Wall clock time and date at job start Sat Apr 11 2020 06:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 115.54890 * 2 1 4 4 C 1.53071 * 117.51259 * 145.71370 * 2 1 3 5 5 C 1.52991 * 117.50216 * 214.32651 * 2 1 3 6 6 H 1.09000 * 117.49950 * 359.97438 * 5 2 1 7 7 C 1.50704 * 117.50039 * 144.99732 * 5 2 1 8 8 O 1.21273 * 119.99822 * 359.91405 * 7 5 2 9 9 N 1.34778 * 120.00001 * 179.91237 * 7 5 2 10 10 C 1.46929 * 120.62980 * 5.08022 * 9 7 5 11 11 C 1.53192 * 108.77704 * 126.41325 * 10 9 7 12 12 C 1.53039 * 109.31348 * 54.63067 * 11 10 9 13 13 C 1.53043 * 109.54000 * 298.63861 * 12 11 10 14 14 C 1.46924 * 120.63203 * 185.09869 * 9 7 5 15 15 H 1.09002 * 109.58753 * 113.65359 * 14 9 7 16 16 C 1.52999 * 109.58344 * 353.37736 * 14 9 7 17 17 N 1.46505 * 109.46900 * 179.25398 * 16 14 9 18 18 C 1.34780 * 119.99759 * 174.65746 * 17 16 14 19 19 O 1.21278 * 119.99884 * 359.97438 * 18 17 16 20 20 C 1.50705 * 119.99659 * 179.97438 * 18 17 16 21 21 S 1.81003 * 109.46893 * 179.97438 * 20 18 17 22 22 C 1.76202 * 99.99687 * 179.97438 * 21 20 18 23 23 H 1.07997 * 120.00229 * 0.02562 * 22 21 20 24 24 C 1.38800 * 119.99741 * 180.02562 * 22 21 20 25 25 N 1.31636 * 120.00245 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00052 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.46740 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.46893 * 119.99730 * 26 24 22 29 29 H 1.48495 * 109.47129 * 239.99892 * 26 24 22 30 30 H 1.08994 * 109.47173 * 205.67094 * 1 2 3 31 31 H 1.09004 * 109.47317 * 325.67771 * 1 2 3 32 32 H 1.09005 * 109.47198 * 85.67252 * 1 2 3 33 33 H 1.09000 * 117.49679 * 359.97438 * 4 2 1 34 34 H 1.09003 * 117.51912 * 214.95382 * 4 2 1 35 35 H 1.09008 * 109.58328 * 246.19885 * 10 9 7 36 36 H 1.09003 * 109.58757 * 6.61793 * 10 9 7 37 37 H 1.09002 * 109.49711 * 174.58560 * 11 10 9 38 38 H 1.09000 * 109.49432 * 294.64882 * 11 10 9 39 39 H 1.09003 * 109.45693 * 58.65712 * 12 11 10 40 40 H 1.08999 * 109.46243 * 178.62869 * 12 11 10 41 41 H 1.09000 * 109.49581 * 301.41345 * 13 12 11 42 42 H 1.09001 * 109.49690 * 181.31753 * 13 12 11 43 43 H 1.09003 * 109.46975 * 299.25020 * 16 14 9 44 44 H 1.09000 * 109.47728 * 59.25365 * 16 14 9 45 45 H 0.96998 * 119.99750 * 354.65607 * 17 16 14 46 46 H 1.08998 * 109.46702 * 299.99888 * 20 18 17 47 47 H 1.09003 * 109.47129 * 60.00207 * 20 18 17 48 48 H 0.96996 * 120.00040 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2371 -1.1217 0.7648 5 6 2.2365 -1.1207 -0.7652 6 1 1.6113 -1.8583 -1.2684 7 6 3.5290 -0.7805 -1.4614 8 8 3.9704 0.3476 -1.4031 9 7 4.1944 -1.7298 -2.1487 10 6 3.6188 -3.0705 -2.3221 11 6 3.6008 -3.4101 -3.8158 12 6 5.0117 -3.2530 -4.3876 13 6 5.4702 -1.8017 -4.2276 14 6 5.5094 -1.4440 -2.7386 15 1 6.2721 -2.0399 -2.2373 16 6 5.8318 0.0429 -2.5766 17 7 7.1510 0.3217 -3.1497 18 6 7.6014 1.5902 -3.2183 19 8 6.9145 2.5007 -2.8061 20 6 8.9586 1.8769 -3.8072 21 16 9.2730 3.6588 -3.7590 22 6 10.8774 3.7062 -4.4857 23 1 11.3542 2.7902 -4.8022 24 6 11.5285 4.9207 -4.6516 25 7 10.9473 6.0372 -4.2664 26 14 13.2292 4.9711 -5.4227 27 1 13.6571 3.5916 -5.7681 28 1 13.1898 5.7996 -6.6544 29 1 14.1923 5.5620 -4.4591 30 1 -0.3633 -0.9262 0.4452 31 1 -0.3634 0.8487 0.5795 32 1 -0.3634 0.0775 -1.0248 33 1 1.6120 -1.8593 1.2682 34 1 3.1724 -0.8764 1.2678 35 1 4.2271 -3.8011 -1.7885 36 1 2.6012 -3.0845 -1.9318 37 1 3.2658 -4.4385 -3.9510 38 1 2.9204 -2.7346 -4.3342 39 1 5.6959 -3.9111 -3.8519 40 1 5.0065 -3.5176 -5.4449 41 1 4.7725 -1.1410 -4.7423 42 1 6.4657 -1.6853 -4.6561 43 1 5.0781 0.6366 -3.0940 44 1 5.8337 0.3011 -1.5176 45 1 7.7001 -0.4065 -3.4796 46 1 9.7226 1.3570 -3.2292 47 1 8.9867 1.5313 -4.8406 48 1 11.4025 6.8858 -4.3819 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082222533.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:47 Heat of formation + Delta-G solvation = -41.635938 kcal Electronic energy + Delta-G solvation = -27375.983274 eV Core-core repulsion = 23558.135322 eV Total energy + Delta-G solvation = -3817.847952 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.08024 -38.98377 -38.22661 -36.84710 -34.70468 -33.22958 -32.37483 -31.69596 -29.24398 -29.11386 -26.81817 -25.45243 -24.85008 -24.35216 -22.18780 -21.33346 -20.68448 -20.29223 -19.09438 -17.92860 -17.45764 -16.52533 -16.03918 -15.77866 -15.71522 -15.14591 -14.86481 -14.76128 -14.63965 -14.29033 -14.23573 -13.95583 -13.68742 -13.53342 -13.32747 -13.05344 -13.00996 -12.68857 -12.50610 -12.45117 -12.20763 -11.77687 -11.70976 -11.40947 -11.35625 -11.14623 -11.03233 -10.97749 -10.94772 -10.70759 -10.67923 -10.35937 -9.74998 -9.56943 -9.12331 -9.03060 -9.00022 -8.54075 -8.14461 -6.42697 -6.16202 -3.85900 2.23285 2.47198 3.17673 3.24703 3.29598 3.32550 3.40029 3.47013 3.87561 4.08071 4.24950 4.25680 4.38187 4.39147 4.44532 4.48843 4.59062 4.68348 4.83629 4.89928 4.99089 5.05645 5.13318 5.18576 5.25162 5.28483 5.31423 5.34510 5.41020 5.44294 5.47740 5.59729 5.64236 5.66276 5.73240 5.74718 5.89643 5.97300 5.99537 6.05633 6.11302 6.22206 6.45178 6.78149 7.08699 7.64961 7.87960 7.96988 8.40812 8.81663 9.28870 10.91272 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016963 B = 0.002248 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.283479 B =12449.994758 C =13806.309614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.122 4.122 3 H 0.120 0.880 4 C -0.148 4.148 5 C -0.194 4.194 6 H 0.123 0.877 7 C 0.538 3.462 8 O -0.514 6.514 9 N -0.605 5.605 10 C 0.109 3.891 11 C -0.137 4.137 12 C -0.120 4.120 13 C -0.134 4.134 14 C 0.137 3.863 15 H 0.078 0.922 16 C 0.131 3.869 17 N -0.745 5.745 18 C 0.530 3.470 19 O -0.512 6.512 20 C -0.152 4.152 21 S -0.061 6.061 22 C -0.534 4.534 23 H 0.072 0.928 24 C 0.072 3.928 25 N -0.867 5.867 26 Si 0.919 3.081 27 H -0.272 1.272 28 H -0.280 1.280 29 H -0.280 1.280 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.088 0.912 45 H 0.390 0.610 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.885 -25.888 5.170 33.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.140 4.140 3 H 0.138 0.862 4 C -0.185 4.185 5 C -0.215 4.215 6 H 0.140 0.860 7 C 0.326 3.674 8 O -0.389 6.389 9 N -0.340 5.340 10 C -0.013 4.013 11 C -0.176 4.176 12 C -0.157 4.157 13 C -0.172 4.172 14 C 0.033 3.967 15 H 0.095 0.905 16 C 0.009 3.991 17 N -0.402 5.402 18 C 0.316 3.684 19 O -0.385 6.385 20 C -0.303 4.303 21 S 0.166 5.834 22 C -0.682 4.682 23 H 0.091 0.909 24 C -0.137 4.137 25 N -0.503 5.503 26 Si 0.745 3.255 27 H -0.197 1.197 28 H -0.206 1.206 29 H -0.206 1.206 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.122 0.878 34 H 0.118 0.882 35 H 0.088 0.912 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.097 0.903 43 H 0.098 0.902 44 H 0.106 0.894 45 H 0.224 0.776 46 H 0.106 0.894 47 H 0.106 0.894 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -20.821 -23.547 5.925 31.986 hybrid contribution 2.190 -1.656 -1.311 3.042 sum -18.631 -25.203 4.614 31.680 Atomic orbital electron populations 1.21398 0.92201 1.02198 1.02232 1.22435 0.95251 0.95314 1.01046 0.86195 1.23109 1.03260 1.01636 0.90514 1.22364 0.97863 1.05445 0.95800 0.85961 1.19803 0.84796 0.84496 0.78305 1.90854 1.66725 1.20570 1.60765 1.47993 1.19337 1.12582 1.54087 1.21793 0.99513 0.83277 0.96753 1.21948 0.98055 1.02094 0.95465 1.21520 0.96262 0.96535 1.01422 1.22038 1.02833 0.96911 0.95452 1.21507 0.84219 0.97196 0.93730 0.90451 1.22024 0.84106 0.92262 1.00747 1.46274 1.19678 1.08551 1.65698 1.20210 0.87844 0.81983 0.78376 1.90723 1.57745 1.44065 1.45996 1.23532 0.95902 1.07729 1.03109 1.85444 1.22032 0.94824 1.81130 1.22917 1.02773 0.95931 1.46572 0.90935 1.25002 0.98631 0.94677 0.95398 1.70038 1.37733 0.97956 1.44567 0.86118 0.82356 0.78223 0.78790 1.19655 1.20608 1.20597 0.92467 0.91528 0.91944 0.87844 0.88193 0.91161 0.89359 0.90564 0.91315 0.91625 0.91359 0.91006 0.90306 0.90196 0.89423 0.77643 0.89393 0.89413 0.92288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.75 10.19 37.16 0.38 -0.37 16 2 C -0.12 -1.02 5.92 -90.59 -0.54 -1.56 16 3 H 0.12 1.31 7.67 -51.93 -0.40 0.91 16 4 C -0.15 -1.04 9.88 -26.69 -0.26 -1.31 16 5 C -0.19 -1.54 4.97 -91.77 -0.46 -2.00 16 6 H 0.12 0.68 6.38 -51.93 -0.33 0.35 16 7 C 0.54 6.07 7.39 -10.98 -0.08 5.99 16 8 O -0.51 -8.17 11.66 5.56 0.06 -8.10 16 9 N -0.61 -5.47 2.97 -165.22 -0.49 -5.96 16 10 C 0.11 0.59 6.33 -3.71 -0.02 0.57 16 11 C -0.14 -0.69 6.08 -26.61 -0.16 -0.85 16 12 C -0.12 -0.71 5.88 -26.69 -0.16 -0.86 16 13 C -0.13 -1.12 5.13 -26.61 -0.14 -1.26 16 14 C 0.14 1.36 3.03 -67.60 -0.20 1.15 16 15 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 16 C 0.13 1.94 3.52 -4.04 -0.01 1.92 16 17 N -0.75 -11.22 5.24 -60.29 -0.32 -11.54 16 18 C 0.53 10.89 7.85 -10.98 -0.09 10.81 16 19 O -0.51 -12.95 15.86 5.56 0.09 -12.86 16 20 C -0.15 -3.24 6.16 36.01 0.22 -3.02 16 21 S -0.06 -1.73 20.57 -107.50 -2.21 -3.94 16 22 C -0.53 -15.62 9.50 30.94 0.29 -15.33 16 23 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 24 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 25 N -0.87 -26.82 13.22 55.49 0.73 -26.09 16 26 Si 0.92 21.87 29.55 -169.99 -5.02 16.84 16 27 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 28 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 29 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 30 H 0.06 0.27 7.90 -51.93 -0.41 -0.14 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.10 0.50 8.05 -51.93 -0.42 0.08 16 34 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.31 8.14 -51.92 -0.42 -0.11 16 36 H 0.09 0.35 5.48 -51.93 -0.28 0.06 16 37 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.08 0.62 7.24 -51.93 -0.38 0.25 16 43 H 0.08 1.42 7.09 -51.93 -0.37 1.05 16 44 H 0.09 1.53 6.38 -51.93 -0.33 1.20 16 45 H 0.39 4.46 7.65 -40.82 -0.31 4.15 16 46 H 0.09 1.73 8.14 -51.92 -0.42 1.30 16 47 H 0.09 1.71 8.14 -51.91 -0.42 1.29 16 48 H 0.27 7.64 8.31 -40.82 -0.34 7.31 16 LS Contribution 395.38 15.07 5.96 5.96 Total: -1.00 -37.72 395.38 -10.37 -48.09 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -7.85 Total: 1.71 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -1.32 Total: -4.10 kcal Atomic # 7 Polarization: -43.52 SS G_CDS: -0.07 Total: -43.59 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: 0.15 Total: -20.96 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: -1.73 SS G_CDS: -2.21 Total: -3.94 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -37.72 -10.37 -48.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082222533.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.450 kcal (2) G-P(sol) polarization free energy of solvation -37.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds