Wall clock time and date at job start Sat Apr 11 2020 06:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09009 * 115.55571 * 2 1 4 4 C 1.52992 * 117.50370 * 214.31233 * 2 1 3 5 5 C 1.52994 * 60.00092 * 252.50941 * 4 2 1 6 6 H 1.09002 * 117.50570 * 107.51114 * 5 4 2 7 7 C 1.50707 * 117.50004 * 252.51072 * 5 4 2 8 8 O 1.21284 * 119.99738 * 68.60444 * 7 5 4 9 9 N 1.34767 * 120.00041 * 248.60752 * 7 5 4 10 10 C 1.46501 * 120.00049 * 180.27379 * 9 7 5 11 11 C 1.53004 * 109.47138 * 174.72414 * 10 9 7 12 12 H 1.09005 * 109.58503 * 60.08638 * 11 10 9 13 13 C 1.53188 * 109.58624 * 299.80723 * 11 10 9 14 14 C 1.53041 * 109.31092 * 185.58025 * 13 11 10 15 15 C 1.53041 * 109.54028 * 61.36097 * 14 13 11 16 16 C 1.53189 * 109.31168 * 298.63513 * 15 14 13 17 17 N 1.46924 * 108.77834 * 54.63669 * 16 15 14 18 18 C 1.34776 * 120.63239 * 126.38899 * 17 16 15 19 19 O 1.21289 * 119.99614 * 185.44107 * 18 17 16 20 20 C 1.50689 * 119.99848 * 5.43721 * 18 17 16 21 21 S 1.81006 * 109.47008 * 180.02562 * 20 18 17 22 22 C 1.76198 * 100.00023 * 180.02562 * 21 20 18 23 23 H 1.08002 * 120.00267 * 359.97438 * 22 21 20 24 24 C 1.38796 * 119.99821 * 180.02562 * 22 21 20 25 25 N 1.31631 * 120.00092 * 180.02562 * 24 22 21 26 26 Si 1.86795 * 120.00324 * 359.97438 * 24 22 21 27 27 H 1.48501 * 109.47406 * 89.99997 * 26 24 22 28 28 H 1.48499 * 109.47755 * 210.00293 * 26 24 22 29 29 H 1.48506 * 109.47023 * 330.00511 * 26 24 22 30 30 H 1.08994 * 109.47453 * 274.30968 * 1 2 3 31 31 H 1.08997 * 109.47323 * 34.31589 * 1 2 3 32 32 H 1.09001 * 109.46679 * 154.30772 * 1 2 3 33 33 H 1.09002 * 117.50001 * 145.02089 * 4 2 1 34 34 H 1.09004 * 117.51944 * 359.97438 * 4 2 1 35 35 H 0.97006 * 120.00242 * 359.97438 * 9 7 5 36 36 H 1.09004 * 109.47079 * 294.72065 * 10 9 7 37 37 H 1.08993 * 109.47325 * 54.72594 * 10 9 7 38 38 H 1.08999 * 109.49750 * 305.52459 * 13 11 10 39 39 H 1.08997 * 109.50189 * 65.62622 * 13 11 10 40 40 H 1.09003 * 109.46239 * 181.38288 * 14 13 11 41 41 H 1.09003 * 109.46250 * 301.34128 * 14 13 11 42 42 H 1.08995 * 109.49845 * 58.58997 * 15 14 13 43 43 H 1.09004 * 109.49409 * 178.65334 * 15 14 13 44 44 H 1.09002 * 109.58403 * 174.42178 * 16 15 14 45 45 H 1.09004 * 109.58603 * 294.84591 * 16 15 14 46 46 H 1.08996 * 109.47790 * 300.00087 * 20 18 17 47 47 H 1.09002 * 109.47384 * 60.00485 * 20 18 17 48 48 H 0.97005 * 120.00696 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2365 -1.1209 -0.7650 5 6 2.2365 -1.1209 0.7650 6 1 1.6116 -1.8587 1.2684 7 6 3.5293 -0.7809 1.4609 8 8 3.9719 0.3467 1.4011 9 7 4.1936 -1.7299 2.1497 10 6 5.4473 -1.3979 2.8312 11 6 5.9237 -2.6064 3.6397 12 1 6.0890 -3.4512 2.9711 13 6 4.8644 -2.9765 4.6826 14 6 5.4044 -4.0941 5.5778 15 6 6.6542 -3.6032 6.3120 16 6 7.7337 -3.2402 5.2875 17 7 7.1747 -2.2721 4.3342 18 6 7.7974 -1.0998 4.1011 19 8 7.2768 -0.2679 3.3883 20 6 9.1402 -0.8226 4.7262 21 16 9.7100 0.8215 4.2277 22 6 11.2536 0.8804 5.0753 23 1 11.5720 0.0414 5.6763 24 6 12.0598 2.0054 4.9714 25 7 13.2132 2.0492 5.6041 26 14 11.5088 3.4567 3.9325 27 1 10.7280 4.3994 4.7734 28 1 12.6999 4.1533 3.3836 29 1 10.6602 2.9714 2.8146 30 1 -0.3634 0.0772 1.0247 31 1 -0.3634 0.8488 -0.5793 32 1 -0.3633 -0.9261 -0.4455 33 1 3.1717 -0.8750 -1.2682 34 1 1.6117 -1.8588 -1.2681 35 1 3.8395 -2.6317 2.1978 36 1 6.2038 -1.1342 2.0921 37 1 5.2841 -0.5540 3.5013 38 1 4.6325 -2.1027 5.2915 39 1 3.9610 -3.3190 4.1779 40 1 4.6433 -4.3764 6.3053 41 1 5.6593 -4.9590 4.9652 42 1 6.4055 -2.7235 6.9056 43 1 7.0243 -4.3916 6.9674 44 1 8.5886 -2.7976 5.7988 45 1 8.0485 -4.1377 4.7548 46 1 9.0508 -0.8620 5.8118 47 1 9.8577 -1.5726 4.3933 48 1 13.7766 2.8356 5.5319 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081897789.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:38 Heat of formation + Delta-G solvation = -44.502668 kcal Electronic energy + Delta-G solvation = -27536.821654 eV Core-core repulsion = 23718.849392 eV Total energy + Delta-G solvation = -3817.972263 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -40.70494 -39.80847 -37.42521 -36.99548 -35.02316 -33.03938 -32.42873 -31.81106 -29.21472 -29.12132 -26.98745 -25.60500 -24.81716 -23.91521 -22.08199 -21.22537 -21.06070 -20.21603 -19.08884 -17.82638 -17.43660 -16.80774 -16.22974 -15.72680 -15.35803 -15.18286 -14.95039 -14.78789 -14.45121 -14.34212 -14.24733 -13.94642 -13.57109 -13.49881 -13.42453 -13.14301 -13.00840 -12.77266 -12.52189 -12.29977 -12.20479 -11.94245 -11.68459 -11.38651 -11.24805 -11.23992 -10.99707 -10.98814 -10.86215 -10.62446 -10.58731 -10.34816 -9.87462 -9.82922 -9.13564 -9.00215 -8.98401 -8.54030 -8.47305 -6.90858 -6.28207 -3.99867 2.47265 2.57535 2.85721 2.96889 3.30378 3.35809 3.53706 3.58009 3.62229 4.32455 4.35670 4.42869 4.48913 4.49181 4.53147 4.56433 4.70331 4.77353 4.90609 4.94857 4.98781 5.02508 5.10991 5.13689 5.25905 5.32585 5.37390 5.40010 5.43912 5.46678 5.53648 5.66530 5.67555 5.70652 5.74691 5.75833 5.78130 5.96918 5.98655 6.04115 6.12118 6.18116 6.38744 6.60435 7.37279 7.47519 7.94671 8.24825 8.39680 8.41588 9.18227 10.80869 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010563 B = 0.002989 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2650.065244 B = 9364.748798 C =11735.257906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.124 4.124 3 H 0.118 0.882 4 C -0.150 4.150 5 C -0.191 4.191 6 H 0.120 0.880 7 C 0.538 3.462 8 O -0.529 6.529 9 N -0.733 5.733 10 C 0.126 3.874 11 C 0.139 3.861 12 H 0.074 0.926 13 C -0.133 4.133 14 C -0.118 4.118 15 C -0.137 4.137 16 C 0.108 3.892 17 N -0.613 5.613 18 C 0.529 3.471 19 O -0.503 6.503 20 C -0.122 4.122 21 S -0.140 6.140 22 C -0.521 4.521 23 H 0.088 0.912 24 C 0.096 3.904 25 N -0.880 5.880 26 Si 0.856 3.144 27 H -0.267 1.267 28 H -0.274 1.274 29 H -0.235 1.235 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.391 0.609 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.076 0.924 44 H 0.093 0.907 45 H 0.069 0.931 46 H 0.096 0.904 47 H 0.097 0.903 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.576 -16.854 -5.146 29.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.142 4.142 3 H 0.136 0.864 4 C -0.188 4.188 5 C -0.212 4.212 6 H 0.138 0.862 7 C 0.323 3.677 8 O -0.405 6.405 9 N -0.387 5.387 10 C 0.004 3.996 11 C 0.035 3.965 12 H 0.092 0.908 13 C -0.171 4.171 14 C -0.156 4.156 15 C -0.176 4.176 16 C -0.015 4.015 17 N -0.350 5.350 18 C 0.318 3.682 19 O -0.377 6.377 20 C -0.272 4.272 21 S 0.087 5.913 22 C -0.669 4.669 23 H 0.106 0.894 24 C -0.113 4.113 25 N -0.517 5.517 26 Si 0.680 3.320 27 H -0.192 1.192 28 H -0.199 1.199 29 H -0.159 1.159 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.225 0.775 36 H 0.112 0.888 37 H 0.106 0.894 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.095 0.905 44 H 0.111 0.889 45 H 0.087 0.913 46 H 0.114 0.886 47 H 0.115 0.885 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -23.789 -14.671 -6.180 28.624 hybrid contribution 0.586 -0.970 0.809 1.392 sum -23.203 -15.641 -5.371 28.493 Atomic orbital electron populations 1.21396 0.92289 1.02137 1.02165 1.22385 0.95130 0.95295 1.01420 0.86394 1.23098 1.03216 1.01546 0.90897 1.22324 0.97933 1.05224 0.95729 0.86162 1.19579 0.84564 0.84859 0.78652 1.90769 1.68176 1.20917 1.60599 1.46267 1.25786 1.12936 1.53668 1.22253 0.84494 0.95687 0.97121 1.21373 0.84321 0.97513 0.93262 0.90794 1.22031 0.97626 0.99604 0.97834 1.21504 0.97518 0.97802 0.98733 1.21939 0.95728 1.01946 0.97938 1.21774 0.96719 0.92625 0.90360 1.48075 1.24152 1.18619 1.44158 1.20419 0.86477 0.80572 0.80780 1.90777 1.65051 1.44785 1.37097 1.23333 0.95711 1.04454 1.03726 1.84883 1.24577 1.15185 1.66697 1.22305 1.02813 1.07155 1.34608 0.89417 1.24703 0.93892 0.97951 0.94717 1.69936 1.10525 1.29952 1.41289 0.86749 0.79515 0.83098 0.82594 1.19192 1.19946 1.15857 0.91974 0.91660 0.92447 0.88213 0.87900 0.77508 0.88846 0.89434 0.91043 0.91044 0.91598 0.91740 0.91176 0.90508 0.88872 0.91259 0.88588 0.88487 0.91948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.80 10.19 37.16 0.38 -0.42 16 2 C -0.12 -1.13 5.92 -90.63 -0.54 -1.66 16 3 H 0.12 1.35 7.67 -51.92 -0.40 0.95 16 4 C -0.15 -1.21 9.88 -26.74 -0.26 -1.47 16 5 C -0.19 -1.74 5.91 -91.77 -0.54 -2.28 16 6 H 0.12 0.78 8.14 -51.93 -0.42 0.35 16 7 C 0.54 7.13 7.61 -10.99 -0.08 7.05 16 8 O -0.53 -9.86 16.25 5.55 0.09 -9.77 16 9 N -0.73 -8.08 5.23 -60.29 -0.32 -8.40 16 10 C 0.13 1.78 3.52 -4.04 -0.01 1.77 16 11 C 0.14 1.51 3.05 -67.60 -0.21 1.30 16 12 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 13 C -0.13 -1.11 5.11 -26.61 -0.14 -1.24 16 14 C -0.12 -0.82 5.88 -26.69 -0.16 -0.97 16 15 C -0.14 -1.09 6.08 -26.61 -0.16 -1.25 16 16 C 0.11 1.05 6.33 -3.71 -0.02 1.03 16 17 N -0.61 -7.88 2.97 -165.22 -0.49 -8.37 16 18 C 0.53 9.33 7.63 -10.99 -0.08 9.24 16 19 O -0.50 -10.61 11.27 5.55 0.06 -10.55 16 20 C -0.12 -2.34 4.56 36.00 0.16 -2.18 16 21 S -0.14 -3.57 18.55 -107.50 -1.99 -5.57 16 22 C -0.52 -15.04 10.04 30.94 0.31 -14.73 16 23 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 24 C 0.10 2.83 5.50 -17.43 -0.10 2.73 16 25 N -0.88 -26.68 13.97 55.49 0.78 -25.90 16 26 Si 0.86 22.16 27.74 -169.99 -4.71 17.44 16 27 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 28 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 29 H -0.23 -6.11 6.74 56.52 0.38 -5.73 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.30 7.90 -51.93 -0.41 -0.11 16 33 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.10 0.59 8.05 -51.93 -0.42 0.17 16 35 H 0.39 2.83 7.55 -40.82 -0.31 2.52 16 36 H 0.09 1.66 6.49 -51.93 -0.34 1.32 16 37 H 0.09 1.55 6.99 -51.93 -0.36 1.19 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.45 7.16 -51.93 -0.37 0.08 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.09 0.95 5.96 -51.93 -0.31 0.65 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.10 1.72 7.46 -51.92 -0.39 1.33 16 47 H 0.10 1.74 8.12 -51.92 -0.42 1.32 16 48 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 393.40 15.07 5.93 5.93 Total: -1.00 -36.17 393.40 -10.06 -46.23 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -7.95 Total: 2.05 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: -1.45 Total: -3.09 kcal Atomic # 7 Polarization: -42.64 SS G_CDS: -0.03 Total: -42.67 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: 0.15 Total: -20.33 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.71 Total: 17.44 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.57 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.17 -10.06 -46.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081897789.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.729 kcal (2) G-P(sol) polarization free energy of solvation -36.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds