Wall clock time and date at job start Sat Apr 11 2020 06:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 108.73577 * 2 1 4 4 C 1.45818 * 108.84821 * 241.55879 * 2 1 3 5 5 C 1.54513 * 113.32757 * 173.99464 * 4 2 1 6 6 N 1.44675 * 109.15959 * 80.98191 * 5 4 2 7 7 C 1.34782 * 119.72343 * 81.69933 * 6 5 4 8 8 O 1.21356 * 119.99938 * 183.52314 * 7 6 5 9 9 C 1.49448 * 120.00083 * 3.51665 * 7 6 5 10 10 O 1.21353 * 119.99901 * 6.27527 * 9 7 6 11 11 N 1.34781 * 119.99930 * 185.99451 * 9 7 6 12 12 C 1.46929 * 120.62679 * 175.40716 * 11 9 7 13 13 C 1.52762 * 109.00353 * 233.58389 * 12 11 9 14 14 C 1.53039 * 109.38463 * 305.58627 * 13 12 11 15 15 C 1.50694 * 109.46037 * 181.26074 * 14 13 12 16 16 H 1.08002 * 120.00593 * 274.97713 * 15 14 13 17 17 C 1.37881 * 119.99795 * 94.97073 * 15 14 13 18 18 N 1.31523 * 119.99843 * 174.98140 * 17 15 14 19 19 Si 1.86795 * 120.00126 * 354.98912 * 17 15 14 20 20 H 1.48492 * 109.47518 * 94.96097 * 19 17 15 21 21 H 1.48498 * 109.47070 * 214.96145 * 19 17 15 22 22 H 1.48506 * 109.46880 * 334.95784 * 19 17 15 23 23 C 1.53042 * 109.53467 * 61.24552 * 14 13 12 24 24 C 1.46924 * 120.63074 * 355.68787 * 11 9 7 25 25 C 1.46399 * 120.55095 * 261.41651 * 6 5 4 26 26 C 1.53830 * 114.94779 * 42.77804 * 25 6 5 27 27 S 1.79949 * 111.13778 * 43.04148 * 26 25 6 28 28 H 1.08998 * 109.47023 * 301.57022 * 1 2 3 29 29 H 1.09000 * 109.46510 * 61.56657 * 1 2 3 30 30 H 1.09000 * 109.47130 * 181.56348 * 1 2 3 31 31 H 1.09001 * 108.72568 * 295.04597 * 4 2 1 32 32 H 1.09002 * 108.72056 * 53.08044 * 4 2 1 33 33 H 1.09002 * 109.47562 * 321.16366 * 5 4 2 34 34 H 1.09000 * 109.75522 * 200.97327 * 5 4 2 35 35 H 1.08999 * 109.58464 * 353.41498 * 12 11 9 36 36 H 1.08999 * 109.58736 * 113.84583 * 12 11 9 37 37 H 1.09006 * 109.56077 * 185.55562 * 13 12 11 38 38 H 1.08999 * 109.36173 * 65.50244 * 13 12 11 39 39 H 1.08998 * 109.46152 * 301.22246 * 14 13 12 40 40 H 0.96997 * 119.99486 * 180.02562 * 18 17 15 41 41 H 1.09003 * 109.49712 * 178.68640 * 23 14 13 42 42 H 1.08996 * 109.52817 * 58.59930 * 23 14 13 43 43 H 1.09000 * 109.58352 * 246.15794 * 24 11 9 44 44 H 1.08998 * 109.58299 * 6.43458 * 24 11 9 45 45 H 1.08995 * 108.38615 * 164.19639 * 25 6 5 46 46 H 1.08998 * 108.39017 * 281.36085 * 25 6 5 47 47 H 1.08993 * 109.14490 * 163.46888 * 26 25 6 48 48 H 1.09004 * 109.14378 * 282.61993 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8802 1.0322 0.0000 4 6 2.0011 -0.6572 -1.2134 5 6 3.5342 -0.5854 -1.3924 6 7 4.1552 -1.6124 -0.5846 7 6 4.2208 -2.8771 -1.0461 8 8 4.6826 -3.7549 -0.3470 9 6 3.7246 -3.1984 -2.4187 10 8 3.3687 -2.3056 -3.1597 11 7 3.6776 -4.4792 -2.8357 12 6 3.0995 -4.8202 -4.1427 13 6 2.0239 -5.8873 -3.9477 14 6 2.6206 -7.0781 -3.1940 15 6 1.5693 -8.1449 -3.0279 16 1 0.8792 -8.0986 -2.1984 17 6 1.4884 -9.1802 -3.9350 18 7 0.6373 -10.1631 -3.7368 19 14 2.5875 -9.1867 -5.4453 20 1 3.8035 -9.9931 -5.1692 21 1 1.8509 -9.7783 -6.5910 22 1 2.9819 -7.7938 -5.7765 23 6 3.1051 -6.6209 -1.8162 24 6 4.1980 -5.5615 -1.9893 25 6 4.7185 -1.2883 0.7272 26 6 3.8547 -0.3537 1.5913 27 16 2.1186 -0.8211 1.5165 28 1 -0.3633 0.5380 0.8756 29 1 -0.3632 0.4893 -0.9037 30 1 -0.3633 -1.0273 0.0280 31 1 1.7006 -1.7046 -1.1834 32 1 1.5273 -0.1846 -2.0738 33 1 3.8918 0.3937 -1.0735 34 1 3.7905 -0.7424 -2.4402 35 1 2.6535 -3.9309 -4.5881 36 1 3.8799 -5.2073 -4.7977 37 1 1.6579 -6.2184 -4.9196 38 1 1.1992 -5.4681 -3.3713 39 1 3.4609 -7.4814 -3.7591 40 1 0.5807 -10.8916 -4.3747 41 1 3.5087 -7.4741 -1.2709 42 1 2.2705 -6.1949 -1.2594 43 1 5.0700 -6.0103 -2.4651 44 1 4.4790 -5.1607 -1.0154 45 1 4.8723 -2.2182 1.2746 46 1 5.6901 -0.8176 0.5774 47 1 4.1950 -0.4069 2.6254 48 1 3.9652 0.6694 1.2316 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117968621.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:23 Heat of formation + Delta-G solvation = -41.109524 kcal Electronic energy + Delta-G solvation = -29187.310358 eV Core-core repulsion = 25369.485233 eV Total energy + Delta-G solvation = -3817.825125 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.17554 -38.90570 -37.80307 -36.82135 -35.09681 -33.43967 -31.71354 -31.48138 -30.50913 -29.20311 -27.02604 -25.23760 -24.52103 -23.09291 -22.72254 -22.18054 -21.08725 -19.76077 -18.74263 -17.25444 -17.23428 -16.93981 -16.73357 -16.17089 -16.00734 -15.65202 -15.08110 -14.62766 -14.33185 -14.30413 -14.02608 -13.90392 -13.63040 -13.38177 -13.22992 -13.14003 -12.71882 -12.57186 -12.48857 -12.17121 -12.10927 -11.89576 -11.81003 -11.71002 -11.32107 -11.24040 -10.99906 -10.79018 -10.68250 -10.38252 -9.98546 -9.86910 -9.70616 -9.50419 -9.15267 -9.03838 -8.60233 -8.49181 -8.27374 -7.92227 -6.07846 -4.06432 1.36383 1.45731 2.17410 2.36001 3.25344 3.26824 3.36467 3.37421 3.45430 4.14935 4.29250 4.35760 4.41239 4.53513 4.58129 4.81675 4.99971 5.09517 5.12259 5.21141 5.26442 5.31823 5.40759 5.49535 5.52607 5.56228 5.68296 5.75911 5.80153 5.84436 5.86317 5.96209 6.04692 6.09208 6.19941 6.34607 6.53035 6.67541 6.71799 6.81791 6.88344 6.92992 7.31899 7.43986 7.54773 7.75127 7.79316 8.08713 8.53276 8.98303 9.55560 11.05724 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018212 B = 0.003116 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.043223 B = 8982.737015 C = 9202.016956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.047 4.047 3 H 0.082 0.918 4 C -0.132 4.132 5 C 0.083 3.917 6 N -0.573 5.573 7 C 0.516 3.484 8 O -0.502 6.502 9 C 0.504 3.496 10 O -0.533 6.533 11 N -0.559 5.559 12 C 0.102 3.898 13 C -0.125 4.125 14 C 0.013 3.987 15 C -0.510 4.510 16 H 0.072 0.928 17 C 0.070 3.930 18 N -0.901 5.901 19 Si 0.875 3.125 20 H -0.279 1.279 21 H -0.289 1.289 22 H -0.261 1.261 23 C -0.113 4.113 24 C 0.038 3.962 25 C 0.106 3.894 26 C -0.104 4.104 27 S -0.240 6.240 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.133 0.867 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.031 0.969 40 H 0.263 0.737 41 H 0.070 0.930 42 H 0.054 0.946 43 H 0.060 0.940 44 H 0.151 0.849 45 H 0.099 0.901 46 H 0.072 0.928 47 H 0.118 0.882 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.354 24.032 7.108 26.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.176 4.176 3 H 0.101 0.899 4 C -0.171 4.171 5 C -0.040 4.040 6 N -0.305 5.305 7 C 0.300 3.700 8 O -0.379 6.379 9 C 0.287 3.713 10 O -0.413 6.413 11 N -0.289 5.289 12 C -0.019 4.019 13 C -0.164 4.164 14 C -0.006 4.006 15 C -0.548 4.548 16 H 0.090 0.910 17 C -0.132 4.132 18 N -0.539 5.539 19 Si 0.703 3.297 20 H -0.205 1.205 21 H -0.215 1.215 22 H -0.186 1.186 23 C -0.151 4.151 24 C -0.082 4.082 25 C -0.019 4.019 26 C -0.253 4.253 27 S -0.013 6.013 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.087 0.913 34 H 0.150 0.850 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.049 0.951 40 H 0.073 0.927 41 H 0.088 0.912 42 H 0.073 0.927 43 H 0.078 0.922 44 H 0.167 0.833 45 H 0.118 0.882 46 H 0.091 0.909 47 H 0.136 0.864 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.769 23.211 7.734 25.385 hybrid contribution 1.097 0.518 -1.693 2.083 sum 7.866 23.729 6.040 25.718 Atomic orbital electron populations 1.21695 0.91594 1.03402 1.02719 1.21959 1.00035 1.00814 0.94744 0.89924 1.21150 0.96331 1.02852 0.96817 1.22389 0.91927 0.90093 0.99545 1.47226 1.57305 1.08273 1.17706 1.20365 0.79288 0.82396 0.87905 1.90297 1.45546 1.43440 1.58603 1.19745 0.80505 0.83783 0.87284 1.90544 1.49793 1.44657 1.56277 1.48149 1.56033 1.05510 1.19243 1.21923 0.97301 0.99917 0.82771 1.22189 0.96688 0.95785 1.01708 1.19163 0.96144 0.93290 0.92002 1.20995 1.15629 1.06050 1.12102 0.91012 1.25080 0.95259 0.95083 0.97757 1.69923 1.37053 1.10423 1.36514 0.86887 0.80870 0.78712 0.83274 1.20512 1.21550 1.18563 1.21881 0.96793 0.96604 0.99804 1.23552 0.97055 0.88608 0.98983 1.21668 0.95121 1.01349 0.83737 1.23710 0.95394 1.01925 1.04268 1.86937 1.08429 1.72173 1.33712 0.91608 0.90938 0.91532 0.90633 0.89621 0.91278 0.84964 0.89857 0.91693 0.91434 0.92386 0.95088 0.92733 0.91179 0.92701 0.92155 0.83327 0.88233 0.90942 0.86355 0.89650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.06 37.16 0.34 -0.79 16 2 C -0.05 -0.41 2.63 -30.13 -0.08 -0.49 16 3 H 0.08 0.60 8.12 -51.92 -0.42 0.18 16 4 C -0.13 -1.32 3.93 -29.33 -0.12 -1.44 16 5 C 0.08 0.81 4.95 -4.22 -0.02 0.79 16 6 N -0.57 -6.45 2.39 -174.24 -0.42 -6.87 16 7 C 0.52 7.43 7.34 -11.58 -0.09 7.34 16 8 O -0.50 -7.99 12.34 5.49 0.07 -7.92 16 9 C 0.50 7.97 7.27 -11.58 -0.08 7.89 16 10 O -0.53 -8.40 11.97 5.49 0.07 -8.33 16 11 N -0.56 -9.54 2.98 -173.54 -0.52 -10.05 16 12 C 0.10 1.78 6.39 -3.93 -0.03 1.76 16 13 C -0.13 -2.55 5.07 -26.83 -0.14 -2.69 16 14 C 0.01 0.30 1.61 -91.73 -0.15 0.15 16 15 C -0.51 -14.02 8.86 -34.44 -0.31 -14.32 16 16 H 0.07 2.17 8.06 -52.49 -0.42 1.75 16 17 C 0.07 1.97 5.47 -17.81 -0.10 1.87 16 18 N -0.90 -27.36 13.96 55.43 0.77 -26.59 16 19 Si 0.88 21.08 26.57 -169.99 -4.52 16.56 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.26 -5.87 6.10 56.52 0.34 -5.52 16 23 C -0.11 -2.26 5.34 -26.61 -0.14 -2.41 16 24 C 0.04 0.66 6.28 -3.71 -0.02 0.64 16 25 C 0.11 0.95 6.02 -3.66 -0.02 0.93 16 26 C -0.10 -0.77 5.90 37.59 0.22 -0.55 16 27 S -0.24 -2.49 20.95 -107.50 -2.25 -4.75 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.50 8.06 -51.93 -0.42 0.09 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.99 7.42 -51.93 -0.39 0.61 16 32 H 0.09 0.79 8.00 -51.93 -0.42 0.37 16 33 H 0.07 0.51 7.53 -51.93 -0.39 0.12 16 34 H 0.13 1.50 5.16 -52.26 -0.27 1.23 16 35 H 0.08 1.38 7.03 -51.93 -0.37 1.01 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.07 1.41 7.17 -51.93 -0.37 1.04 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.03 0.71 5.59 -51.93 -0.29 0.42 16 40 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 42 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.15 2.55 3.70 -57.20 -0.21 2.34 16 45 H 0.10 1.05 6.93 -51.93 -0.36 0.69 16 46 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.12 0.70 8.14 -51.80 -0.42 0.28 16 48 H 0.08 0.50 7.91 -51.79 -0.41 0.09 16 LS Contribution 369.84 15.07 5.57 5.57 Total: -1.00 -30.91 369.84 -9.68 -40.59 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -7.73 Total: 3.09 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -0.72 Total: -1.31 kcal Atomic # 7 Polarization: -43.35 SS G_CDS: -0.16 Total: -43.51 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: 0.13 Total: -16.25 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.52 Total: 16.56 kcal Atomic # 16 Polarization: -2.49 SS G_CDS: -2.25 Total: -4.75 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.91 -9.68 -40.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117968621.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.521 kcal (2) G-P(sol) polarization free energy of solvation -30.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds