Wall clock time and date at job start Sat Apr 11 2020 06:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 O 1.42892 * 109.47417 * 27.80164 * 3 2 1 5 5 C 1.35720 * 116.99966 * 180.02562 * 4 3 2 6 6 C 1.38996 * 119.91062 * 180.02562 * 5 4 3 7 7 C 1.37705 * 120.08963 * 179.97438 * 6 5 4 8 8 C 1.39735 * 119.90801 * 0.02687 * 7 6 5 9 9 C 1.47597 * 120.08781 * 179.97438 * 8 7 6 10 10 O 1.21594 * 119.99674 * 4.94739 * 9 8 7 11 11 N 1.34774 * 120.00409 * 184.94840 * 9 8 7 12 12 C 1.47395 * 125.59408 * 174.28782 * 11 9 8 13 13 C 1.54853 * 104.81266 * 204.60472 * 12 11 9 14 14 C 1.55117 * 101.77547 * 322.81037 * 13 12 11 15 15 H 1.08998 * 114.15657 * 158.73342 * 14 13 12 16 16 C 1.54234 * 108.08714 * 286.25410 * 14 13 12 17 17 N 1.46695 * 106.73267 * 136.07735 * 16 14 13 18 18 C 1.36938 * 125.32690 * 161.69523 * 17 16 14 19 19 H 1.07998 * 119.99477 * 4.71138 * 18 17 16 20 20 C 1.38806 * 120.00383 * 184.71691 * 18 17 16 21 21 N 1.31624 * 119.99726 * 354.98422 * 20 18 17 22 22 Si 1.86797 * 120.00263 * 174.98150 * 20 18 17 23 23 H 1.48500 * 109.47161 * 275.00189 * 22 20 18 24 24 H 1.48497 * 109.47009 * 35.00024 * 22 20 18 25 25 H 1.48501 * 109.47270 * 155.00259 * 22 20 18 26 26 C 1.46642 * 109.35444 * 341.42392 * 17 16 14 27 27 C 1.46740 * 125.58751 * 354.28363 * 11 9 8 28 28 H 1.08998 * 111.83644 * 55.81537 * 27 11 9 29 29 C 1.39735 * 119.82442 * 0.27183 * 8 7 6 30 30 C 1.37705 * 119.90923 * 359.42275 * 29 8 7 31 31 H 4.38442 * 5.44455 * 180.02562 * 4 1 2 32 32 H 1.09006 * 109.46933 * 267.80040 * 3 2 1 33 33 H 1.09005 * 109.47116 * 147.80832 * 3 2 1 34 34 H 1.07999 * 119.95812 * 0.02562 * 6 5 4 35 35 H 1.07991 * 120.04441 * 180.02562 * 7 6 5 36 36 H 1.09001 * 110.37289 * 85.76790 * 12 11 9 37 37 H 1.09001 * 110.46372 * 323.48825 * 12 11 9 38 38 H 1.09003 * 110.96857 * 204.68523 * 13 12 11 39 39 H 1.09006 * 110.99741 * 80.94515 * 13 12 11 40 40 H 1.09001 * 110.14467 * 16.70156 * 16 14 13 41 41 H 1.09006 * 109.92886 * 255.32817 * 16 14 13 42 42 H 0.97001 * 119.99852 * 179.97438 * 21 20 18 43 43 H 1.09001 * 109.75362 * 121.19001 * 26 17 16 44 44 H 1.08996 * 109.75931 * 241.88523 * 26 17 16 45 45 H 1.08000 * 120.04245 * 179.72407 * 29 8 7 46 46 H 1.07999 * 119.95524 * 180.29562 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1229 -1.1908 -0.6283 5 6 4.4684 -1.3477 -0.7108 6 6 4.9983 -2.4841 -1.3107 7 6 6.3630 -2.6468 -1.3967 8 6 7.2154 -1.6677 -0.8795 9 6 8.6787 -1.8383 -0.9691 10 8 9.1445 -2.7860 -1.5721 11 7 9.4987 -0.9438 -0.3827 12 6 10.9656 -1.0552 -0.2923 13 6 11.3520 -0.2039 0.9422 14 6 10.3547 0.9793 0.8355 15 1 10.1903 1.5100 1.7732 16 6 10.8158 1.8917 -0.3193 17 7 9.6150 2.2433 -1.0851 18 6 9.5117 3.2937 -1.9576 19 1 10.3797 3.8953 -2.1836 20 6 8.2915 3.5853 -2.5515 21 7 7.2578 2.7947 -2.3538 22 14 8.1162 5.0996 -3.6311 23 1 7.8240 6.2820 -2.7815 24 1 9.3809 5.3256 -4.3758 25 1 7.0044 4.8950 -4.5940 26 6 8.5445 1.2903 -0.7750 27 6 9.0773 0.3008 0.2706 28 1 8.3431 0.1184 1.0552 29 6 6.6787 -0.5297 -0.2716 30 6 5.3129 -0.3716 -0.1951 31 1 -1.0498 -0.0003 -0.0003 32 1 3.0093 0.0403 1.0270 33 1 3.0089 0.8705 -0.5475 34 1 4.3388 -3.2401 -1.7105 35 1 6.7739 -3.5298 -1.8633 36 1 11.4328 -0.6535 -1.1915 37 1 11.2605 -2.0941 -0.1443 38 1 12.3817 0.1459 0.8679 39 1 11.1975 -0.7623 1.8655 40 1 11.5227 1.3613 -0.9575 41 1 11.2792 2.7931 0.0817 42 1 6.4050 2.9986 -2.7685 43 1 7.6825 1.8226 -0.3729 44 1 8.2568 0.7526 -1.6784 45 1 7.3343 0.2270 0.1333 46 1 4.8974 0.5100 0.2703 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076334105.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:30 Heat of formation + Delta-G solvation = 88.241759 kcal Electronic energy + Delta-G solvation = -30120.202320 eV Core-core repulsion = 26172.542336 eV Total energy + Delta-G solvation = -3947.659984 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.83805 -39.81345 -38.09256 -36.92744 -34.69547 -33.64458 -32.63870 -31.68810 -30.56819 -29.75093 -28.90222 -27.56378 -26.61597 -24.79900 -23.59817 -22.63450 -21.67579 -20.93042 -19.93842 -19.10530 -18.55636 -18.10092 -17.31200 -16.79714 -16.08286 -16.00555 -15.52355 -15.24939 -14.85380 -14.41275 -14.25694 -13.97299 -13.67425 -13.40591 -13.23154 -13.09971 -12.94046 -12.74128 -12.56650 -12.28356 -12.07756 -11.89766 -11.61760 -11.29564 -11.16652 -11.11023 -10.96740 -10.79234 -10.61501 -10.55121 -10.31129 -10.27024 -10.07888 -9.88326 -9.76440 -9.46210 -8.77547 -8.68068 -8.29931 -7.98914 -6.91428 -5.79760 -3.13130 1.20103 1.61877 2.13711 2.55683 3.19249 3.35485 3.36259 3.41758 3.43218 3.50241 4.15878 4.21534 4.42838 4.66981 4.69019 4.89807 5.05350 5.09314 5.13159 5.14473 5.18365 5.34487 5.41089 5.51770 5.53289 5.62139 5.62856 5.68237 5.77457 5.81073 5.87734 5.98852 6.06852 6.21466 6.22863 6.28090 6.33322 6.50952 6.57327 6.58403 6.69414 6.78848 6.86536 7.24172 7.29001 7.41054 7.41780 7.68266 7.93981 8.16897 8.56276 9.13566 9.74507 10.37261 11.31552 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008092 B = 0.004649 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3459.500673 B = 6021.513397 C = 8448.492678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.192 4.192 3 C 0.168 3.832 4 O -0.311 6.311 5 C 0.149 3.851 6 C -0.167 4.167 7 C -0.024 4.024 8 C -0.168 4.168 9 C 0.583 3.417 10 O -0.555 6.555 11 N -0.598 5.598 12 C 0.110 3.890 13 C -0.124 4.124 14 C -0.110 4.110 15 H 0.101 0.899 16 C 0.140 3.860 17 N -0.600 5.600 18 C -0.232 4.232 19 H 0.079 0.921 20 C -0.003 4.003 21 N -0.919 5.919 22 Si 0.911 3.089 23 H -0.288 1.288 24 H -0.282 1.282 25 H -0.291 1.291 26 C 0.165 3.835 27 C 0.086 3.914 28 H 0.093 0.907 29 C -0.064 4.064 30 C -0.208 4.208 31 H 0.224 0.776 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.132 0.868 35 H 0.138 0.862 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.021 0.979 41 H 0.038 0.962 42 H 0.253 0.747 43 H 0.063 0.937 44 H 0.054 0.946 45 H 0.180 0.820 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.560 -6.685 9.998 12.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.192 4.192 3 C 0.094 3.906 4 O -0.225 6.225 5 C 0.104 3.896 6 C -0.186 4.186 7 C -0.043 4.043 8 C -0.171 4.171 9 C 0.374 3.626 10 O -0.435 6.435 11 N -0.330 5.330 12 C -0.012 4.012 13 C -0.163 4.163 14 C -0.130 4.130 15 H 0.119 0.881 16 C 0.014 3.986 17 N -0.326 5.326 18 C -0.360 4.360 19 H 0.097 0.903 20 C -0.200 4.200 21 N -0.566 5.566 22 Si 0.741 3.259 23 H -0.215 1.215 24 H -0.208 1.208 25 H -0.217 1.217 26 C 0.039 3.961 27 C -0.018 4.018 28 H 0.110 0.890 29 C -0.081 4.081 30 C -0.227 4.227 31 H 0.240 0.760 32 H 0.107 0.893 33 H 0.113 0.887 34 H 0.150 0.850 35 H 0.156 0.844 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.090 0.910 40 H 0.039 0.961 41 H 0.056 0.944 42 H 0.064 0.936 43 H 0.081 0.919 44 H 0.072 0.928 45 H 0.196 0.804 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.667 -7.260 9.424 12.779 hybrid contribution -0.404 1.146 -0.691 1.398 sum -5.071 -6.114 8.733 11.806 Atomic orbital electron populations 1.24959 0.95814 0.97783 0.99919 1.22348 0.93587 1.02156 1.01156 1.19350 0.84736 0.87727 0.98785 1.86014 1.19888 1.41128 1.75451 1.19232 0.81307 0.94527 0.94565 1.20232 0.94829 0.97829 1.05677 1.20967 0.91450 0.97777 0.94066 1.19722 0.92668 0.97881 1.06857 1.17777 0.85954 0.81037 0.77807 1.90717 1.77548 1.32396 1.42879 1.48175 1.07156 1.21501 1.56191 1.22180 0.80480 1.00181 0.98368 1.22774 0.99691 0.96225 0.97578 1.23209 0.94026 0.96048 0.99674 0.88079 1.21401 0.90974 0.95591 0.90643 1.44166 1.07880 1.31467 1.49125 1.19015 0.95000 1.04097 1.17843 0.90342 1.24783 0.95824 0.98868 1.00502 1.69905 1.01370 1.37314 1.47976 0.86154 0.77320 0.82594 0.79792 1.21497 1.20773 1.21712 1.21712 0.91043 0.88705 0.94593 1.23115 0.97147 0.84964 0.96537 0.88995 1.23045 0.95896 0.96311 0.92842 1.21194 0.94297 0.99947 1.07244 0.75961 0.89295 0.88741 0.84997 0.84435 0.91184 0.90857 0.89807 0.90991 0.96092 0.94378 0.93648 0.91909 0.92829 0.80375 0.84951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.63 19.25 29.55 0.57 -1.06 16 2 C -0.19 -2.28 13.73 -37.12 -0.51 -2.79 16 3 C 0.17 2.00 5.21 34.37 0.18 2.18 16 4 O -0.31 -4.48 10.08 -18.87 -0.19 -4.67 16 5 C 0.15 2.27 6.70 -39.02 -0.26 2.01 16 6 C -0.17 -2.50 9.97 -39.50 -0.39 -2.89 16 7 C -0.02 -0.39 9.58 -39.22 -0.38 -0.76 16 8 C -0.17 -3.04 5.69 -104.96 -0.60 -3.64 16 9 C 0.58 11.48 7.37 -12.44 -0.09 11.39 16 10 O -0.56 -12.11 16.64 5.28 0.09 -12.02 16 11 N -0.60 -10.74 2.98 -169.55 -0.51 -11.25 16 12 C 0.11 1.72 6.41 -2.58 -0.02 1.70 16 13 C -0.12 -1.55 6.35 -24.63 -0.16 -1.71 16 14 C -0.11 -1.66 4.35 -87.65 -0.38 -2.04 16 15 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 16 C 0.14 2.66 6.44 -3.29 -0.02 2.64 16 17 N -0.60 -14.36 3.38 -171.89 -0.58 -14.94 16 18 C -0.23 -6.17 10.24 -15.06 -0.15 -6.33 16 19 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 20 C 0.00 -0.09 5.48 -17.43 -0.10 -0.18 16 21 N -0.92 -25.42 10.27 55.49 0.57 -24.85 16 22 Si 0.91 21.54 29.56 -169.99 -5.02 16.51 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 C 0.16 3.65 3.13 -3.70 -0.01 3.63 16 27 C 0.09 1.49 2.70 -66.33 -0.18 1.31 16 28 H 0.09 1.40 6.15 -51.93 -0.32 1.08 16 29 C -0.06 -1.09 7.22 -39.22 -0.28 -1.38 16 30 C -0.21 -3.23 9.01 -39.50 -0.36 -3.59 16 31 H 0.22 1.23 7.80 -54.10 -0.42 0.81 16 32 H 0.09 0.87 7.65 -51.93 -0.40 0.48 16 33 H 0.09 1.10 7.65 -51.93 -0.40 0.70 16 34 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 35 H 0.14 2.11 7.65 -52.49 -0.40 1.71 16 36 H 0.07 1.19 7.16 -51.93 -0.37 0.82 16 37 H 0.07 1.08 8.09 -51.93 -0.42 0.66 16 38 H 0.08 0.90 8.08 -51.93 -0.42 0.48 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.02 0.41 6.51 -51.93 -0.34 0.07 16 41 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 43 H 0.06 1.49 6.42 -51.93 -0.33 1.16 16 44 H 0.05 1.40 6.29 -51.93 -0.33 1.07 16 45 H 0.18 3.11 1.49 -60.49 -0.09 3.02 16 46 H 0.13 1.78 6.28 -52.49 -0.33 1.45 16 LS Contribution 368.90 15.07 5.56 5.56 Total: -1.00 -32.76 368.90 -9.02 -41.78 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -5.80 Total: 5.38 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: -3.14 Total: -1.51 kcal Atomic # 7 Polarization: -50.52 SS G_CDS: -0.52 Total: -51.04 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.10 Total: -16.69 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.76 -9.02 -41.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076334105.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.024 kcal (2) G-P(sol) polarization free energy of solvation -32.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds