Wall clock time and date at job start Sat Apr 11 2020 06:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50699 * 119.99595 * 2 1 4 4 C 1.53003 * 109.47160 * 125.00164 * 3 2 1 5 5 C 1.50698 * 109.47532 * 180.02562 * 4 3 2 6 6 O 1.21281 * 119.99726 * 359.97438 * 5 4 3 7 7 N 1.34776 * 120.00087 * 180.02562 * 5 4 3 8 8 C 1.46925 * 120.62973 * 5.73316 * 7 5 4 9 9 C 1.53190 * 108.77513 * 233.58631 * 8 7 5 10 10 C 1.53043 * 109.31427 * 305.36721 * 9 8 7 11 11 H 1.09000 * 109.44532 * 181.37613 * 10 9 8 12 12 N 1.46493 * 109.46006 * 301.34410 * 10 9 8 13 13 C 1.34781 * 120.00128 * 275.06782 * 12 10 9 14 14 O 1.21284 * 119.99878 * 0.02562 * 13 12 10 15 15 C 1.50697 * 120.00070 * 179.97438 * 13 12 10 16 16 S 1.81004 * 109.47066 * 179.97438 * 15 13 12 17 17 C 1.76199 * 100.00102 * 180.02562 * 16 15 13 18 18 H 1.08002 * 120.00094 * 0.02562 * 17 16 15 19 19 C 1.38798 * 119.99966 * 180.02562 * 17 16 15 20 20 N 1.31632 * 120.00248 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00035 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47085 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47533 * 120.00053 * 21 19 17 24 24 H 1.48501 * 109.47099 * 240.00036 * 21 19 17 25 25 C 1.53040 * 109.53607 * 61.36225 * 10 9 8 26 26 C 1.46928 * 120.62901 * 185.71041 * 7 5 4 27 27 H 1.09003 * 109.70038 * 246.26665 * 26 7 5 28 28 C 1.52998 * 109.58454 * 6.62616 * 26 7 5 29 29 H 1.07995 * 119.99804 * 180.02562 * 1 2 3 30 30 H 1.08004 * 119.99743 * 359.97438 * 1 2 3 31 31 H 1.07996 * 120.00078 * 180.02562 * 2 1 3 32 32 H 1.09004 * 109.47809 * 5.00152 * 3 2 1 33 33 H 1.09002 * 109.47465 * 245.00025 * 3 2 1 34 34 H 1.09004 * 109.46769 * 59.99352 * 4 3 2 35 35 H 1.09002 * 109.46818 * 300.00257 * 4 3 2 36 36 H 1.09000 * 109.59186 * 353.37696 * 8 7 5 37 37 H 1.09002 * 109.58492 * 113.80390 * 8 7 5 38 38 H 1.09002 * 109.50119 * 185.41613 * 9 8 7 39 39 H 1.08998 * 109.49792 * 65.31926 * 9 8 7 40 40 H 0.96995 * 120.00434 * 95.06203 * 12 10 9 41 41 H 1.09005 * 109.46743 * 60.00450 * 15 13 12 42 42 H 1.08996 * 109.47823 * 299.99875 * 15 13 12 43 43 H 0.97001 * 119.99461 * 359.97438 * 20 19 17 44 44 H 1.09007 * 109.49848 * 58.59103 * 25 10 9 45 45 H 1.09005 * 109.49658 * 178.68378 * 25 10 9 46 46 H 1.09001 * 109.46424 * 173.75112 * 28 26 7 47 47 H 1.08995 * 109.47205 * 293.74386 * 28 26 7 48 48 H 1.09000 * 109.47322 * 53.75456 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3332 1.1816 5 6 3.7881 2.6386 1.1821 6 8 3.5695 3.4649 0.3217 7 7 4.7051 2.8872 2.1379 8 6 5.0723 1.8495 3.1110 9 6 4.9037 2.4167 4.5240 10 6 5.7114 3.7105 4.6499 11 1 5.6126 4.1030 5.6619 12 7 7.1224 3.4343 4.3691 13 6 7.9295 2.9855 5.3507 14 8 7.4876 2.8099 6.4665 15 6 9.3809 2.7007 5.0617 16 16 10.1933 2.1174 6.5704 17 6 11.8280 1.8695 5.9613 18 1 12.0558 2.0768 4.9261 19 6 12.8229 1.4078 6.8119 20 7 12.5452 1.1548 8.0735 21 14 14.5561 1.1457 6.1664 22 1 14.6064 1.4999 4.7251 23 1 15.5012 2.0069 6.9216 24 1 14.9384 -0.2788 6.3392 25 6 5.1849 4.7419 3.6493 26 6 5.3568 4.2011 2.2264 27 1 6.4182 4.1008 1.9993 28 6 4.7077 5.1636 1.2298 29 1 -0.5399 -0.9353 0.0004 30 1 -0.5400 0.9354 0.0004 31 1 1.8501 -0.9353 -0.0004 32 1 1.3586 2.1317 0.0896 33 1 2.6213 1.4027 -0.9314 34 1 3.7400 0.5066 1.0920 35 1 2.4772 1.2356 2.1130 36 1 4.4223 0.9837 2.9849 37 1 6.1105 1.5552 2.9570 38 1 5.2638 1.6907 5.2530 39 1 3.8500 2.6262 4.7086 40 1 7.4758 3.5742 3.4767 41 1 9.8682 3.6126 4.7164 42 1 9.4543 1.9347 4.2898 43 1 11.6452 1.2913 8.4087 44 1 4.1285 4.9296 3.8421 45 1 5.7452 5.6709 3.7555 46 1 5.1152 6.1644 1.3734 47 1 4.9156 4.8292 0.2135 48 1 3.6301 5.1833 1.3928 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074840407.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:33 Heat of formation + Delta-G solvation = -78.676826 kcal Electronic energy + Delta-G solvation = -27394.280401 eV Core-core repulsion = 23574.826236 eV Total energy + Delta-G solvation = -3819.454165 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.91820 -40.65502 -38.61810 -36.39586 -35.45900 -34.74248 -34.08039 -32.83026 -31.35390 -30.32638 -28.42986 -27.07264 -26.01189 -25.15281 -23.06346 -22.53667 -21.22796 -20.65482 -20.43948 -19.68643 -18.13562 -17.77683 -17.53145 -17.16110 -16.80262 -16.62778 -16.22903 -15.74585 -15.60691 -15.31334 -15.24577 -15.02847 -14.92836 -14.65407 -14.43694 -14.18768 -13.90961 -13.69062 -13.59304 -13.39842 -13.23752 -13.15412 -12.76287 -12.72932 -12.65740 -12.17002 -12.06838 -11.94109 -11.93297 -11.86767 -11.77614 -11.53463 -11.11339 -11.01737 -10.31170 -10.30166 -10.20969 -10.04204 -9.59068 -8.91945 -8.85051 -6.26570 1.21449 1.38615 1.52200 1.53851 1.61856 1.63200 1.78155 1.95807 2.19418 2.34370 3.02746 3.13890 3.43324 3.65098 3.67373 3.81520 3.89051 3.97786 4.00691 4.14994 4.16600 4.17485 4.22493 4.32189 4.39486 4.41210 4.45408 4.57324 4.67123 4.71535 4.80411 4.84848 4.89988 4.92708 4.96377 5.05573 5.08308 5.18098 5.21203 5.34515 5.45318 5.64382 5.65673 5.76649 5.90173 6.16202 6.37880 6.43266 7.06433 7.16484 7.20222 8.51718 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017084 B = 0.002123 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.549861 B =13186.514411 C =13611.737993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.160 4.160 3 C -0.075 4.075 4 C -0.134 4.134 5 C 0.511 3.489 6 O -0.565 6.565 7 N -0.607 5.607 8 C 0.110 3.890 9 C -0.142 4.142 10 C 0.145 3.855 11 H 0.074 0.926 12 N -0.706 5.706 13 C 0.539 3.461 14 O -0.560 6.560 15 C -0.112 4.112 16 S -0.191 6.191 17 C -0.613 4.613 18 H 0.074 0.926 19 C -0.019 4.019 20 N -0.914 5.914 21 Si 1.140 2.860 22 H -0.264 1.264 23 H -0.275 1.275 24 H -0.275 1.275 25 C -0.125 4.125 26 C 0.139 3.861 27 H 0.077 0.923 28 C -0.126 4.126 29 H 0.108 0.892 30 H 0.094 0.906 31 H 0.121 0.879 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.092 0.908 40 H 0.411 0.589 41 H 0.108 0.892 42 H 0.111 0.889 43 H 0.261 0.739 44 H 0.090 0.910 45 H 0.092 0.908 46 H 0.058 0.942 47 H 0.060 0.940 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.056 2.316 -18.045 28.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.178 4.178 3 C -0.112 4.112 4 C -0.173 4.173 5 C 0.301 3.699 6 O -0.445 6.445 7 N -0.340 5.340 8 C -0.012 4.012 9 C -0.181 4.181 10 C 0.041 3.959 11 H 0.092 0.908 12 N -0.361 5.361 13 C 0.324 3.676 14 O -0.438 6.438 15 C -0.264 4.264 16 S 0.035 5.965 17 C -0.761 4.761 18 H 0.092 0.908 19 C -0.223 4.223 20 N -0.549 5.549 21 Si 0.958 3.042 22 H -0.188 1.188 23 H -0.201 1.201 24 H -0.200 1.200 25 C -0.164 4.164 26 C 0.036 3.964 27 H 0.095 0.905 28 C -0.183 4.183 29 H 0.126 0.874 30 H 0.112 0.888 31 H 0.139 0.861 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.130 0.870 35 H 0.127 0.873 36 H 0.129 0.871 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.110 0.890 40 H 0.248 0.752 41 H 0.126 0.874 42 H 0.129 0.871 43 H 0.072 0.928 44 H 0.109 0.891 45 H 0.110 0.890 46 H 0.076 0.924 47 H 0.079 0.921 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -21.445 2.005 -16.220 26.962 hybrid contribution -0.729 0.734 -1.604 1.908 sum -22.173 2.739 -17.824 28.580 Atomic orbital electron populations 1.24036 0.96115 1.02413 1.00692 1.23020 0.96204 0.98293 1.00272 1.20424 0.97540 0.95548 0.97714 1.21734 0.99073 0.94989 1.01536 1.21139 0.79035 0.89515 0.80175 1.90746 1.66952 1.48583 1.38238 1.48255 1.41033 1.13683 1.31066 1.21813 1.02033 0.90585 0.86772 1.22250 1.01351 0.97456 0.97088 1.20974 0.79352 0.95743 0.99850 0.90754 1.45894 1.09892 1.67486 1.12819 1.19904 0.87036 0.76039 0.84606 1.90699 1.76619 1.52493 1.23971 1.23244 0.95152 1.05716 1.02254 1.85022 1.08975 1.86535 1.15923 1.24084 0.95502 1.55290 1.01179 0.90816 1.27783 1.08961 0.92044 0.93477 1.70866 1.23143 1.45187 1.15730 0.82660 0.68398 0.77581 0.75518 1.18790 1.20095 1.20004 1.22226 1.03259 0.98161 0.92753 1.21290 0.97013 0.82710 0.95373 0.90503 1.22022 1.00286 0.97291 0.98750 0.87373 0.88773 0.86078 0.92129 0.91467 0.87041 0.87297 0.87085 0.91218 0.91524 0.89000 0.75187 0.87376 0.87125 0.92750 0.89109 0.88963 0.92371 0.92063 0.93012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.07 14.32 67.77 0.97 -1.10 16 2 C -0.16 -1.73 9.52 25.64 0.24 -1.48 16 3 C -0.07 -0.98 4.95 29.85 0.15 -0.83 16 4 C -0.13 -1.47 4.04 29.85 0.12 -1.35 16 5 C 0.51 8.55 7.50 87.66 0.66 9.21 16 6 O -0.57 -13.04 11.55 -3.03 -0.04 -13.08 16 7 N -0.61 -8.84 2.97 -795.03 -2.36 -11.21 16 8 C 0.11 1.42 6.09 86.36 0.53 1.95 16 9 C -0.14 -2.30 5.77 30.67 0.18 -2.12 16 10 C 0.15 2.71 2.78 45.02 0.13 2.84 16 11 H 0.07 1.75 7.58 -2.39 -0.02 1.73 16 12 N -0.71 -15.30 4.26 -442.41 -1.89 -17.19 16 13 C 0.54 17.90 7.81 87.66 0.68 18.59 16 14 O -0.56 -23.67 15.53 -3.04 -0.05 -23.72 16 15 C -0.11 -4.19 6.16 71.23 0.44 -3.75 16 16 S -0.19 -10.20 19.60 -56.49 -1.11 -11.30 16 17 C -0.61 -34.69 9.50 67.95 0.65 -34.05 16 18 H 0.07 3.93 7.80 -2.91 -0.02 3.91 16 19 C -0.02 -1.11 5.49 84.86 0.47 -0.65 16 20 N -0.91 -57.30 13.67 21.65 0.30 -57.01 16 21 Si 1.14 48.86 29.92 68.60 2.05 50.91 16 22 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 23 H -0.28 -11.41 7.11 99.48 0.71 -10.71 16 24 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 25 C -0.13 -1.74 5.07 30.67 0.16 -1.58 16 26 C 0.14 2.05 3.19 44.97 0.14 2.20 16 27 H 0.08 1.05 6.65 -2.39 -0.02 1.03 16 28 C -0.13 -2.17 7.61 71.98 0.55 -1.62 16 29 H 0.11 0.89 8.06 -2.91 -0.02 0.87 16 30 H 0.09 1.01 7.84 -2.91 -0.02 0.99 16 31 H 0.12 1.01 8.06 -2.91 -0.02 0.99 16 32 H 0.06 0.95 7.75 -2.38 -0.02 0.93 16 33 H 0.07 1.04 8.10 -2.39 -0.02 1.02 16 34 H 0.11 0.86 7.71 -2.38 -0.02 0.84 16 35 H 0.11 0.90 7.93 -2.39 -0.02 0.88 16 36 H 0.11 0.95 5.93 -2.39 -0.01 0.93 16 37 H 0.07 1.00 7.74 -2.39 -0.02 0.98 16 38 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.41 6.79 6.87 -92.71 -0.64 6.15 16 41 H 0.11 3.70 8.14 -2.39 -0.02 3.68 16 42 H 0.11 3.71 8.14 -2.40 -0.02 3.69 16 43 H 0.26 17.02 7.12 -92.71 -0.66 16.36 16 44 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 45 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 46 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.06 1.30 6.57 -2.39 -0.02 1.29 16 48 H 0.05 1.03 6.93 -2.39 -0.02 1.02 16 Total: -1.00 -77.47 394.23 3.38 -74.09 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: 0.42 Total: 22.25 kcal Atomic # 6 Polarization: -19.80 SS G_CDS: 6.05 Total: -13.75 kcal Atomic # 7 Polarization: -81.45 SS G_CDS: -3.95 Total: -85.41 kcal Atomic # 8 Polarization: -36.72 SS G_CDS: -0.08 Total: -36.80 kcal Atomic # 14 Polarization: 48.86 SS G_CDS: 2.05 Total: 50.91 kcal Atomic # 16 Polarization: -10.20 SS G_CDS: -1.11 Total: -11.30 kcal Total: -77.47 3.38 -74.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074840407.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.587 kcal (2) G-P(sol) polarization free energy of solvation -77.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds