Wall clock time and date at job start Sat Apr 11 2020 06:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09005 * 109.69995 * 2 1 4 4 C 1.53189 * 109.58770 * 120.35491 * 2 1 3 5 5 C 1.53032 * 109.31194 * 65.15586 * 4 2 1 6 6 H 1.09000 * 109.44977 * 301.34704 * 5 4 2 7 7 N 1.46504 * 109.46197 * 181.38636 * 5 4 2 8 8 C 1.34778 * 120.00502 * 154.92759 * 7 5 4 9 9 O 1.21283 * 119.99681 * 0.02562 * 8 7 5 10 10 C 1.50696 * 119.99844 * 179.97438 * 8 7 5 11 11 S 1.81002 * 109.46649 * 180.02562 * 10 8 7 12 12 C 1.76199 * 99.99815 * 180.02562 * 11 10 8 13 13 H 1.08002 * 120.00460 * 0.02562 * 12 11 10 14 14 C 1.38805 * 119.99941 * 180.02562 * 12 11 10 15 15 N 1.31627 * 120.00247 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99893 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46845 * 90.00333 * 16 14 12 18 18 H 1.48503 * 109.47399 * 209.99822 * 16 14 12 19 19 H 1.48498 * 109.47295 * 330.00429 * 16 14 12 20 20 C 1.53043 * 109.54242 * 61.36342 * 5 4 2 21 21 C 1.53189 * 109.31097 * 298.63675 * 20 5 4 22 22 N 1.46925 * 109.58805 * 239.64930 * 2 1 3 23 23 C 1.34771 * 120.63456 * 113.79452 * 22 2 1 24 24 O 1.21281 * 119.99605 * 0.02562 * 23 22 2 25 25 C 1.50699 * 120.00259 * 180.02562 * 23 22 2 26 26 C 1.53781 * 113.61325 * 277.50360 * 25 23 22 27 27 C 1.53784 * 87.07863 * 220.01599 * 26 25 23 28 28 C 1.53776 * 113.61763 * 180.02562 * 25 23 22 29 29 H 1.09004 * 109.46397 * 180.35357 * 1 2 3 30 30 H 1.08998 * 109.46819 * 300.35096 * 1 2 3 31 31 H 1.08996 * 109.46881 * 60.35461 * 1 2 3 32 32 H 1.09003 * 109.49709 * 305.20009 * 4 2 1 33 33 H 1.09002 * 109.49511 * 185.10799 * 4 2 1 34 34 H 0.97003 * 119.99257 * 334.93142 * 7 5 4 35 35 H 1.09006 * 109.46936 * 60.00912 * 10 8 7 36 36 H 1.08998 * 109.47807 * 300.00056 * 10 8 7 37 37 H 0.97000 * 119.99573 * 359.97438 * 15 14 12 38 38 H 1.09003 * 109.49224 * 58.58755 * 20 5 4 39 39 H 1.08999 * 109.49795 * 178.64888 * 20 5 4 40 40 H 1.08991 * 109.58412 * 174.41917 * 21 20 5 41 41 H 1.08999 * 109.58756 * 294.70505 * 21 20 5 42 42 H 1.09005 * 112.84664 * 48.80495 * 25 23 22 43 43 H 1.09002 * 113.61439 * 334.55783 * 26 25 23 44 44 H 1.08992 * 113.61620 * 105.47211 * 26 25 23 45 45 H 1.08996 * 113.61624 * 270.88444 * 27 26 25 46 46 H 1.09002 * 113.61700 * 139.97671 * 27 26 25 47 47 H 1.09002 * 113.61875 * 254.53348 * 28 25 23 48 48 H 1.09001 * 113.61272 * 25.43083 * 28 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0263 0.0000 4 6 2.0437 -0.7293 1.2454 5 6 1.6416 -2.2040 1.1701 6 1 0.5567 -2.2813 1.0992 7 7 2.1025 -2.8978 2.3753 8 6 1.4744 -4.0152 2.7916 9 8 0.5279 -4.4468 2.1680 10 6 1.9490 -4.7290 4.0310 11 16 0.9108 -6.1823 4.3249 12 6 1.6662 -6.8068 5.7892 13 1 2.5129 -6.2939 6.2210 14 6 1.1731 -7.9580 6.3877 15 7 0.1415 -8.5835 5.8612 16 14 1.9744 -8.6205 7.9396 17 1 1.3200 -8.0199 9.1297 18 1 1.8225 -10.0970 7.9837 19 1 3.4177 -8.2711 7.9394 20 6 2.2802 -2.8463 -0.0636 21 6 1.7693 -2.1410 -1.3238 22 7 2.0227 -0.6994 -1.1945 23 6 2.6937 -0.0315 -2.1536 24 8 2.8964 1.1584 -2.0351 25 6 3.1921 -0.7630 -3.3733 26 6 4.5294 -1.4892 -3.1523 27 6 4.9257 -1.0227 -4.5631 28 6 3.9373 0.1391 -4.3710 29 1 -0.3632 -1.0277 0.0063 30 1 -0.3633 0.5193 0.8868 31 1 -0.3633 0.5083 -0.8931 32 1 1.6076 -0.2784 2.1368 33 1 3.1298 -0.6502 1.2913 34 1 2.8598 -2.5527 2.8738 35 1 1.8827 -4.0559 4.8858 36 1 2.9837 -5.0436 3.8955 37 1 -0.2743 -8.2396 5.0551 38 1 3.3642 -2.7473 -0.0053 39 1 2.0130 -3.9023 -0.1034 40 1 2.2946 -2.5274 -2.1971 41 1 0.6993 -2.3176 -1.4331 42 1 2.4263 -1.3862 -3.8353 43 1 5.1382 -1.0520 -2.3609 44 1 4.4293 -2.5708 -3.0623 45 1 4.6350 -1.7179 -5.3506 46 1 5.9649 -0.7032 -4.6415 47 1 3.3591 0.3726 -5.2650 48 1 4.3842 1.0213 -3.9125 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074842745.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:58 Heat of formation + Delta-G solvation = -67.490805 kcal Electronic energy + Delta-G solvation = -27530.489722 eV Core-core repulsion = 23711.520619 eV Total energy + Delta-G solvation = -3818.969103 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.14564 -39.71187 -38.47235 -37.21182 -34.71959 -32.94110 -32.55963 -31.64231 -29.23906 -27.83811 -27.13330 -26.05034 -24.91850 -24.24374 -23.06391 -21.55030 -20.48436 -19.81816 -18.81359 -18.30483 -17.96715 -16.72359 -16.55635 -15.99594 -15.87454 -15.38353 -15.11298 -14.75910 -14.62130 -14.25001 -14.06491 -13.87987 -13.55352 -13.45568 -13.36784 -13.03830 -12.86532 -12.47285 -12.42255 -12.34718 -12.34327 -12.18933 -11.94886 -11.80379 -11.52298 -11.49740 -11.25782 -10.95331 -10.93405 -10.82119 -10.62432 -10.21522 -9.90432 -9.62702 -9.57861 -9.07507 -9.01441 -8.97697 -8.26069 -6.70687 -6.65333 -4.03411 2.29186 2.60509 2.86439 2.92679 3.32406 3.36907 3.49557 3.55477 4.04211 4.11760 4.17823 4.21887 4.33715 4.39221 4.47329 4.56559 4.66904 4.77951 4.79799 4.97554 5.04250 5.09597 5.12132 5.16584 5.19383 5.25184 5.27620 5.34131 5.37073 5.46795 5.48477 5.53105 5.55473 5.61952 5.64895 5.66991 5.72297 5.81370 5.83550 5.97575 5.98851 6.06112 6.25195 6.50848 7.07517 7.56775 7.87283 7.89440 8.45384 8.47124 9.23764 10.78645 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023072 B = 0.002054 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.312088 B =13630.061859 C =14167.159605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.141 3.859 3 H 0.103 0.897 4 C -0.136 4.136 5 C 0.147 3.853 6 H 0.093 0.907 7 N -0.734 5.734 8 C 0.532 3.468 9 O -0.517 6.517 10 C -0.132 4.132 11 S -0.116 6.116 12 C -0.608 4.608 13 H 0.066 0.934 14 C 0.035 3.965 15 N -0.884 5.884 16 Si 1.087 2.913 17 H -0.284 1.284 18 H -0.280 1.280 19 H -0.287 1.287 20 C -0.146 4.146 21 C 0.109 3.891 22 N -0.606 5.606 23 C 0.527 3.473 24 O -0.544 6.544 25 C -0.140 4.140 26 C -0.123 4.123 27 C -0.142 4.142 28 C -0.118 4.118 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.398 0.602 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.278 0.722 38 H 0.069 0.931 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.074 0.926 42 H 0.113 0.887 43 H 0.084 0.916 44 H 0.076 0.924 45 H 0.083 0.917 46 H 0.072 0.928 47 H 0.071 0.929 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.971 18.187 -18.360 27.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.038 3.962 3 H 0.121 0.879 4 C -0.175 4.175 5 C 0.041 3.959 6 H 0.111 0.889 7 N -0.387 5.387 8 C 0.319 3.681 9 O -0.391 6.391 10 C -0.283 4.283 11 S 0.110 5.890 12 C -0.756 4.756 13 H 0.084 0.916 14 C -0.176 4.176 15 N -0.518 5.518 16 Si 0.913 3.087 17 H -0.210 1.210 18 H -0.205 1.205 19 H -0.213 1.213 20 C -0.185 4.185 21 C -0.014 4.014 22 N -0.339 5.339 23 C 0.316 3.684 24 O -0.421 6.421 25 C -0.161 4.161 26 C -0.161 4.161 27 C -0.179 4.179 28 C -0.156 4.156 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.232 0.768 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.104 0.896 40 H 0.107 0.893 41 H 0.092 0.908 42 H 0.131 0.869 43 H 0.103 0.897 44 H 0.095 0.905 45 H 0.102 0.898 46 H 0.091 0.909 47 H 0.090 0.910 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 6.387 16.873 -18.227 25.646 hybrid contribution 1.613 1.764 0.082 2.392 sum 8.001 18.637 -18.145 27.214 Atomic orbital electron populations 1.22189 0.94550 1.02951 1.02654 1.21113 0.94377 0.97422 0.83290 0.87867 1.22214 1.02042 0.94790 0.98415 1.20889 1.00381 0.90291 0.84300 0.88916 1.46064 1.35874 1.28175 1.28610 1.20293 0.82407 0.79825 0.85625 1.90695 1.27136 1.64778 1.56538 1.23324 1.04893 1.02616 0.97451 1.84802 1.42867 1.25269 1.36016 1.23729 1.21720 1.17256 1.12861 0.91587 1.26061 0.95609 0.92877 1.03009 1.70773 1.19746 1.39979 1.21329 0.83289 0.75011 0.76569 0.73833 1.21041 1.20491 1.21299 1.22335 1.01110 1.01084 0.93975 1.21745 1.01642 0.79275 0.98735 1.48266 1.55590 1.09369 1.20694 1.20555 0.76767 0.87210 0.83900 1.90670 1.57326 1.15313 1.78784 1.22823 0.98331 0.99849 0.95121 1.22842 0.94534 1.00385 0.98312 1.22830 0.99987 0.98284 0.96848 1.22802 0.97174 0.97536 0.98057 0.91670 0.91106 0.92167 0.89811 0.90926 0.76802 0.88992 0.88999 0.90967 0.91232 0.89618 0.89273 0.90752 0.86926 0.89689 0.90509 0.89792 0.90923 0.91045 0.88759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 9.03 37.16 0.34 -1.03 16 2 C 0.14 1.25 3.21 -67.60 -0.22 1.04 16 3 H 0.10 1.04 7.01 -51.93 -0.36 0.67 16 4 C -0.14 -1.14 5.02 -26.62 -0.13 -1.27 16 5 C 0.15 1.54 2.21 -67.89 -0.15 1.39 16 6 H 0.09 1.15 5.92 -51.93 -0.31 0.84 16 7 N -0.73 -8.92 5.08 -53.77 -0.27 -9.20 16 8 C 0.53 9.27 7.81 -10.99 -0.09 9.18 16 9 O -0.52 -10.91 15.52 5.55 0.09 -10.82 16 10 C -0.13 -2.57 6.16 36.00 0.22 -2.35 16 11 S -0.12 -3.06 19.60 -107.50 -2.11 -5.16 16 12 C -0.61 -17.31 9.50 30.94 0.29 -17.01 16 13 H 0.07 1.80 7.80 -52.49 -0.41 1.40 16 14 C 0.03 1.01 5.49 -17.43 -0.10 0.91 16 15 N -0.88 -27.26 13.67 55.49 0.76 -26.50 16 16 Si 1.09 24.75 29.92 -169.99 -5.09 19.67 16 17 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 20 C -0.15 -1.38 5.65 -26.61 -0.15 -1.53 16 21 C 0.11 0.85 5.89 -3.71 -0.02 0.83 16 22 N -0.61 -5.34 2.68 -165.22 -0.44 -5.78 16 23 C 0.53 5.29 7.22 -10.99 -0.08 5.21 16 24 O -0.54 -7.32 15.31 5.56 0.09 -7.23 16 25 C -0.14 -1.01 2.72 -90.96 -0.25 -1.26 16 26 C -0.12 -0.77 7.22 -25.92 -0.19 -0.96 16 27 C -0.14 -0.79 8.08 -25.94 -0.21 -1.00 16 28 C -0.12 -0.84 7.40 -25.94 -0.19 -1.03 16 29 H 0.06 0.57 5.73 -51.93 -0.30 0.28 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.40 3.82 8.60 -40.82 -0.35 3.47 16 35 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 36 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 37 H 0.28 8.74 7.12 -40.82 -0.29 8.45 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.09 0.54 5.46 -51.93 -0.28 0.26 16 41 H 0.07 0.58 7.51 -51.93 -0.39 0.19 16 42 H 0.11 0.64 7.47 -51.93 -0.39 0.26 16 43 H 0.08 0.61 8.09 -51.93 -0.42 0.19 16 44 H 0.08 0.41 7.96 -51.93 -0.41 0.00 16 45 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 46 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 47 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.09 0.83 7.43 -51.93 -0.39 0.44 16 LS Contribution 391.39 15.07 5.90 5.90 Total: -1.00 -35.48 391.39 -9.75 -45.23 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -7.75 Total: 2.81 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: -0.92 Total: -8.90 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: 0.04 Total: -41.49 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: 0.17 Total: -18.05 kcal Atomic # 14 Polarization: 24.75 SS G_CDS: -5.09 Total: 19.67 kcal Atomic # 16 Polarization: -3.06 SS G_CDS: -2.11 Total: -5.16 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.48 -9.75 -45.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074842745.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.263 kcal (2) G-P(sol) polarization free energy of solvation -35.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds