Wall clock time and date at job start Sat Apr 11 2020 06:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.70337 * 2 1 4 4 C 1.52763 * 109.51561 * 239.88470 * 2 1 3 5 5 C 1.53037 * 109.38529 * 185.70475 * 4 2 1 6 6 H 1.09000 * 109.45856 * 181.25568 * 5 4 2 7 7 N 1.46500 * 109.45242 * 301.22547 * 5 4 2 8 8 C 1.34774 * 120.00297 * 205.06194 * 7 5 4 9 9 O 1.21280 * 119.99860 * 0.02562 * 8 7 5 10 10 C 1.50699 * 120.00068 * 179.97438 * 8 7 5 11 11 S 1.80998 * 109.47005 * 180.02562 * 10 8 7 12 12 C 1.76201 * 100.00101 * 180.02562 * 11 10 8 13 13 H 1.08005 * 119.99532 * 359.97438 * 12 11 10 14 14 C 1.38789 * 120.00231 * 180.02562 * 12 11 10 15 15 N 1.31634 * 120.00430 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 120.00080 * 359.97438 * 14 12 11 17 17 H 1.48508 * 109.47124 * 90.00182 * 16 14 12 18 18 H 1.48496 * 109.47546 * 209.99793 * 16 14 12 19 19 H 1.48493 * 109.47228 * 330.00553 * 16 14 12 20 20 C 1.53046 * 109.53764 * 61.24038 * 5 4 2 21 21 C 1.53197 * 109.30985 * 298.63431 * 20 5 4 22 22 N 1.46924 * 108.77583 * 54.63737 * 21 20 5 23 23 C 1.34775 * 120.62923 * 126.36831 * 22 21 20 24 24 O 1.21283 * 119.99502 * 174.19751 * 23 22 21 25 25 C 1.50691 * 120.00156 * 354.47377 * 23 22 21 26 26 C 1.52998 * 109.47142 * 179.97438 * 25 23 22 27 27 C 1.53001 * 117.49852 * 243.62156 * 26 25 23 28 28 C 1.53004 * 60.00159 * 252.50989 * 27 26 25 29 29 H 1.08995 * 109.47717 * 305.45154 * 1 2 3 30 30 H 1.09006 * 109.47309 * 65.44825 * 1 2 3 31 31 H 1.09000 * 109.46868 * 185.44433 * 1 2 3 32 32 H 1.08998 * 109.56188 * 65.66707 * 4 2 1 33 33 H 1.08996 * 109.35585 * 305.61805 * 4 2 1 34 34 H 0.97006 * 119.99479 * 25.06201 * 7 5 4 35 35 H 1.08999 * 109.46768 * 300.00110 * 10 8 7 36 36 H 1.09001 * 109.46832 * 60.00114 * 10 8 7 37 37 H 0.96994 * 120.00649 * 179.97438 * 15 14 12 38 38 H 1.08993 * 109.49603 * 178.68292 * 20 5 4 39 39 H 1.09002 * 109.52178 * 58.59985 * 20 5 4 40 40 H 1.08997 * 109.58091 * 294.84698 * 21 20 5 41 41 H 1.09000 * 109.58250 * 174.42761 * 21 20 5 42 42 H 1.09002 * 109.47176 * 299.99979 * 25 23 22 43 43 H 1.09004 * 109.47346 * 59.99976 * 25 23 22 44 44 H 1.08998 * 115.54881 * 29.33037 * 26 25 23 45 45 H 1.08997 * 117.50096 * 359.97438 * 27 26 25 46 46 H 1.09004 * 117.49944 * 145.02384 * 27 26 25 47 47 H 1.09005 * 117.49980 * 252.51626 * 28 27 26 48 48 H 1.08995 * 117.49828 * 107.48764 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0403 -0.7224 -1.2455 5 6 3.5639 -0.8460 -1.1726 6 1 3.9314 -1.3415 -2.0712 7 7 4.1575 0.4897 -1.0742 8 6 5.4213 0.6981 -1.4936 9 8 6.0669 -0.2201 -1.9530 10 6 6.0317 2.0722 -1.3929 11 16 7.7244 2.0288 -2.0325 12 6 8.1826 3.7142 -1.8001 13 1 7.4775 4.4114 -1.3719 14 6 9.4492 4.1461 -2.1683 15 7 9.7914 5.4053 -1.9952 16 14 10.6684 2.9405 -2.9095 17 1 10.5151 2.9265 -4.3866 18 1 12.0504 3.3557 -2.5593 19 1 10.4089 1.5807 -2.3721 20 6 3.9523 -1.6686 0.0582 21 6 3.4643 -0.9518 1.3212 22 7 2.0225 -0.6996 1.1945 23 6 1.1673 -1.1070 2.1532 24 8 -0.0048 -0.8019 2.0897 25 6 1.6685 -1.9365 3.3071 26 6 0.5043 -2.2618 4.2450 27 6 0.5669 -1.7043 5.6684 28 6 0.7856 -3.1984 5.4217 29 1 -0.3634 0.5960 0.8371 30 1 -0.3634 0.4270 -0.9348 31 1 -0.3633 -1.0230 0.0975 32 1 1.7633 -0.1565 -2.1349 33 1 1.5964 -1.7168 -1.2937 34 1 3.6410 1.2241 -0.7071 35 1 5.4404 2.7762 -1.9785 36 1 6.0450 2.3883 -0.3498 37 1 10.6767 5.7071 -2.2521 38 1 5.0363 -1.7759 0.0967 39 1 3.4909 -2.6543 -0.0020 40 1 3.9928 -0.0049 1.4311 41 1 3.6503 -1.5797 2.1925 42 1 2.1001 -2.8629 2.9282 43 1 2.4290 -1.3779 3.8528 44 1 -0.4757 -2.3276 3.7725 45 1 1.4376 -1.1062 5.9369 46 1 -0.3722 -1.4031 6.1327 47 1 -0.0096 -3.8801 5.7236 48 1 1.8000 -3.5828 5.5276 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074841816.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:50 Heat of formation + Delta-G solvation = -41.727754 kcal Electronic energy + Delta-G solvation = -27558.750464 eV Core-core repulsion = 23740.898530 eV Total energy + Delta-G solvation = -3817.851933 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.13409 -39.55579 -37.98187 -37.10337 -34.46179 -33.42959 -32.46774 -31.73765 -29.75479 -28.89810 -27.51894 -25.64907 -24.84825 -22.96192 -22.73371 -21.69190 -20.99795 -20.14975 -18.95045 -17.95796 -17.27840 -16.60696 -16.54572 -16.36686 -15.79718 -15.44494 -15.06468 -14.94640 -14.67412 -14.24388 -14.20524 -14.02157 -13.84317 -13.62598 -13.40003 -12.99169 -12.82155 -12.70233 -12.54110 -12.30998 -12.02074 -11.88572 -11.87264 -11.78034 -11.39479 -11.29943 -11.21255 -11.03962 -11.02125 -10.70760 -10.62230 -10.37544 -9.88785 -9.57699 -9.33114 -9.13527 -9.02609 -8.83267 -8.53958 -6.95326 -6.31594 -4.03770 2.34389 2.58584 2.72322 2.90381 3.26628 3.31345 3.42839 3.47370 3.61391 4.08506 4.28929 4.30124 4.37043 4.42991 4.53016 4.58203 4.68319 4.71769 4.73818 4.85190 4.92640 5.04532 5.05715 5.07417 5.13508 5.23186 5.24898 5.27144 5.28662 5.45831 5.49901 5.53447 5.59693 5.63346 5.71138 5.74297 5.78653 5.80784 5.92237 5.93773 5.96923 6.09319 6.38564 6.49345 7.10211 7.53155 7.91356 7.92093 8.38895 8.42526 9.14415 10.77614 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018370 B = 0.002232 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.888676 B =12540.840869 C =13023.374187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.142 3.858 3 H 0.071 0.929 4 C -0.139 4.139 5 C 0.147 3.853 6 H 0.093 0.907 7 N -0.733 5.733 8 C 0.532 3.468 9 O -0.518 6.518 10 C -0.125 4.125 11 S -0.141 6.141 12 C -0.522 4.522 13 H 0.088 0.912 14 C 0.095 3.905 15 N -0.880 5.880 16 Si 0.857 3.143 17 H -0.267 1.267 18 H -0.274 1.274 19 H -0.235 1.235 20 C -0.147 4.147 21 C 0.107 3.893 22 N -0.610 5.610 23 C 0.520 3.480 24 O -0.532 6.532 25 C -0.113 4.113 26 C -0.140 4.140 27 C -0.178 4.178 28 C -0.181 4.181 29 H 0.080 0.920 30 H 0.045 0.955 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.397 0.603 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.271 0.729 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.096 0.904 43 H 0.093 0.907 44 H 0.117 0.883 45 H 0.093 0.907 46 H 0.094 0.906 47 H 0.095 0.905 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.831 -16.255 10.760 27.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.039 3.961 3 H 0.089 0.911 4 C -0.177 4.177 5 C 0.042 3.958 6 H 0.111 0.889 7 N -0.388 5.388 8 C 0.319 3.681 9 O -0.392 6.392 10 C -0.276 4.276 11 S 0.085 5.915 12 C -0.669 4.669 13 H 0.106 0.894 14 C -0.114 4.114 15 N -0.516 5.516 16 Si 0.682 3.318 17 H -0.192 1.192 18 H -0.199 1.199 19 H -0.159 1.159 20 C -0.186 4.186 21 C -0.016 4.016 22 N -0.344 5.344 23 C 0.308 3.692 24 O -0.409 6.409 25 C -0.153 4.153 26 C -0.158 4.158 27 C -0.215 4.215 28 C -0.218 4.218 29 H 0.099 0.901 30 H 0.064 0.936 31 H 0.083 0.917 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.232 0.768 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.081 0.919 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.104 0.896 42 H 0.115 0.885 43 H 0.112 0.888 44 H 0.135 0.865 45 H 0.112 0.888 46 H 0.112 0.888 47 H 0.113 0.887 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -19.234 -17.474 9.938 27.822 hybrid contribution -0.089 1.233 0.357 1.287 sum -19.324 -16.241 10.294 27.261 Atomic orbital electron populations 1.22192 0.92208 1.03692 1.01354 1.21157 0.96076 0.95084 0.83744 0.91145 1.22243 0.94635 1.02609 0.98247 1.20827 0.92080 0.83919 0.98950 0.88888 1.46144 1.14902 1.11357 1.66403 1.20285 0.80937 0.90415 0.76511 1.90697 1.60634 1.44422 1.43474 1.23288 1.02504 0.96150 1.05649 1.84777 1.07658 1.16171 1.82849 1.22311 1.03482 0.92344 1.48804 0.89403 1.24720 0.97344 0.95091 0.94200 1.69936 1.21071 1.14676 1.45954 0.86730 0.80909 0.83345 0.80819 1.19214 1.19948 1.15943 1.22318 1.02836 0.99023 0.94463 1.21778 0.79757 1.01237 0.98810 1.48210 1.07476 1.58160 1.20588 1.20533 0.85918 0.79733 0.82985 1.90732 1.17369 1.56325 1.76452 1.21311 0.98465 1.00474 0.95048 1.22056 1.00001 1.04418 0.89373 1.23036 1.03311 0.96291 0.98879 1.23004 1.02860 0.93202 1.02762 0.90137 0.93607 0.91731 0.89750 0.89981 0.76785 0.88554 0.88557 0.91920 0.89519 0.90619 0.90709 0.89554 0.88538 0.88846 0.86454 0.88815 0.88766 0.88702 0.88744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 7.60 37.15 0.28 -0.98 16 2 C 0.14 1.18 3.18 -67.82 -0.22 0.97 16 3 H 0.07 0.57 6.64 -51.93 -0.34 0.22 16 4 C -0.14 -1.08 5.05 -26.83 -0.14 -1.21 16 5 C 0.15 1.42 2.78 -67.89 -0.19 1.24 16 6 H 0.09 1.07 7.58 -51.93 -0.39 0.68 16 7 N -0.73 -8.21 4.26 -53.77 -0.23 -8.44 16 8 C 0.53 8.62 7.81 -10.99 -0.09 8.53 16 9 O -0.52 -10.29 15.52 5.56 0.09 -10.20 16 10 C -0.13 -2.29 6.16 36.01 0.22 -2.07 16 11 S -0.14 -3.46 18.55 -107.50 -1.99 -5.46 16 12 C -0.52 -14.77 10.04 30.94 0.31 -14.46 16 13 H 0.09 2.60 8.03 -52.48 -0.42 2.17 16 14 C 0.10 2.75 5.50 -17.43 -0.10 2.65 16 15 N -0.88 -26.28 13.97 55.49 0.78 -25.50 16 16 Si 0.86 21.47 27.74 -169.99 -4.71 16.75 16 17 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.24 -5.86 6.74 56.52 0.38 -5.48 16 20 C -0.15 -1.25 5.77 -26.61 -0.15 -1.41 16 21 C 0.11 0.80 6.09 -3.71 -0.02 0.77 16 22 N -0.61 -5.04 2.98 -165.48 -0.49 -5.53 16 23 C 0.52 4.81 7.50 -10.99 -0.08 4.73 16 24 O -0.53 -6.36 11.14 5.55 0.06 -6.30 16 25 C -0.11 -0.77 4.34 -27.89 -0.12 -0.89 16 26 C -0.14 -1.05 5.41 -90.62 -0.49 -1.54 16 27 C -0.18 -1.21 10.18 -26.73 -0.27 -1.48 16 28 C -0.18 -1.09 10.25 -26.73 -0.27 -1.37 16 29 H 0.08 0.89 6.53 -51.93 -0.34 0.55 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.67 6.97 -51.93 -0.36 0.31 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.40 3.67 6.88 -40.82 -0.28 3.39 16 35 H 0.10 1.66 8.14 -51.92 -0.42 1.24 16 36 H 0.10 1.64 8.14 -51.92 -0.42 1.21 16 37 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 38 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.62 7.74 -51.93 -0.40 0.21 16 41 H 0.09 0.49 5.93 -51.93 -0.31 0.18 16 42 H 0.10 0.52 7.92 -51.93 -0.41 0.11 16 43 H 0.09 0.54 7.45 -51.93 -0.39 0.15 16 44 H 0.12 1.07 7.31 -51.93 -0.38 0.69 16 45 H 0.09 0.59 8.03 -51.93 -0.42 0.17 16 46 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 389.49 15.07 5.87 5.87 Total: -1.00 -33.67 389.49 -9.79 -43.46 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -7.83 Total: 1.86 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -1.32 Total: -6.52 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.05 Total: -39.47 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: 0.15 Total: -16.50 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.71 Total: 16.75 kcal Atomic # 16 Polarization: -3.46 SS G_CDS: -1.99 Total: -5.46 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.67 -9.79 -43.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074841816.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.736 kcal (2) G-P(sol) polarization free energy of solvation -33.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds