Wall clock time and date at job start Sat Apr 11 2020 06:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.58558 * 2 1 4 4 C 1.53199 * 109.70331 * 239.64480 * 2 1 3 5 5 C 1.53039 * 109.30978 * 185.50659 * 4 2 1 6 6 H 1.09006 * 109.44419 * 181.37708 * 5 4 2 7 7 N 1.46500 * 109.46249 * 301.34274 * 5 4 2 8 8 C 1.34776 * 119.99916 * 205.06891 * 7 5 4 9 9 O 1.21279 * 120.00224 * 0.02562 * 8 7 5 10 10 C 1.50704 * 119.99585 * 179.97438 * 8 7 5 11 11 S 1.80999 * 109.47034 * 180.02562 * 10 8 7 12 12 C 1.76195 * 100.00260 * 180.02562 * 11 10 8 13 13 H 1.08006 * 119.99713 * 0.02562 * 12 11 10 14 14 C 1.38795 * 120.00058 * 180.02562 * 12 11 10 15 15 N 1.31630 * 120.00029 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99725 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.47261 * 269.99705 * 16 14 12 18 18 H 1.48491 * 109.47311 * 29.99871 * 16 14 12 19 19 H 1.48505 * 109.47128 * 150.00202 * 16 14 12 20 20 C 1.53045 * 109.53954 * 61.36992 * 5 4 2 21 21 C 1.53190 * 109.30640 * 298.62956 * 20 5 4 22 22 N 1.46925 * 109.58834 * 120.28805 * 2 1 3 23 23 C 1.34784 * 120.63146 * 353.51373 * 22 2 1 24 24 O 1.21281 * 119.99550 * 354.25415 * 23 22 2 25 25 C 1.50691 * 120.00187 * 174.25424 * 23 22 2 26 26 C 1.53779 * 113.61445 * 277.49713 * 25 23 22 27 27 C 1.53782 * 87.08490 * 220.01652 * 26 25 23 28 28 C 1.53780 * 113.61678 * 179.97438 * 25 23 22 29 29 H 1.09001 * 109.47293 * 305.47014 * 1 2 3 30 30 H 1.09000 * 109.47201 * 65.47338 * 1 2 3 31 31 H 1.09006 * 109.46638 * 185.47525 * 1 2 3 32 32 H 1.08998 * 109.49490 * 65.55606 * 4 2 1 33 33 H 1.08998 * 109.49410 * 305.46001 * 4 2 1 34 34 H 0.97000 * 119.99555 * 25.07433 * 7 5 4 35 35 H 1.09005 * 109.46830 * 60.00941 * 10 8 7 36 36 H 1.08993 * 109.47431 * 300.00638 * 10 8 7 37 37 H 0.96997 * 120.00115 * 0.02562 * 15 14 12 38 38 H 1.08995 * 109.49746 * 58.58074 * 20 5 4 39 39 H 1.09000 * 109.49720 * 178.64932 * 20 5 4 40 40 H 1.09004 * 109.58020 * 174.42396 * 21 20 5 41 41 H 1.08996 * 109.59116 * 294.84767 * 21 20 5 42 42 H 1.09002 * 112.85050 * 48.80563 * 25 23 22 43 43 H 1.08994 * 113.61734 * 334.56729 * 26 25 23 44 44 H 1.09006 * 113.61234 * 105.47081 * 26 25 23 45 45 H 1.09005 * 113.61560 * 270.88975 * 27 26 25 46 46 H 1.08991 * 113.61256 * 139.97840 * 27 26 25 47 47 H 1.08999 * 113.61392 * 254.53292 * 28 25 23 48 48 H 1.09000 * 113.61349 * 25.34885 * 28 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0465 -0.7289 -1.2446 5 6 3.5706 -0.8443 -1.1674 6 1 3.9427 -1.3409 -2.0636 7 7 4.1573 0.4947 -1.0721 8 6 5.4210 0.7079 -1.4893 9 8 6.0723 -0.2085 -1.9440 10 6 6.0243 2.0855 -1.3918 11 16 7.7187 2.0485 -2.0271 12 6 8.1679 3.7369 -1.7994 13 1 7.4586 4.4318 -1.3745 14 6 9.4332 4.1739 -2.1660 15 7 10.2978 3.3268 -2.6834 16 14 9.9097 5.9638 -1.9239 17 1 9.5608 6.7381 -3.1422 18 1 9.1757 6.5181 -0.7581 19 1 11.3714 6.0583 -1.6792 20 6 3.9602 -1.6608 0.0670 21 6 3.4654 -0.9425 1.3263 22 7 2.0226 -0.6981 1.1953 23 6 1.1672 -1.1062 2.1536 24 8 -0.0064 -0.8077 2.0859 25 6 1.6689 -1.9331 3.3091 26 6 1.7891 -3.4321 2.9875 27 6 1.2410 -3.6987 4.3994 28 6 0.5707 -2.3168 4.3149 29 1 -0.3634 0.5963 0.8369 30 1 -0.3633 0.4266 -0.9349 31 1 -0.3633 -1.0231 0.0981 32 1 1.7689 -0.1672 -2.1365 33 1 1.6080 -1.7257 -1.2905 34 1 3.6363 1.2277 -0.7087 35 1 6.0336 2.4051 -0.3497 36 1 5.4309 2.7846 -1.9809 37 1 10.0505 2.3973 -2.8088 38 1 3.5037 -2.6488 0.0086 39 1 5.0447 -1.7629 0.1082 40 1 3.6525 -1.5666 2.2002 41 1 3.9886 0.0076 1.4345 42 1 2.5598 -1.5124 3.7754 43 1 1.1228 -3.7625 2.1908 44 1 2.8168 -3.7676 2.8476 45 1 2.0155 -3.7620 5.1638 46 1 0.5325 -4.5258 4.4436 47 1 0.6149 -1.7521 5.2462 48 1 -0.4292 -2.3407 3.8815 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074842746.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:00 Heat of formation + Delta-G solvation = -50.480187 kcal Electronic energy + Delta-G solvation = -27961.161470 eV Core-core repulsion = 24142.930003 eV Total energy + Delta-G solvation = -3818.231467 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.30577 -39.75206 -38.38441 -37.18074 -34.43321 -33.15264 -32.56024 -31.70272 -29.07354 -27.89285 -26.83827 -26.03882 -24.94325 -24.68688 -22.66868 -21.56907 -20.73129 -19.79654 -18.81442 -18.39620 -17.51763 -16.71682 -16.57697 -16.22840 -15.71628 -15.44927 -15.19470 -14.89319 -14.48323 -14.14143 -14.08940 -13.87600 -13.82432 -13.37168 -13.13331 -12.91856 -12.74884 -12.54804 -12.52020 -12.41405 -12.22439 -12.05288 -11.89522 -11.79344 -11.51966 -11.37327 -11.20957 -10.97051 -10.93430 -10.88988 -10.80341 -10.21516 -9.62539 -9.55081 -9.27077 -9.12134 -9.03031 -8.81711 -8.26027 -6.70712 -6.65273 -4.03442 2.32224 2.62666 2.86993 2.92864 3.32618 3.36948 3.50511 3.56167 4.07643 4.12784 4.20688 4.21905 4.35797 4.40807 4.44014 4.56283 4.65180 4.76387 4.83706 4.96576 5.05508 5.07087 5.14470 5.19410 5.24869 5.28937 5.36698 5.40282 5.46512 5.47454 5.50490 5.56092 5.59784 5.64895 5.68527 5.71646 5.80728 5.82321 5.92578 5.97011 5.99759 6.10435 6.38718 6.51158 7.11954 7.54897 7.89355 7.93390 8.45205 8.47164 9.23764 10.78718 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019019 B = 0.002259 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.834364 B =12393.238413 C =12551.028903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.141 3.859 3 H 0.070 0.930 4 C -0.138 4.138 5 C 0.147 3.853 6 H 0.093 0.907 7 N -0.733 5.733 8 C 0.532 3.468 9 O -0.516 6.516 10 C -0.132 4.132 11 S -0.115 6.115 12 C -0.608 4.608 13 H 0.066 0.934 14 C 0.035 3.965 15 N -0.884 5.884 16 Si 1.087 2.913 17 H -0.284 1.284 18 H -0.287 1.287 19 H -0.280 1.280 20 C -0.146 4.146 21 C 0.109 3.891 22 N -0.607 5.607 23 C 0.526 3.474 24 O -0.534 6.534 25 C -0.142 4.142 26 C -0.122 4.122 27 C -0.142 4.142 28 C -0.118 4.118 29 H 0.079 0.921 30 H 0.045 0.955 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.396 0.604 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.278 0.722 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.072 0.928 42 H 0.111 0.889 43 H 0.084 0.916 44 H 0.075 0.925 45 H 0.083 0.917 46 H 0.071 0.929 47 H 0.070 0.930 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.085 -12.137 11.827 27.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.038 3.962 3 H 0.088 0.912 4 C -0.176 4.176 5 C 0.042 3.958 6 H 0.111 0.889 7 N -0.388 5.388 8 C 0.318 3.682 9 O -0.390 6.390 10 C -0.283 4.283 11 S 0.111 5.889 12 C -0.756 4.756 13 H 0.084 0.916 14 C -0.175 4.175 15 N -0.518 5.518 16 Si 0.913 3.087 17 H -0.210 1.210 18 H -0.213 1.213 19 H -0.205 1.205 20 C -0.185 4.185 21 C -0.014 4.014 22 N -0.340 5.340 23 C 0.315 3.685 24 O -0.412 6.412 25 C -0.164 4.164 26 C -0.159 4.159 27 C -0.180 4.180 28 C -0.155 4.155 29 H 0.098 0.902 30 H 0.064 0.936 31 H 0.083 0.917 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.231 0.769 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.091 0.909 42 H 0.129 0.871 43 H 0.102 0.898 44 H 0.094 0.906 45 H 0.102 0.898 46 H 0.090 0.910 47 H 0.089 0.911 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -19.377 -12.447 10.810 25.441 hybrid contribution -2.065 0.574 0.884 2.318 sum -21.441 -11.873 11.695 27.156 Atomic orbital electron populations 1.22184 0.92226 1.03680 1.01276 1.21257 0.96039 0.95063 0.83819 0.91205 1.22307 0.94635 1.02513 0.98192 1.20827 0.92122 0.83886 0.98944 0.88924 1.46148 1.14879 1.11154 1.66657 1.20286 0.80917 0.90457 0.76498 1.90700 1.60255 1.44633 1.43445 1.23323 1.03660 0.96013 1.05301 1.84807 1.06009 1.15730 1.82343 1.23726 1.05149 0.93744 1.52944 0.91603 1.26054 0.91578 1.06805 0.93096 1.70772 1.36486 1.05930 1.38651 0.83293 0.76373 0.72602 0.76463 1.21037 1.21303 1.20490 1.22306 1.02761 0.99045 0.94428 1.21763 0.79649 1.01126 0.98884 1.48210 1.07456 1.57907 1.20462 1.20507 0.85839 0.79129 0.83024 1.90726 1.17315 1.56423 1.76724 1.22861 1.01429 0.96052 0.96014 1.22811 1.02179 0.92826 0.98119 1.22841 1.00463 0.97776 0.96889 1.22811 0.98433 0.96063 0.98224 0.90207 0.93625 0.91728 0.89841 0.89982 0.76898 0.89072 0.89027 0.90963 0.90609 0.89577 0.89477 0.90924 0.87090 0.89771 0.90624 0.89841 0.90989 0.91105 0.88761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 7.62 37.16 0.28 -1.02 16 2 C 0.14 1.24 3.19 -67.60 -0.22 1.02 16 3 H 0.07 0.59 6.64 -51.93 -0.34 0.25 16 4 C -0.14 -1.14 5.08 -26.61 -0.14 -1.27 16 5 C 0.15 1.52 2.78 -67.89 -0.19 1.33 16 6 H 0.09 1.14 7.58 -51.93 -0.39 0.74 16 7 N -0.73 -8.75 4.26 -53.76 -0.23 -8.98 16 8 C 0.53 9.15 7.81 -10.98 -0.09 9.06 16 9 O -0.52 -10.84 15.52 5.56 0.09 -10.75 16 10 C -0.13 -2.55 6.16 36.01 0.22 -2.33 16 11 S -0.12 -3.03 19.60 -107.50 -2.11 -5.13 16 12 C -0.61 -17.28 9.50 30.94 0.29 -16.98 16 13 H 0.07 1.80 7.80 -52.48 -0.41 1.39 16 14 C 0.04 1.01 5.49 -17.43 -0.10 0.92 16 15 N -0.88 -27.26 13.67 55.49 0.76 -26.50 16 16 Si 1.09 24.77 29.92 -169.99 -5.09 19.68 16 17 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 18 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 19 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 20 C -0.15 -1.35 5.77 -26.61 -0.15 -1.50 16 21 C 0.11 0.89 6.08 -3.71 -0.02 0.86 16 22 N -0.61 -5.34 2.97 -165.22 -0.49 -5.83 16 23 C 0.53 5.14 7.03 -10.99 -0.08 5.06 16 24 O -0.53 -6.62 11.46 5.56 0.06 -6.55 16 25 C -0.14 -1.04 2.76 -90.97 -0.25 -1.29 16 26 C -0.12 -0.75 7.46 -25.92 -0.19 -0.95 16 27 C -0.14 -0.80 8.08 -25.89 -0.21 -1.01 16 28 C -0.12 -0.84 7.41 -25.90 -0.19 -1.03 16 29 H 0.08 0.90 6.54 -51.93 -0.34 0.56 16 30 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.69 6.95 -51.93 -0.36 0.33 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.40 3.92 6.87 -40.82 -0.28 3.64 16 35 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 36 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 37 H 0.28 8.74 7.12 -40.82 -0.29 8.45 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.09 0.58 5.68 -51.93 -0.30 0.28 16 41 H 0.07 0.65 7.74 -51.93 -0.40 0.25 16 42 H 0.11 0.69 7.21 -51.93 -0.37 0.32 16 43 H 0.08 0.58 8.09 -51.93 -0.42 0.16 16 44 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 48 H 0.09 0.81 7.43 -51.93 -0.39 0.42 16 LS Contribution 386.17 15.07 5.82 5.82 Total: -1.00 -34.54 386.17 -9.95 -44.49 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -7.74 Total: 2.89 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: -1.02 Total: -9.13 kcal Atomic # 7 Polarization: -41.35 SS G_CDS: 0.04 Total: -41.31 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: 0.15 Total: -17.31 kcal Atomic # 14 Polarization: 24.77 SS G_CDS: -5.09 Total: 19.68 kcal Atomic # 16 Polarization: -3.03 SS G_CDS: -2.11 Total: -5.13 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.54 -9.95 -44.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074842746.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.993 kcal (2) G-P(sol) polarization free energy of solvation -34.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds