Wall clock time and date at job start Sat Apr 11 2020 06:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50698 * 120.00095 * 2 1 4 4 C 1.52991 * 109.47387 * 124.99882 * 3 2 1 5 5 C 1.50698 * 109.47387 * 179.97438 * 4 3 2 6 6 O 1.21286 * 120.00023 * 0.02562 * 5 4 3 7 7 N 1.34776 * 120.00310 * 179.97438 * 5 4 3 8 8 C 1.46504 * 120.00300 * 180.02562 * 7 5 4 9 9 H 1.09009 * 109.44371 * 325.03344 * 8 7 5 10 10 C 1.53035 * 109.46364 * 84.99631 * 8 7 5 11 11 C 1.53192 * 109.31669 * 181.38922 * 10 8 7 12 12 N 1.46927 * 108.77109 * 305.36455 * 11 10 8 13 13 C 1.34778 * 120.62830 * 233.60464 * 12 11 10 14 14 O 1.21289 * 119.99621 * 185.71509 * 13 12 11 15 15 C 1.50692 * 120.00156 * 5.72002 * 13 12 11 16 16 S 1.81006 * 109.47169 * 179.97438 * 15 13 12 17 17 C 1.76201 * 100.00021 * 179.97438 * 16 15 13 18 18 H 1.07996 * 119.99727 * 359.97438 * 17 16 15 19 19 C 1.38798 * 120.00055 * 179.97438 * 17 16 15 20 20 N 1.31640 * 119.99646 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00289 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47106 * 90.00094 * 21 19 17 23 23 H 1.48493 * 109.47004 * 210.00237 * 21 19 17 24 24 H 1.48503 * 109.46748 * 330.00340 * 21 19 17 25 25 C 1.46928 * 118.73734 * 53.61114 * 12 11 10 26 26 H 1.08993 * 109.58705 * 66.17709 * 25 12 11 27 27 C 1.53004 * 109.58518 * 186.60285 * 25 12 11 28 28 C 1.53038 * 109.46193 * 205.06872 * 8 7 5 29 29 H 1.07999 * 120.00296 * 0.02562 * 1 2 3 30 30 H 1.08001 * 119.99997 * 180.02562 * 1 2 3 31 31 H 1.08003 * 120.00420 * 180.02562 * 2 1 3 32 32 H 1.09000 * 109.47144 * 4.99314 * 3 2 1 33 33 H 1.09005 * 109.47152 * 244.99897 * 3 2 1 34 34 H 1.09001 * 109.47329 * 60.00390 * 4 3 2 35 35 H 1.09005 * 109.46987 * 300.00117 * 4 3 2 36 36 H 0.97006 * 119.99985 * 359.97438 * 7 5 4 37 37 H 1.09002 * 109.49538 * 61.43230 * 10 8 7 38 38 H 1.09001 * 109.52375 * 301.35734 * 10 8 7 39 39 H 1.08998 * 109.58263 * 65.15296 * 11 10 8 40 40 H 1.09004 * 109.58728 * 185.57857 * 11 10 8 41 41 H 1.09003 * 109.47199 * 299.99693 * 15 13 12 42 42 H 1.08994 * 109.47306 * 59.99585 * 15 13 12 43 43 H 0.96993 * 119.99428 * 179.97438 * 20 19 17 44 44 H 1.09002 * 109.47012 * 173.75677 * 27 25 12 45 45 H 1.09006 * 109.46684 * 293.75722 * 27 25 12 46 46 H 1.08998 * 109.47248 * 53.75297 * 27 25 12 47 47 H 1.09000 * 109.49812 * 298.56391 * 28 8 7 48 48 H 1.08997 * 109.49948 * 58.65780 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0349 1.3331 1.1816 5 6 3.7889 2.6379 1.1812 6 8 3.5704 3.4644 0.3208 7 7 4.7053 2.8870 2.1375 8 6 5.4379 4.1557 2.1375 9 1 5.6192 4.4701 1.1096 10 6 4.6105 5.2223 2.8583 11 6 5.3640 6.5558 2.8261 12 7 6.7072 6.3535 3.3861 13 6 7.1543 7.1276 4.3947 14 8 8.2998 7.0210 4.7790 15 6 6.2311 8.1255 5.0450 16 16 7.1187 9.0039 6.3553 17 6 5.8405 10.0739 6.9264 18 1 4.8637 10.0413 6.4671 19 6 6.0892 10.9586 7.9666 20 7 7.2801 10.9985 8.5261 21 14 4.7341 12.0924 8.5726 22 1 3.9738 11.4200 9.6565 23 1 5.3343 13.3468 9.0935 24 1 3.8168 12.4118 7.4492 25 6 7.5536 5.2914 2.8256 26 1 7.8142 5.5368 1.7962 27 6 8.8277 5.1559 3.6619 28 6 6.7756 3.9722 2.8579 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3585 2.1316 0.0894 33 1 2.6213 1.4026 -0.9314 34 1 3.7399 0.5066 1.0920 35 1 2.4771 1.2356 2.1130 36 1 4.8794 2.2265 2.8263 37 1 4.4498 4.9202 3.8932 38 1 3.6483 5.3360 2.3590 39 1 5.4459 6.9042 1.7965 40 1 4.8268 7.2936 3.4221 41 1 5.8845 8.8400 4.2984 42 1 5.3754 7.6035 5.4731 43 1 7.4540 11.6170 9.2527 44 1 9.4014 4.2971 3.3136 45 1 9.4279 6.0600 3.5586 46 1 8.5615 5.0144 4.7094 47 1 6.5946 3.6818 3.8928 48 1 7.3546 3.1959 2.3578 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074876801.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:13 Heat of formation + Delta-G solvation = -54.427346 kcal Electronic energy + Delta-G solvation = -26989.376258 eV Core-core repulsion = 23170.973629 eV Total energy + Delta-G solvation = -3818.402629 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.68107 -39.78168 -37.41150 -35.78144 -34.74134 -33.19576 -32.43415 -31.88688 -30.59836 -28.94839 -27.30652 -25.48394 -25.29669 -23.85627 -22.36547 -21.16438 -20.61328 -20.21058 -19.01760 -17.63698 -17.28092 -16.62881 -16.26167 -16.19173 -16.00277 -15.32115 -15.20426 -14.80980 -14.45458 -14.38024 -14.20040 -13.92246 -13.70330 -13.36171 -13.12001 -12.96295 -12.62241 -12.57619 -12.46803 -12.28787 -12.06251 -11.80771 -11.69947 -11.51875 -11.44944 -11.23580 -11.11416 -11.05735 -11.00942 -10.85190 -10.76006 -10.19383 -9.80666 -9.75683 -9.36465 -9.07131 -8.74170 -8.48456 -8.23126 -6.50376 -6.22367 -3.92681 1.82802 2.33056 2.80155 2.90635 3.07232 3.21728 3.25310 3.29767 3.58158 4.19772 4.24786 4.41159 4.45834 4.54307 4.66702 4.73679 4.83996 4.87268 4.88463 4.95104 5.09612 5.11122 5.12889 5.23076 5.28803 5.40710 5.43835 5.52428 5.54012 5.57467 5.61242 5.72869 5.74333 5.79021 5.85641 5.87420 5.96737 6.12159 6.16588 6.20623 6.26873 6.33431 6.48881 6.81868 7.16196 7.57108 7.59497 7.90990 8.34630 8.58556 9.23145 10.85013 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015007 B = 0.002127 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.379775 B =13161.443496 C =14650.209750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.157 4.157 3 C -0.080 4.080 4 C -0.137 4.137 5 C 0.512 3.488 6 O -0.539 6.539 7 N -0.728 5.728 8 C 0.146 3.854 9 H 0.090 0.910 10 C -0.144 4.144 11 C 0.112 3.888 12 N -0.619 5.619 13 C 0.536 3.464 14 O -0.508 6.508 15 C -0.153 4.153 16 S -0.060 6.060 17 C -0.535 4.535 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.918 3.082 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C 0.152 3.848 26 H 0.070 0.930 27 C -0.139 4.139 28 C -0.138 4.138 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.109 0.891 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.400 0.600 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.268 0.732 44 H 0.040 0.960 45 H 0.083 0.917 46 H 0.068 0.932 47 H 0.074 0.926 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.338 -22.524 -15.953 28.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.175 4.175 3 C -0.117 4.117 4 C -0.177 4.177 5 C 0.299 3.701 6 O -0.416 6.416 7 N -0.379 5.379 8 C 0.041 3.959 9 H 0.108 0.892 10 C -0.184 4.184 11 C -0.012 4.012 12 N -0.356 5.356 13 C 0.324 3.676 14 O -0.382 6.382 15 C -0.304 4.304 16 S 0.166 5.834 17 C -0.683 4.683 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.744 3.256 22 H -0.203 1.203 23 H -0.207 1.207 24 H -0.197 1.197 25 C 0.048 3.952 26 H 0.088 0.912 27 C -0.196 4.196 28 C -0.177 4.177 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.127 0.873 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.234 0.766 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.112 0.888 41 H 0.106 0.894 42 H 0.106 0.894 43 H 0.078 0.922 44 H 0.059 0.941 45 H 0.102 0.898 46 H 0.087 0.913 47 H 0.093 0.907 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.666 -21.987 -15.869 27.923 hybrid contribution -2.311 0.424 0.325 2.372 sum -8.977 -21.563 -15.544 28.056 Atomic orbital electron populations 1.23909 0.96015 1.01993 1.00893 1.22963 0.96105 0.98306 1.00141 1.20501 0.97811 0.95492 0.97917 1.21637 0.99085 0.95552 1.01398 1.20755 0.79521 0.88965 0.80906 1.90721 1.65220 1.48282 1.37359 1.46158 1.41157 1.19914 1.30651 1.20970 0.90748 0.83366 1.00798 0.89225 1.22319 0.99441 0.95044 1.01571 1.21671 0.82694 0.97173 0.99692 1.48205 1.16074 1.34855 1.36460 1.20278 0.88237 0.80609 0.78440 1.90737 1.18149 1.67003 1.62359 1.23613 1.02508 1.00265 1.03995 1.85351 1.17426 1.44341 1.36244 1.22860 0.98985 1.24219 1.22256 0.90988 1.24987 0.96310 0.96771 0.95500 1.70020 1.20550 1.36172 1.23537 0.86177 0.80877 0.79547 0.78970 1.20288 1.20745 1.19690 1.21103 0.90971 0.85316 0.97839 0.91223 1.22212 0.95357 1.01880 1.00117 1.22324 0.95208 0.98548 1.01614 0.88457 0.88471 0.87337 0.90663 0.90204 0.88780 0.88729 0.76564 0.91048 0.90262 0.91180 0.88796 0.89394 0.89424 0.92202 0.94125 0.89788 0.91273 0.90690 0.90262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.07 14.32 29.02 0.42 -0.66 16 2 C -0.16 -0.88 9.52 -36.03 -0.34 -1.23 16 3 C -0.08 -0.53 4.95 -27.89 -0.14 -0.67 16 4 C -0.14 -0.75 5.68 -27.89 -0.16 -0.91 16 5 C 0.51 4.43 7.79 -10.99 -0.09 4.35 16 6 O -0.54 -6.85 15.64 5.55 0.09 -6.77 16 7 N -0.73 -5.25 5.08 -53.76 -0.27 -5.52 16 8 C 0.15 1.30 2.42 -67.89 -0.16 1.13 16 9 H 0.09 0.93 7.58 -51.92 -0.39 0.54 16 10 C -0.14 -1.42 5.65 -26.61 -0.15 -1.57 16 11 C 0.11 1.26 6.35 -3.71 -0.02 1.24 16 12 N -0.62 -8.49 2.97 -165.22 -0.49 -8.99 16 13 C 0.54 9.80 7.52 -10.99 -0.08 9.71 16 14 O -0.51 -10.77 11.43 5.55 0.06 -10.70 16 15 C -0.15 -3.07 4.51 36.00 0.16 -2.90 16 16 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 17 C -0.53 -15.15 9.50 30.94 0.29 -14.86 16 18 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 19 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 20 N -0.87 -26.03 13.22 55.49 0.73 -25.30 16 21 Si 0.92 21.37 29.55 -169.99 -5.02 16.34 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 25 C 0.15 1.76 3.49 -67.60 -0.24 1.52 16 26 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 27 C -0.14 -1.85 7.61 37.16 0.28 -1.56 16 28 C -0.14 -1.20 4.84 -26.61 -0.13 -1.33 16 29 H 0.10 0.55 7.84 -52.49 -0.41 0.14 16 30 H 0.10 0.44 8.06 -52.49 -0.42 0.02 16 31 H 0.11 0.48 8.06 -52.48 -0.42 0.05 16 32 H 0.07 0.60 7.75 -51.93 -0.40 0.19 16 33 H 0.08 0.60 8.10 -51.93 -0.42 0.18 16 34 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.40 1.89 8.60 -40.82 -0.35 1.53 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.09 1.09 5.93 -51.93 -0.31 0.78 16 41 H 0.09 1.65 7.71 -51.92 -0.40 1.25 16 42 H 0.09 1.64 7.92 -51.92 -0.41 1.23 16 43 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.08 1.34 6.57 -51.93 -0.34 1.00 16 46 H 0.07 1.07 6.93 -51.93 -0.36 0.71 16 47 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 399.87 15.07 6.03 6.03 Total: -1.00 -34.73 399.87 -9.54 -44.27 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -7.99 Total: 0.23 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -0.45 Total: -5.76 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: -0.03 Total: -39.80 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: 0.15 Total: -17.47 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.73 -9.54 -44.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074876801.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.161 kcal (2) G-P(sol) polarization free energy of solvation -34.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds