 5.7114 3.7105 4.6499 11 1 5.6126 4.1030 5.6619 12 7 7.1224 3.4343 4.3691 13 6 7.9295 2.9855 5.3507 14 8 7.4876 2.8099 6.4665 15 6 9.3809 2.7007 5.0617 16 16 10.1933 2.1174 6.5704 17 6 11.8280 1.8695 5.9613 18 1 12.0558 2.0768 4.9261 19 6 12.8229 1.4078 6.8119 20 7 12.5452 1.1548 8.0735 21 14 14.5561 1.1457 6.1664 22 1 14.6064 1.4999 4.7251 23 1 15.5012 2.0069 6.9216 24 1 14.9384 -0.2788 6.3392 25 6 5.1849 4.7419 3.6493 26 6 5.3568 4.2011 2.2264 27 1 6.4182 4.1008 1.9993 28 6 4.7077 5.1636 1.2298 29 1 -0.5399 -0.9353 0.0004 30 1 -0.5400 0.9354 0.0004 31 1 1.8501 -0.9353 -0.0004 32 1 1.3586 2.1317 0.0896 33 1 2.6213 1.4027 -0.9314 34 1 3.7400 0.5066 1.0920 35 1 2.4772 1.2356 2.1130 36 1 4.4223 0.9837 2.9849 37 1 6.1105 1.5552 2.9570 38 1 5.2638 1.6907 5.2530 39 1 3.8500 2.6262 4.7086 40 1 7.4758 3.5742 3.4767 41 1 9.8682 3.6126 4.7164 42 1 9.4543 1.9347 4.2898 43 1 11.6452 1.2913 8.4087 44 1 4.1285 4.9296 3.8421 45 1 5.7452 5.6709 3.7555 46 1 5.1152 6.1644 1.3734 47 1 4.9156 4.8292 0.2135 48 1 3.6301 5.1833 1.3928 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074840407.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:34 Heat of formation + Delta-G solvation = -57.085422 kcal Electronic energy + Delta-G solvation = -27393.344127 eV Core-core repulsion = 23574.826236 eV Total energy + Delta-G solvation = -3818.517892 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -41.12473 -39.51335 -37.65912 -35.84136 -34.46323 -33.39028 -32.56350 -31.74104 -30.77033 -29.00909 -27.63905 -25.35525 -24.88982 -24.47149 -22.34500 -21.44496 -20.27889 -20.16743 -18.89882 -18.39997 -17.15092 -16.75019 -16.60123 -16.33390 -15.94043 -15.41973 -15.00418 -14.68140 -14.50279 -14.42511 -14.05436 -14.01770 -13.88725 -13.47871 -13.37803 -12.98106 -12.75169 -12.62053 -12.56967 -12.40909 -12.21866 -12.06703 -11.90876 -11.80220 -11.52535 -11.43186 -11.35570 -11.18560 -10.99512 -10.92833 -10.23401 -9.79278 -9.63296 -9.56017 -9.33505 -9.13412 -9.03411 -8.84011 -8.26166 -6.71037 -6.65764 -4.03912 1.85631 2.32075 2.61988 2.86258 2.91959 3.32451 3.37983 3.48296 3.55075 4.08048 4.21184 4.35228 4.41608 4.48900 4.57709 4.69587 4.71329 4.78409 4.83868 4.90194 4.96226 5.04034 5.05552 5.16863 5.18969 5.26443 5.39364 5.42938 5.45212 5.49506 5.56870 5.59234 5.62894 5.70748 5.74380 5.79670 5.81542 5.91798 5.96424 6.07310 6.23054 6.35779 6.37283 6.50159 7.08441 7.53929 7.89387 7.89781 8.44343 8.46881 9.23352 10.78280 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017084 B = 0.002123 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.549861 B =13186.514411 C =13611.737993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.156 4.156 3 C -0.078 4.078 4 C -0.139 4.139 5 C 0.516 3.484 6 O -0.535 6.535 7 N -0.609 5.609 8 C 0.107 3.893 9 C -0.147 4.147 10 C 0.147 3.853 11 H 0.093 0.907 12 N -0.733 5.733 13 C 0.532 3.468 14 O -0.516 6.516 15 C -0.132 4.132 16 S -0.115 6.115 17 C -0.608 4.608 18 H 0.066 0.934 19 C 0.035 3.965 20 N -0.885 5.885 21 Si 1.090 2.910 22 H -0.288 1.288 23 H -0.283 1.283 24 H -0.283 1.283 25 C -0.138 4.138 26 C 0.142 3.858 27 H 0.070 0.930 28 C -0.137 4.137 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.109 0.891 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.396 0.604 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.278 0.722 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.045 0.955 47 H 0.079 0.921 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.841 2.478 -16.101 27.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.174 4.174 3 C -0.116 4.116 4 C -0.179 4.179 5 C 0.305 3.695 6 O -0.412 6.412 7 N -0.344 5.344 8 C -0.016 4.016 9 C -0.186 4.186 10 C 0.042 3.958 11 H 0.111 0.889 12 N -0.389 5.389 13 C 0.318 3.682 14 O -0.390 6.390 15 C -0.283 4.283 16 S 0.111 5.889 17 C -0.756 4.756 18 H 0.085 0.915 19 C -0.175 4.175 20 N -0.519 5.519 21 Si 0.916 3.084 22 H -0.214 1.214 23 H -0.209 1.209 24 H -0.209 1.209 25 C -0.177 4.177 26 C 0.039 3.961 27 H 0.088 0.912 28 C -0.194 4.194 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.127 0.873 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.106 0.894 37 H 0.092 0.908 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.231 0.769 41 H 0.110 0.890 42 H 0.109 0.891 43 H 0.091 0.909 44 H 0.101 0.899 45 H 0.102 0.898 46 H 0.064 0.936 47 H 0.098 0.902 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -21.192 2.149 -14.230 25.617 hybrid contribution -0.646 0.612 -2.121 2.300 sum -21.838 2.762 -16.351 27.420 Atomic orbital electron populations 1.23890 0.95989 1.01915 1.01128 1.22982 0.96112 0.98389 0.99916 1.20501 0.97729 0.95396 0.97938 1.21717 0.99025 0.95981 1.01160 1.20682 0.79175 0.88987 0.80679 1.90746 1.66065 1.47367 1.37057 1.48227 1.41298 1.13638 1.31198 1.21781 1.01641 0.90160 0.87978 1.22317 1.00818 0.98788 0.96724 1.20827 0.80560 0.94349 1.00065 0.88907 1.46148 1.09595 1.69745 1.13373 1.20290 0.87570 0.75851 0.84441 1.90703 1.76165 1.50143 1.22030 1.23324 0.94217 1.04794 1.05982 1.84813 1.08208 1.85632 1.10254 1.23762 0.94791 1.56121 1.00896 0.91539 1.26057 1.04578 0.92975 0.93938 1.70745 1.24011 1.42870 1.14271 0.83251 0.73300 0.77128 0.74723 1.21403 1.20863 1.20872 1.22315 1.02768 0.98717 0.93889 1.21251 0.96703 0.82631 0.95539 0.91165 1.22184 1.01085 0.96468 0.99639 0.88469 0.88555 0.87283 0.90797 0.90238 0.88812 0.88813 0.89436 0.90780 0.89513 0.90602 0.76890 0.89017 0.89053 0.90934 0.89948 0.89813 0.93622 0.90241 0.91658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.16 14.32 29.01 0.42 -0.74 16 2 C -0.16 -0.97 9.52 -36.03 -0.34 -1.32 16 3 C -0.08 -0.56 4.95 -27.88 -0.14 -0.69 16 4 C -0.14 -0.92 4.04 -27.88 -0.11 -1.03 16 5 C 0.52 4.76 7.50 -10.99 -0.08 4.67 16 6 O -0.53 -6.35 11.55 5.56 0.06 -6.28 16 7 N -0.61 -5.14 2.97 -165.22 -0.49 -5.63 16 8 C 0.11 0.83 6.09 -3.71 -0.02 0.81 16 9 C -0.15 -1.33 5.77 -26.61 -0.15 -1.48 16 10 C 0.15 1.50 2.78 -67.89 -0.19 1.31 16 11 H 0.09 1.13 7.58 -51.93 -0.39 0.73 16 12 N -0.73 -8.66 4.26 -53.77 -0.23 -8.89 16 13 C 0.53 9.10 7.81 -10.98 -0.09 9.01 16 14 O -0.52 -10.82 15.53 5.55 0.09 -10.73 16 15 C -0.13 -2.55 6.16 36.00 0.22 -2.32 16 16 S -0.12 -3.02 19.60 -107.50 -2.11 -5.13 16 17 C -0.61 -17.25 9.50 30.94 0.29 -16.95 16 18 H 0.07 1.82 7.80 -52.49 -0.41 1.41 16 19 C 0.04 1.01 5.49 -17.43 -0.10 0.91 16 20 N -0.88 -27.23 13.67 55.49 0.76 -26.47 16 21 Si 1.09 24.79 29.92 -169.99 -5.09 19.71 16 22 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 25 C -0.14 -1.12 5.07 -26.61 -0.13 -1.26 16 26 C 0.14 1.21 3.19 -67.60 -0.22 0.99 16 27 H 0.07 0.58 6.65 -51.93 -0.35 0.23 16 28 C -0.14 -1.27 7.61 37.16 0.28 -0.99 16 29 H 0.10 0.49 8.06 -52.49 -0.42 0.06 16 30 H 0.10 0.56 7.84 -52.48 -0.41 0.15 16 31 H 0.11 0.58 8.06 -52.49 -0.42 0.16 16 32 H 0.07 0.59 7.75 -51.93 -0.40 0.19 16 33 H 0.08 0.64 8.10 -51.93 -0.42 0.21 16 34 H 0.09 0.51 7.71 -51.93 -0.40 0.11 16 35 H 0.09 0.53 7.93 -51.93 -0.41 0.12 16 36 H 0.09 0.52 5.93 -51.93 -0.31 0.21 16 37 H 0.07 0.64 7.74 -51.93 -0.40 0.23 16 38 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.40 3.85 6.87 -40.82 -0.28 3.57 16 41 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 42 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 43 H 0.28 8.73 7.12 -40.82 -0.29 8.44 16 44 H 0.08 0.64 8.14 -51.92 -0.42 0.22 16 45 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 47 H 0.08 0.87 6.57 -51.93 -0.34 0.53 16 48 H 0.06 0.69 6.93 -51.93 -0.36 0.33 16 LS Contribution 394.23 15.07 5.94 5.94 Total: -1.00 -34.61 394.23 -9.20 -43.81 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -7.78 Total: 2.76 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: -0.36 Total: -9.08 kcal Atomic # 7 Polarization: -41.03 SS G_CDS: 0.04 Total: -40.99 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: 0.15 Total: -17.01 kcal Atomic # 14 Polarization: 24.79 SS G_CDS: -5.09 Total: 19.71 kcal Atomic # 16 Polarization: -3.02 SS G_CDS: -2.11 Total: -5.13 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.61 -9.20 -43.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074840407.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.278 kcal (2) G-P(sol) polarization free energy of solvation -34.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds