Wall clock time and date at job start Sat Apr 11 2020 06:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09008 * 109.58535 * 2 1 4 4 C 1.53196 * 109.70623 * 120.35488 * 2 1 3 5 5 C 1.53039 * 109.31593 * 174.49823 * 4 2 1 6 6 H 1.09000 * 109.45025 * 58.64222 * 5 4 2 7 7 N 1.46496 * 109.46411 * 178.61626 * 5 4 2 8 8 C 1.34778 * 120.00132 * 205.06689 * 7 5 4 9 9 O 1.21278 * 119.99892 * 359.97438 * 8 7 5 10 10 C 1.50702 * 119.99803 * 179.97438 * 8 7 5 11 11 C 1.53005 * 115.55115 * 34.32667 * 10 8 7 12 12 C 1.52996 * 117.49685 * 248.62223 * 10 8 7 13 13 C 1.52994 * 117.49683 * 179.97438 * 10 8 7 14 14 C 1.53047 * 109.53301 * 298.63361 * 5 4 2 15 15 C 1.53188 * 109.31165 * 61.36796 * 14 5 4 16 16 N 1.46927 * 109.59011 * 239.71707 * 2 1 3 17 17 C 1.34773 * 120.62641 * 6.47869 * 16 2 1 18 18 O 1.21280 * 120.00485 * 5.74005 * 17 16 2 19 19 C 1.50704 * 119.99503 * 185.72901 * 17 16 2 20 20 S 1.81002 * 109.46703 * 180.02562 * 19 17 16 21 21 C 1.76200 * 99.99938 * 180.02562 * 20 19 17 22 22 H 1.07998 * 120.00181 * 0.02562 * 21 20 19 23 23 C 1.38804 * 120.00093 * 180.02562 * 21 20 19 24 24 N 1.31627 * 119.99838 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99894 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47086 * 59.99820 * 25 23 21 27 27 H 1.48505 * 109.46951 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.46959 * 299.99768 * 25 23 21 29 29 H 1.09009 * 109.47116 * 174.37305 * 1 2 3 30 30 H 1.09007 * 109.47319 * 294.37011 * 1 2 3 31 31 H 1.08996 * 109.47488 * 54.37480 * 1 2 3 32 32 H 1.08998 * 109.49495 * 294.44778 * 4 2 1 33 33 H 1.08995 * 109.49470 * 54.53806 * 4 2 1 34 34 H 0.97004 * 119.99636 * 25.06224 * 7 5 4 35 35 H 1.09005 * 109.46718 * 85.58043 * 11 10 8 36 36 H 1.08992 * 109.47067 * 205.58012 * 11 10 8 37 37 H 1.08994 * 109.46960 * 325.58700 * 11 10 8 38 38 H 1.09001 * 117.50038 * 359.97438 * 12 10 8 39 39 H 1.08997 * 117.49884 * 145.02390 * 12 10 8 40 40 H 1.09001 * 117.49788 * 214.97776 * 13 10 8 41 41 H 1.09000 * 117.50159 * 0.02562 * 13 10 8 42 42 H 1.08995 * 109.49603 * 301.41232 * 14 5 4 43 43 H 1.08999 * 109.52058 * 181.33371 * 14 5 4 44 44 H 1.09001 * 109.58716 * 185.57655 * 15 14 5 45 45 H 1.08993 * 109.70812 * 65.22082 * 15 14 5 46 46 H 1.08995 * 109.47667 * 299.99990 * 19 17 16 47 47 H 1.09000 * 109.46712 * 60.01149 * 19 17 16 48 48 H 0.96999 * 119.99971 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0465 -0.7288 1.2445 5 6 3.5706 -0.8442 1.1675 6 1 4.0068 0.1521 1.0964 7 7 4.0711 -1.5114 2.3718 8 6 5.3350 -1.2943 2.7866 9 8 6.0580 -0.5469 2.1626 10 6 5.8496 -1.9803 4.0258 11 6 5.3104 -3.3910 4.2714 12 6 6.1312 -1.1080 5.2508 13 6 7.2929 -1.6932 4.4443 14 6 3.9602 -1.6607 -0.0670 15 6 3.4654 -0.9423 -1.3263 16 7 2.0225 -0.6980 -1.1953 17 6 1.1671 -1.1060 -2.1535 18 8 -0.0065 -0.8079 -2.0858 19 6 1.6691 -1.9326 -3.3094 20 16 0.2914 -2.3191 -4.4178 21 6 1.1382 -3.2636 -5.6407 22 1 2.1998 -3.4390 -5.5481 23 6 0.4410 -3.7821 -6.7231 24 7 -0.8528 -3.5679 -6.8362 25 14 1.3387 -4.7840 -8.0191 26 1 1.9542 -5.9769 -7.3840 27 1 0.3758 -5.2205 -9.0621 28 1 2.3995 -3.9516 -8.6412 29 1 -0.3634 -1.0228 -0.1008 30 1 -0.3634 0.4241 0.9361 31 1 -0.3634 0.5986 -0.8353 32 1 1.7688 -0.1672 2.1365 33 1 1.6079 -1.7256 1.2906 34 1 3.4928 -2.1095 2.8707 35 1 5.9171 -4.1123 3.7238 36 1 5.3524 -3.6155 5.3371 37 1 4.2776 -3.4500 3.9280 38 1 5.9447 -0.0379 5.1603 39 1 5.9323 -1.5390 6.2320 40 1 7.8579 -2.5091 4.8953 41 1 7.8701 -1.0079 3.8237 42 1 3.5037 -2.6487 -0.0086 43 1 5.0446 -1.7628 -0.1087 44 1 3.6524 -1.5664 -2.2002 45 1 3.9883 0.0075 -1.4370 46 1 2.4276 -1.3715 -3.8551 47 1 2.1031 -2.8586 -2.9323 48 1 -1.3400 -3.9300 -7.5928 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075022123.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:23 Heat of formation + Delta-G solvation = -63.137123 kcal Electronic energy + Delta-G solvation = -27539.600850 eV Core-core repulsion = 23720.820537 eV Total energy + Delta-G solvation = -3818.780313 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.77152 -41.03232 -38.74529 -37.49065 -35.78305 -34.59011 -34.26404 -32.44266 -30.46602 -29.42364 -28.33608 -27.63127 -25.80694 -24.20635 -23.38923 -23.23841 -21.96258 -20.82529 -20.14945 -19.41404 -18.03854 -17.78910 -17.26325 -17.23389 -16.88233 -16.68957 -16.11813 -15.84990 -15.75840 -15.21988 -15.11637 -14.89949 -14.59153 -14.49662 -14.37456 -13.95731 -13.59820 -13.48016 -13.45881 -13.28779 -13.20141 -13.09179 -12.91786 -12.87464 -12.74507 -12.61294 -12.39063 -12.11068 -12.05727 -11.75913 -11.72947 -11.51195 -11.13469 -10.97202 -10.82243 -10.28070 -10.13679 -10.12351 -9.65638 -8.66247 -8.34976 -6.12539 1.25302 1.42776 1.44638 1.46111 1.54587 1.59057 2.03981 2.09567 2.27328 2.84896 2.98898 3.24114 3.50207 3.64377 3.70884 3.73768 3.75758 3.90579 3.94655 3.99525 4.03397 4.19803 4.25048 4.33250 4.36425 4.45948 4.50394 4.63639 4.70971 4.77910 4.79222 4.82482 4.85640 4.87498 4.91258 4.96320 4.98246 5.07569 5.22009 5.24898 5.28672 5.38496 5.40923 5.43765 5.70889 6.18920 6.29873 6.51121 7.06249 7.19735 7.20682 8.73830 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016916 B = 0.002308 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.799350 B =12128.145061 C =13206.358497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.147 3.853 3 H 0.086 0.914 4 C -0.124 4.124 5 C 0.151 3.849 6 H 0.080 0.920 7 N -0.709 5.709 8 C 0.545 3.455 9 O -0.582 6.582 10 C -0.176 4.176 11 C -0.111 4.111 12 C -0.137 4.137 13 C -0.152 4.152 14 C -0.136 4.136 15 C 0.107 3.893 16 N -0.606 5.606 17 C 0.535 3.465 18 O -0.545 6.545 19 C -0.128 4.128 20 S -0.145 6.145 21 C -0.547 4.547 22 H 0.080 0.920 23 C 0.014 3.986 24 N -0.910 5.910 25 Si 0.996 3.004 26 H -0.262 1.262 27 H -0.278 1.278 28 H -0.263 1.263 29 H 0.042 0.958 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.104 0.896 33 H 0.076 0.924 34 H 0.413 0.587 35 H 0.063 0.937 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.088 0.912 39 H 0.130 0.870 40 H 0.122 0.878 41 H 0.085 0.915 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.092 0.908 45 H 0.085 0.915 46 H 0.101 0.899 47 H 0.102 0.898 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.726 2.806 27.197 31.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.044 3.956 3 H 0.103 0.897 4 C -0.163 4.163 5 C 0.046 3.954 6 H 0.098 0.902 7 N -0.360 5.360 8 C 0.333 3.667 9 O -0.462 6.462 10 C -0.180 4.180 11 C -0.169 4.169 12 C -0.174 4.174 13 C -0.190 4.190 14 C -0.175 4.175 15 C -0.016 4.016 16 N -0.341 5.341 17 C 0.323 3.677 18 O -0.422 6.422 19 C -0.280 4.280 20 S 0.082 5.918 21 C -0.695 4.695 22 H 0.098 0.902 23 C -0.191 4.191 24 N -0.546 5.546 25 Si 0.818 3.182 26 H -0.187 1.187 27 H -0.203 1.203 28 H -0.188 1.188 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.123 0.877 33 H 0.094 0.906 34 H 0.251 0.749 35 H 0.082 0.918 36 H 0.105 0.895 37 H 0.089 0.911 38 H 0.107 0.893 39 H 0.148 0.852 40 H 0.140 0.860 41 H 0.103 0.897 42 H 0.090 0.910 43 H 0.095 0.905 44 H 0.110 0.890 45 H 0.103 0.897 46 H 0.120 0.880 47 H 0.120 0.880 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 13.329 3.757 26.773 30.143 hybrid contribution 1.271 -1.068 -1.174 2.034 sum 14.600 2.688 25.599 29.592 Atomic orbital electron populations 1.22022 0.93194 1.02259 1.01272 1.21319 0.95295 0.95826 0.83129 0.89658 1.22197 0.93256 1.02595 0.98259 1.20839 0.93986 0.96613 0.83927 0.90213 1.45936 1.13376 1.48655 1.28082 1.20019 0.81468 0.80203 0.84984 1.90685 1.57695 1.39473 1.58329 1.21577 1.02328 0.99158 0.94890 1.21386 1.01090 0.90682 1.03694 1.23199 1.00905 0.98752 0.94568 1.23080 0.89615 1.03883 1.02398 1.22222 1.01670 0.99729 0.93889 1.21857 0.78842 1.01730 0.99129 1.48166 1.07535 1.58226 1.20208 1.19998 0.85734 0.79178 0.82831 1.90749 1.18426 1.56557 1.76493 1.23448 1.03574 1.02645 0.98285 1.85479 1.13023 1.68886 1.24362 1.23156 0.97440 1.38522 1.10411 0.90179 1.26101 0.95786 0.97183 0.99981 1.70168 1.08823 1.44483 1.31154 0.85038 0.77912 0.78366 0.76900 1.18678 1.20307 1.18766 0.93872 0.91039 0.92875 0.87740 0.90572 0.74878 0.91799 0.89535 0.91106 0.89335 0.85168 0.85972 0.89690 0.90985 0.90534 0.89018 0.89713 0.88030 0.87962 0.91984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.43 7.62 71.98 0.55 -2.88 16 2 C 0.15 3.21 3.48 44.97 0.16 3.36 16 3 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 4 C -0.12 -1.90 4.85 30.67 0.15 -1.76 16 5 C 0.15 2.49 2.42 45.02 0.11 2.60 16 6 H 0.08 1.56 7.58 -2.39 -0.02 1.54 16 7 N -0.71 -9.92 4.97 -442.40 -2.20 -12.12 16 8 C 0.55 9.99 7.36 87.66 0.64 10.64 16 9 O -0.58 -15.62 15.92 -3.02 -0.05 -15.67 16 10 C -0.18 -2.15 2.61 -52.93 -0.14 -2.29 16 11 C -0.11 -0.78 9.79 71.98 0.70 -0.08 16 12 C -0.14 -1.30 9.88 30.61 0.30 -1.00 16 13 C -0.15 -1.85 9.77 30.61 0.30 -1.55 16 14 C -0.14 -2.51 5.65 30.67 0.17 -2.34 16 15 C 0.11 2.28 6.35 86.36 0.55 2.83 16 16 N -0.61 -16.13 2.97 -795.04 -2.36 -18.50 16 17 C 0.54 19.74 7.52 87.66 0.66 20.40 16 18 O -0.54 -23.95 11.43 -3.03 -0.03 -23.99 16 19 C -0.13 -5.17 4.51 71.24 0.32 -4.85 16 20 S -0.14 -8.03 20.57 -56.49 -1.16 -9.19 16 21 C -0.55 -31.38 9.50 67.96 0.65 -30.74 16 22 H 0.08 4.28 7.80 -2.91 -0.02 4.26 16 23 C 0.01 0.82 5.49 84.86 0.47 1.29 16 24 N -0.91 -55.91 13.22 21.65 0.29 -55.62 16 25 Si 1.00 43.73 29.55 68.60 2.03 45.76 16 26 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 27 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 28 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 29 H 0.04 1.35 6.94 -2.38 -0.02 1.34 16 30 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 31 H 0.05 1.74 6.56 -2.39 -0.02 1.72 16 32 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.08 1.21 8.14 -2.39 -0.02 1.20 16 34 H 0.41 3.68 6.90 -92.71 -0.64 3.04 16 35 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 36 H 0.09 0.32 7.90 -2.39 -0.02 0.30 16 37 H 0.07 0.37 6.38 -2.39 -0.02 0.36 16 38 H 0.09 1.03 8.14 -2.39 -0.02 1.02 16 39 H 0.13 0.57 8.05 -2.39 -0.02 0.55 16 40 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.08 1.44 7.67 -2.39 -0.02 1.42 16 42 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.09 2.01 5.93 -2.39 -0.01 1.99 16 45 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.10 3.78 7.71 -2.40 -0.02 3.77 16 47 H 0.10 3.79 7.93 -2.39 -0.02 3.77 16 48 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -78.73 393.83 2.41 -76.31 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: 0.32 Total: 19.37 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: 5.59 Total: -6.36 kcal Atomic # 7 Polarization: -81.96 SS G_CDS: -4.28 Total: -86.24 kcal Atomic # 8 Polarization: -39.57 SS G_CDS: -0.08 Total: -39.66 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: -8.03 SS G_CDS: -1.16 Total: -9.19 kcal Total: -78.73 2.41 -76.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075022123.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.176 kcal (2) G-P(sol) polarization free energy of solvation -78.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds