Wall clock time and date at job start Sat Apr 11 2020 06:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 108.73577 * 2 1 4 4 C 1.45818 * 108.84821 * 241.55879 * 2 1 3 5 5 C 1.54513 * 113.32757 * 173.99464 * 4 2 1 6 6 N 1.44675 * 109.15959 * 80.98191 * 5 4 2 7 7 C 1.34782 * 119.72343 * 81.69933 * 6 5 4 8 8 O 1.21356 * 119.99938 * 183.52314 * 7 6 5 9 9 C 1.49448 * 120.00083 * 3.51665 * 7 6 5 10 10 O 1.21353 * 119.99901 * 6.27527 * 9 7 6 11 11 N 1.34781 * 119.99930 * 185.99451 * 9 7 6 12 12 C 1.46929 * 120.62679 * 175.40716 * 11 9 7 13 13 C 1.52762 * 109.00353 * 233.58389 * 12 11 9 14 14 C 1.53039 * 109.38463 * 305.58627 * 13 12 11 15 15 C 1.50694 * 109.46037 * 181.26074 * 14 13 12 16 16 H 1.08002 * 120.00593 * 274.97713 * 15 14 13 17 17 C 1.37881 * 119.99795 * 94.97073 * 15 14 13 18 18 N 1.31523 * 119.99843 * 174.98140 * 17 15 14 19 19 Si 1.86795 * 120.00126 * 354.98912 * 17 15 14 20 20 H 1.48492 * 109.47518 * 94.96097 * 19 17 15 21 21 H 1.48498 * 109.47070 * 214.96145 * 19 17 15 22 22 H 1.48506 * 109.46880 * 334.95784 * 19 17 15 23 23 C 1.53042 * 109.53467 * 61.24552 * 14 13 12 24 24 C 1.46924 * 120.63074 * 355.68787 * 11 9 7 25 25 C 1.46399 * 120.55095 * 261.41651 * 6 5 4 26 26 C 1.53830 * 114.94779 * 42.77804 * 25 6 5 27 27 S 1.79949 * 111.13778 * 43.04148 * 26 25 6 28 28 H 1.08998 * 109.47023 * 301.57022 * 1 2 3 29 29 H 1.09000 * 109.46510 * 61.56657 * 1 2 3 30 30 H 1.09000 * 109.47130 * 181.56348 * 1 2 3 31 31 H 1.09001 * 108.72568 * 295.04597 * 4 2 1 32 32 H 1.09002 * 108.72056 * 53.08044 * 4 2 1 33 33 H 1.09002 * 109.47562 * 321.16366 * 5 4 2 34 34 H 1.09000 * 109.75522 * 200.97327 * 5 4 2 35 35 H 1.08999 * 109.58464 * 353.41498 * 12 11 9 36 36 H 1.08999 * 109.58736 * 113.84583 * 12 11 9 37 37 H 1.09006 * 109.56077 * 185.55562 * 13 12 11 38 38 H 1.08999 * 109.36173 * 65.50244 * 13 12 11 39 39 H 1.08998 * 109.46152 * 301.22246 * 14 13 12 40 40 H 0.96997 * 119.99486 * 180.02562 * 18 17 15 41 41 H 1.09003 * 109.49712 * 178.68640 * 23 14 13 42 42 H 1.08996 * 109.52817 * 58.59930 * 23 14 13 43 43 H 1.09000 * 109.58352 * 246.15794 * 24 11 9 44 44 H 1.08998 * 109.58299 * 6.43458 * 24 11 9 45 45 H 1.08995 * 108.38615 * 164.19639 * 25 6 5 46 46 H 1.08998 * 108.39017 * 281.36085 * 25 6 5 47 47 H 1.08993 * 109.14490 * 163.46888 * 26 25 6 48 48 H 1.09004 * 109.14378 * 282.61993 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8802 1.0322 0.0000 4 6 2.0011 -0.6572 -1.2134 5 6 3.5342 -0.5854 -1.3924 6 7 4.1552 -1.6124 -0.5846 7 6 4.2208 -2.8771 -1.0461 8 8 4.6826 -3.7549 -0.3470 9 6 3.7246 -3.1984 -2.4187 10 8 3.3687 -2.3056 -3.1597 11 7 3.6776 -4.4792 -2.8357 12 6 3.0995 -4.8202 -4.1427 13 6 2.0239 -5.8873 -3.9477 14 6 2.6206 -7.0781 -3.1940 15 6 1.5693 -8.1449 -3.0279 16 1 0.8792 -8.0986 -2.1984 17 6 1.4884 -9.1802 -3.9350 18 7 0.6373 -10.1631 -3.7368 19 14 2.5875 -9.1867 -5.4453 20 1 3.8035 -9.9931 -5.1692 21 1 1.8509 -9.7783 -6.5910 22 1 2.9819 -7.7938 -5.7765 23 6 3.1051 -6.6209 -1.8162 24 6 4.1980 -5.5615 -1.9893 25 6 4.7185 -1.2883 0.7272 26 6 3.8547 -0.3537 1.5913 27 16 2.1186 -0.8211 1.5165 28 1 -0.3633 0.5380 0.8756 29 1 -0.3632 0.4893 -0.9037 30 1 -0.3633 -1.0273 0.0280 31 1 1.7006 -1.7046 -1.1834 32 1 1.5273 -0.1846 -2.0738 33 1 3.8918 0.3937 -1.0735 34 1 3.7905 -0.7424 -2.4402 35 1 2.6535 -3.9309 -4.5881 36 1 3.8799 -5.2073 -4.7977 37 1 1.6579 -6.2184 -4.9196 38 1 1.1992 -5.4681 -3.3713 39 1 3.4609 -7.4814 -3.7591 40 1 0.5807 -10.8916 -4.3747 41 1 3.5087 -7.4741 -1.2709 42 1 2.2705 -6.1949 -1.2594 43 1 5.0700 -6.0103 -2.4651 44 1 4.4790 -5.1607 -1.0154 45 1 4.8723 -2.2182 1.2746 46 1 5.6901 -0.8176 0.5774 47 1 4.1950 -0.4069 2.6254 48 1 3.9652 0.6694 1.2316 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117968621.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:22 Heat of formation + Delta-G solvation = -59.665651 kcal Electronic energy + Delta-G solvation = -29188.115012 eV Core-core repulsion = 25369.485233 eV Total energy + Delta-G solvation = -3818.629779 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.31048 -40.12073 -38.96934 -38.04292 -35.92449 -35.20160 -33.40372 -32.44602 -32.00184 -30.00320 -28.65880 -26.55329 -25.28968 -24.41790 -24.21087 -23.14502 -22.31166 -21.01906 -20.13656 -19.04224 -18.36761 -18.22402 -17.63545 -17.36627 -17.01621 -16.60284 -16.30707 -16.01768 -15.64050 -15.32783 -15.11405 -14.88986 -14.86599 -14.79485 -14.53732 -14.30747 -14.12807 -13.96631 -13.72703 -13.42184 -13.24320 -12.93194 -12.86580 -12.64240 -12.53765 -12.46791 -12.24538 -12.03800 -11.96203 -11.95324 -11.73335 -11.40792 -11.15593 -11.04506 -10.66752 -10.63437 -10.03594 -9.81414 -9.63616 -8.72006 -8.27822 -6.31821 0.28781 0.68615 1.19542 1.36546 1.38459 1.50500 1.62343 2.08354 2.34612 2.36978 3.04771 3.07575 3.55079 3.66003 3.84068 3.99998 4.01747 4.13511 4.21093 4.25114 4.26725 4.29503 4.42494 4.50471 4.51666 4.56076 4.62527 4.67889 4.73632 4.77665 4.81503 4.84999 4.91270 4.92856 4.98204 5.13235 5.15372 5.16507 5.21123 5.35591 5.48301 5.58171 5.70042 5.73423 5.88345 6.23500 6.33992 6.64064 6.75181 6.88545 7.33871 8.89712 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018212 B = 0.003116 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.043223 B = 8982.737015 C = 9202.016956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.035 4.035 3 H 0.110 0.890 4 C -0.125 4.125 5 C 0.082 3.918 6 N -0.562 5.562 7 C 0.511 3.489 8 O -0.524 6.524 9 C 0.504 3.496 10 O -0.531 6.531 11 N -0.570 5.570 12 C 0.111 3.889 13 C -0.119 4.119 14 C 0.013 3.987 15 C -0.515 4.515 16 H 0.022 0.978 17 C 0.008 3.992 18 N -0.954 5.954 19 Si 0.943 3.057 20 H -0.271 1.271 21 H -0.289 1.289 22 H -0.231 1.231 23 C -0.108 4.108 24 C 0.051 3.949 25 C 0.102 3.898 26 C -0.085 4.085 27 S -0.309 6.309 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.041 0.959 31 H 0.037 0.963 32 H 0.096 0.904 33 H 0.106 0.894 34 H 0.120 0.880 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.064 0.936 38 H 0.042 0.958 39 H 0.038 0.962 40 H 0.265 0.735 41 H 0.064 0.936 42 H 0.035 0.965 43 H 0.075 0.925 44 H 0.157 0.843 45 H 0.081 0.919 46 H 0.103 0.897 47 H 0.135 0.865 48 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.934 27.559 6.174 29.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.163 4.163 3 H 0.129 0.871 4 C -0.165 4.165 5 C -0.040 4.040 6 N -0.292 5.292 7 C 0.295 3.705 8 O -0.403 6.403 9 C 0.287 3.713 10 O -0.410 6.410 11 N -0.302 5.302 12 C -0.011 4.011 13 C -0.158 4.158 14 C -0.006 4.006 15 C -0.553 4.553 16 H 0.041 0.959 17 C -0.188 4.188 18 N -0.594 5.594 19 Si 0.766 3.234 20 H -0.197 1.197 21 H -0.216 1.216 22 H -0.153 1.153 23 C -0.146 4.146 24 C -0.070 4.070 25 C -0.022 4.022 26 C -0.234 4.234 27 S -0.082 6.082 28 H 0.090 0.910 29 H 0.106 0.894 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.115 0.885 33 H 0.124 0.876 34 H 0.138 0.862 35 H 0.113 0.887 36 H 0.099 0.901 37 H 0.082 0.918 38 H 0.060 0.940 39 H 0.056 0.944 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.054 0.946 43 H 0.093 0.907 44 H 0.173 0.827 45 H 0.099 0.901 46 H 0.121 0.879 47 H 0.153 0.847 48 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 9.349 26.813 6.818 29.204 hybrid contribution 0.188 -0.506 -1.277 1.386 sum 9.537 26.307 5.541 28.526 Atomic orbital electron populations 1.21697 0.91616 1.02141 1.03822 1.21939 0.99979 1.01572 0.92770 0.87149 1.21097 0.96736 1.00733 0.97962 1.22457 0.91549 0.91180 0.98798 1.47312 1.56047 1.07348 1.18527 1.20132 0.79648 0.83445 0.87293 1.90262 1.46978 1.44258 1.58792 1.20050 0.80034 0.83289 0.87925 1.90553 1.49421 1.44496 1.56551 1.48166 1.56830 1.05996 1.19188 1.21782 0.96670 0.99206 0.83411 1.21996 0.97270 0.95814 1.00728 1.19143 0.94792 0.92834 0.93845 1.21268 1.15833 1.07749 1.10475 0.95917 1.26023 0.97003 0.94437 1.01361 1.70090 1.39598 1.11591 1.38146 0.85800 0.78681 0.80409 0.78489 1.19675 1.21569 1.15327 1.21759 0.97306 0.97478 0.98064 1.23427 0.95883 0.87763 0.99879 1.21895 0.96657 1.01253 0.82440 1.23752 0.91973 1.02590 1.05068 1.87271 1.12093 1.73452 1.35358 0.90951 0.89353 0.93957 0.94402 0.88548 0.87612 0.86220 0.88683 0.90106 0.91751 0.93962 0.94382 0.92647 0.91752 0.94569 0.90715 0.82745 0.90094 0.87886 0.84700 0.86939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 9.06 71.98 0.65 -1.42 16 2 C -0.03 -0.53 2.63 28.40 0.07 -0.46 16 3 H 0.11 1.13 8.12 -2.39 -0.02 1.11 16 4 C -0.13 -2.28 3.93 28.91 0.11 -2.16 16 5 C 0.08 1.35 4.95 87.23 0.43 1.79 16 6 N -0.56 -11.34 2.39 -823.53 -1.97 -13.31 16 7 C 0.51 14.07 7.34 87.27 0.64 14.71 16 8 O -0.52 -16.28 12.34 -3.26 -0.04 -16.32 16 9 C 0.50 15.23 7.27 87.27 0.63 15.86 16 10 O -0.53 -15.74 11.97 -3.26 -0.04 -15.78 16 11 N -0.57 -18.71 2.98 -821.31 -2.45 -21.15 16 12 C 0.11 3.65 6.39 86.22 0.55 4.20 16 13 C -0.12 -4.82 5.07 30.53 0.15 -4.67 16 14 C 0.01 0.59 1.61 -11.51 -0.02 0.57 16 15 C -0.52 -29.53 8.86 25.60 0.23 -29.30 16 16 H 0.02 1.47 8.06 -2.91 -0.02 1.45 16 17 C 0.01 0.47 5.47 84.65 0.46 0.94 16 18 N -0.95 -60.23 13.96 21.45 0.30 -59.93 16 19 Si 0.94 43.29 26.57 68.60 1.82 45.11 16 20 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 21 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 22 H -0.23 -9.36 6.10 99.48 0.61 -8.75 16 23 C -0.11 -4.42 5.34 30.67 0.16 -4.25 16 24 C 0.05 1.72 6.28 86.36 0.54 2.26 16 25 C 0.10 1.52 6.02 86.68 0.52 2.04 16 26 C -0.09 -0.97 5.90 72.26 0.43 -0.54 16 27 S -0.31 -6.01 20.95 -56.49 -1.18 -7.20 16 28 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.09 1.06 8.06 -2.39 -0.02 1.04 16 30 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.04 0.98 7.42 -2.39 -0.02 0.97 16 32 H 0.10 1.55 8.00 -2.39 -0.02 1.53 16 33 H 0.11 1.02 7.53 -2.39 -0.02 1.00 16 34 H 0.12 2.37 5.16 -7.67 -0.04 2.33 16 35 H 0.09 2.92 7.03 -2.39 -0.02 2.90 16 36 H 0.08 2.43 8.14 -2.39 -0.02 2.42 16 37 H 0.06 2.61 7.17 -2.38 -0.02 2.60 16 38 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.04 1.68 5.59 -2.39 -0.01 1.67 16 40 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 41 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 42 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 44 H 0.16 5.21 3.70 -85.91 -0.32 4.89 16 45 H 0.08 1.57 6.93 -2.39 -0.02 1.56 16 46 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.13 1.15 8.14 -2.47 -0.02 1.13 16 48 H 0.11 0.72 7.91 -2.47 -0.02 0.70 16 Total: -1.00 -71.07 369.84 2.54 -68.53 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: 0.52 Total: 20.51 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: 5.58 Total: -0.45 kcal Atomic # 7 Polarization: -90.28 SS G_CDS: -4.12 Total: -94.40 kcal Atomic # 8 Polarization: -32.03 SS G_CDS: -0.08 Total: -32.10 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 1.82 Total: 45.11 kcal Atomic # 16 Polarization: -6.01 SS G_CDS: -1.18 Total: -7.20 kcal Total: -71.07 2.54 -68.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117968621.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.863 kcal (2) G-P(sol) polarization free energy of solvation -71.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds