Wall clock time and date at job start Sat Apr 11 2020 06:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.58558 * 2 1 4 4 C 1.53199 * 109.70331 * 239.64480 * 2 1 3 5 5 C 1.53039 * 109.30978 * 185.50659 * 4 2 1 6 6 H 1.09006 * 109.44419 * 181.37708 * 5 4 2 7 7 N 1.46500 * 109.46249 * 301.34274 * 5 4 2 8 8 C 1.34776 * 119.99916 * 205.06891 * 7 5 4 9 9 O 1.21279 * 120.00224 * 0.02562 * 8 7 5 10 10 C 1.50704 * 119.99585 * 179.97438 * 8 7 5 11 11 S 1.80999 * 109.47034 * 180.02562 * 10 8 7 12 12 C 1.76195 * 100.00260 * 180.02562 * 11 10 8 13 13 H 1.08006 * 119.99713 * 0.02562 * 12 11 10 14 14 C 1.38795 * 120.00058 * 180.02562 * 12 11 10 15 15 N 1.31630 * 120.00029 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99725 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.47261 * 269.99705 * 16 14 12 18 18 H 1.48491 * 109.47311 * 29.99871 * 16 14 12 19 19 H 1.48505 * 109.47128 * 150.00202 * 16 14 12 20 20 C 1.53045 * 109.53954 * 61.36992 * 5 4 2 21 21 C 1.53190 * 109.30640 * 298.62956 * 20 5 4 22 22 N 1.46925 * 109.58834 * 120.28805 * 2 1 3 23 23 C 1.34784 * 120.63146 * 353.51373 * 22 2 1 24 24 O 1.21281 * 119.99550 * 354.25415 * 23 22 2 25 25 C 1.50691 * 120.00187 * 174.25424 * 23 22 2 26 26 C 1.53779 * 113.61445 * 277.49713 * 25 23 22 27 27 C 1.53782 * 87.08490 * 220.01652 * 26 25 23 28 28 C 1.53780 * 113.61678 * 179.97438 * 25 23 22 29 29 H 1.09001 * 109.47293 * 305.47014 * 1 2 3 30 30 H 1.09000 * 109.47201 * 65.47338 * 1 2 3 31 31 H 1.09006 * 109.46638 * 185.47525 * 1 2 3 32 32 H 1.08998 * 109.49490 * 65.55606 * 4 2 1 33 33 H 1.08998 * 109.49410 * 305.46001 * 4 2 1 34 34 H 0.97000 * 119.99555 * 25.07433 * 7 5 4 35 35 H 1.09005 * 109.46830 * 60.00941 * 10 8 7 36 36 H 1.08993 * 109.47431 * 300.00638 * 10 8 7 37 37 H 0.96997 * 120.00115 * 0.02562 * 15 14 12 38 38 H 1.08995 * 109.49746 * 58.58074 * 20 5 4 39 39 H 1.09000 * 109.49720 * 178.64932 * 20 5 4 40 40 H 1.09004 * 109.58020 * 174.42396 * 21 20 5 41 41 H 1.08996 * 109.59116 * 294.84767 * 21 20 5 42 42 H 1.09002 * 112.85050 * 48.80563 * 25 23 22 43 43 H 1.08994 * 113.61734 * 334.56729 * 26 25 23 44 44 H 1.09006 * 113.61234 * 105.47081 * 26 25 23 45 45 H 1.09005 * 113.61560 * 270.88975 * 27 26 25 46 46 H 1.08991 * 113.61256 * 139.97840 * 27 26 25 47 47 H 1.08999 * 113.61392 * 254.53292 * 28 25 23 48 48 H 1.09000 * 113.61349 * 25.34885 * 28 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0465 -0.7289 -1.2446 5 6 3.5706 -0.8443 -1.1674 6 1 3.9427 -1.3409 -2.0636 7 7 4.1573 0.4947 -1.0721 8 6 5.4210 0.7079 -1.4893 9 8 6.0723 -0.2085 -1.9440 10 6 6.0243 2.0855 -1.3918 11 16 7.7187 2.0485 -2.0271 12 6 8.1679 3.7369 -1.7994 13 1 7.4586 4.4318 -1.3745 14 6 9.4332 4.1739 -2.1660 15 7 10.2978 3.3268 -2.6834 16 14 9.9097 5.9638 -1.9239 17 1 9.5608 6.7381 -3.1422 18 1 9.1757 6.5181 -0.7581 19 1 11.3714 6.0583 -1.6792 20 6 3.9602 -1.6608 0.0670 21 6 3.4654 -0.9425 1.3263 22 7 2.0226 -0.6981 1.1953 23 6 1.1672 -1.1062 2.1536 24 8 -0.0064 -0.8077 2.0859 25 6 1.6689 -1.9331 3.3091 26 6 1.7891 -3.4321 2.9875 27 6 1.2410 -3.6987 4.3994 28 6 0.5707 -2.3168 4.3149 29 1 -0.3634 0.5963 0.8369 30 1 -0.3633 0.4266 -0.9349 31 1 -0.3633 -1.0231 0.0981 32 1 1.7689 -0.1672 -2.1365 33 1 1.6080 -1.7257 -1.2905 34 1 3.6363 1.2277 -0.7087 35 1 6.0336 2.4051 -0.3497 36 1 5.4309 2.7846 -1.9809 37 1 10.0505 2.3973 -2.8088 38 1 3.5037 -2.6488 0.0086 39 1 5.0447 -1.7629 0.1082 40 1 3.6525 -1.5666 2.2002 41 1 3.9886 0.0076 1.4345 42 1 2.5598 -1.5124 3.7754 43 1 1.1228 -3.7625 2.1908 44 1 2.8168 -3.7676 2.8476 45 1 2.0155 -3.7620 5.1638 46 1 0.5325 -4.5258 4.4436 47 1 0.6149 -1.7521 5.2462 48 1 -0.4292 -2.3407 3.8815 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074842746.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:59 Heat of formation + Delta-G solvation = -72.079641 kcal Electronic energy + Delta-G solvation = -27962.098093 eV Core-core repulsion = 24142.930003 eV Total energy + Delta-G solvation = -3819.168090 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.07427 -40.83521 -39.21385 -38.02784 -35.45784 -34.74289 -33.88832 -32.82195 -30.39970 -28.70427 -27.46152 -27.07131 -26.55255 -25.51689 -23.36378 -22.64129 -21.63012 -20.54776 -20.43331 -19.55218 -18.24356 -18.05651 -17.46777 -17.23112 -16.64492 -16.49076 -16.22443 -15.88695 -15.70468 -15.54667 -15.15420 -15.11949 -14.74840 -14.56884 -14.42592 -13.96326 -13.77275 -13.69854 -13.51211 -13.33572 -13.24431 -13.10439 -12.75421 -12.73539 -12.66503 -12.17447 -12.03869 -12.00508 -11.94477 -11.75240 -11.53446 -11.40367 -11.29967 -11.10352 -11.01528 -10.31534 -10.21154 -10.02981 -9.59862 -8.91799 -8.85198 -6.26523 1.21329 1.52245 1.53933 1.59479 1.61203 1.79424 1.92603 2.19285 2.34717 3.02745 3.13982 3.42654 3.54920 3.63741 3.67897 3.72294 3.81486 3.88875 3.91822 3.98323 4.08462 4.14910 4.17411 4.30554 4.34692 4.39353 4.56958 4.67256 4.71421 4.76118 4.79520 4.84341 4.86028 4.88936 4.93706 5.03211 5.04917 5.08528 5.15883 5.19374 5.32235 5.45039 5.51100 5.64295 5.65121 6.16167 6.37575 6.42978 7.06513 7.16368 7.20078 8.51864 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019019 B = 0.002259 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.834364 B =12393.238413 C =12551.028903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.138 3.862 3 H 0.077 0.923 4 C -0.125 4.125 5 C 0.146 3.854 6 H 0.075 0.925 7 N -0.706 5.706 8 C 0.539 3.461 9 O -0.559 6.559 10 C -0.112 4.112 11 S -0.191 6.191 12 C -0.613 4.613 13 H 0.073 0.927 14 C -0.019 4.019 15 N -0.914 5.914 16 Si 1.137 2.863 17 H -0.269 1.269 18 H -0.263 1.263 19 H -0.279 1.279 20 C -0.140 4.140 21 C 0.112 3.888 22 N -0.604 5.604 23 C 0.521 3.479 24 O -0.565 6.565 25 C -0.143 4.143 26 C -0.118 4.118 27 C -0.134 4.134 28 C -0.123 4.123 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.410 0.590 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.261 0.739 38 H 0.091 0.909 39 H 0.066 0.934 40 H 0.107 0.893 41 H 0.068 0.932 42 H 0.127 0.873 43 H 0.074 0.926 44 H 0.089 0.911 45 H 0.097 0.903 46 H 0.074 0.926 47 H 0.074 0.926 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.290 -11.543 13.109 28.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.035 3.965 3 H 0.095 0.905 4 C -0.163 4.163 5 C 0.041 3.959 6 H 0.093 0.907 7 N -0.361 5.361 8 C 0.324 3.676 9 O -0.437 6.437 10 C -0.263 4.263 11 S 0.036 5.964 12 C -0.761 4.761 13 H 0.092 0.908 14 C -0.222 4.222 15 N -0.549 5.549 16 Si 0.955 3.045 17 H -0.194 1.194 18 H -0.187 1.187 19 H -0.205 1.205 20 C -0.179 4.179 21 C -0.010 4.010 22 N -0.337 5.337 23 C 0.311 3.689 24 O -0.445 6.445 25 C -0.164 4.164 26 C -0.156 4.156 27 C -0.171 4.171 28 C -0.161 4.161 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.248 0.752 35 H 0.128 0.872 36 H 0.126 0.874 37 H 0.072 0.928 38 H 0.110 0.890 39 H 0.085 0.915 40 H 0.125 0.875 41 H 0.086 0.914 42 H 0.145 0.855 43 H 0.093 0.907 44 H 0.108 0.892 45 H 0.116 0.884 46 H 0.093 0.907 47 H 0.093 0.907 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -20.640 -11.864 12.112 26.711 hybrid contribution -1.852 0.322 0.515 1.950 sum -22.493 -11.542 12.627 28.259 Atomic orbital electron populations 1.22020 0.92685 1.02494 1.01128 1.21308 0.95602 0.95523 0.84033 0.90533 1.22216 0.92598 1.03193 0.98331 1.20971 0.93280 0.82636 0.98971 0.90661 1.45895 1.12968 1.12566 1.64668 1.19901 0.82148 0.88971 0.76573 1.90697 1.61722 1.45459 1.45819 1.23240 0.98885 0.98142 1.06058 1.85017 1.12182 1.15703 1.83536 1.24053 1.05448 0.94392 1.52180 0.90831 1.27783 0.91838 1.10623 0.92004 1.70891 1.37428 1.05537 1.41044 0.82697 0.76335 0.67579 0.77839 1.19388 1.18744 1.20460 1.22232 1.01648 0.99826 0.94237 1.21782 0.78988 1.01171 0.99090 1.48241 1.07612 1.57527 1.20298 1.20963 0.85496 0.78911 0.83540 1.90725 1.18653 1.57607 1.77517 1.22965 1.01905 0.96362 0.95147 1.22797 1.02807 0.91758 0.98188 1.22833 1.00584 0.96787 0.96888 1.22796 0.97575 0.97443 0.98262 0.92121 0.92265 0.93101 0.88915 0.89139 0.75224 0.87195 0.87374 0.92769 0.89003 0.91500 0.87460 0.91366 0.85493 0.90733 0.89233 0.88423 0.90688 0.90678 0.90743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 7.62 71.98 0.55 -1.70 16 2 C 0.14 2.13 3.19 44.98 0.14 2.28 16 3 H 0.08 1.09 6.64 -2.39 -0.02 1.08 16 4 C -0.12 -1.77 5.08 30.67 0.16 -1.62 16 5 C 0.15 2.76 2.78 45.02 0.13 2.89 16 6 H 0.08 1.77 7.58 -2.38 -0.02 1.76 16 7 N -0.71 -15.48 4.26 -442.39 -1.89 -17.37 16 8 C 0.54 17.97 7.81 87.66 0.68 18.66 16 9 O -0.56 -23.65 15.52 -3.03 -0.05 -23.69 16 10 C -0.11 -4.19 6.16 71.24 0.44 -3.75 16 11 S -0.19 -10.21 19.60 -56.49 -1.11 -11.32 16 12 C -0.61 -34.75 9.50 67.95 0.65 -34.10 16 13 H 0.07 3.92 7.80 -2.91 -0.02 3.90 16 14 C -0.02 -1.10 5.49 84.86 0.47 -0.64 16 15 N -0.91 -57.39 13.67 21.65 0.30 -57.09 16 16 Si 1.14 48.82 29.92 68.60 2.05 50.87 16 17 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 18 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 19 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 20 C -0.14 -2.33 5.77 30.67 0.18 -2.15 16 21 C 0.11 1.56 6.08 86.36 0.52 2.08 16 22 N -0.60 -9.42 2.97 -795.02 -2.36 -11.78 16 23 C 0.52 9.46 7.03 87.65 0.62 10.07 16 24 O -0.57 -13.80 11.46 -3.03 -0.03 -13.83 16 25 C -0.14 -1.81 2.76 -11.02 -0.03 -1.84 16 26 C -0.12 -1.20 7.46 31.12 0.23 -0.97 16 27 C -0.13 -1.22 8.08 31.14 0.25 -0.97 16 28 C -0.12 -1.61 7.41 31.14 0.23 -1.38 16 29 H 0.06 1.34 6.54 -2.39 -0.02 1.32 16 30 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.05 1.05 6.95 -2.38 -0.02 1.03 16 32 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.41 6.94 6.87 -92.71 -0.64 6.30 16 35 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 36 H 0.11 3.71 8.14 -2.40 -0.02 3.69 16 37 H 0.26 17.03 7.12 -92.71 -0.66 16.37 16 38 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.11 1.09 5.68 -2.39 -0.01 1.08 16 41 H 0.07 1.05 7.74 -2.39 -0.02 1.03 16 42 H 0.13 1.21 7.21 -2.39 -0.02 1.19 16 43 H 0.07 0.92 8.09 -2.39 -0.02 0.90 16 44 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 45 H 0.10 0.65 8.14 -2.38 -0.02 0.63 16 46 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 47 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 48 H 0.07 1.28 7.43 -2.39 -0.02 1.27 16 Total: -1.00 -77.33 386.17 2.55 -74.77 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: 0.43 Total: 22.58 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: 5.21 Total: -13.14 kcal Atomic # 7 Polarization: -82.29 SS G_CDS: -3.95 Total: -86.24 kcal Atomic # 8 Polarization: -37.44 SS G_CDS: -0.08 Total: -37.52 kcal Atomic # 14 Polarization: 48.82 SS G_CDS: 2.05 Total: 50.87 kcal Atomic # 16 Polarization: -10.21 SS G_CDS: -1.11 Total: -11.32 kcal Total: -77.33 2.55 -74.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074842746.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.693 kcal (2) G-P(sol) polarization free energy of solvation -77.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds