Wall clock time and date at job start Sat Apr 11 2020 06:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 108.73329 * 2 1 4 4 C 1.45826 * 108.84277 * 118.43281 * 2 1 3 5 5 C 1.53477 * 113.24327 * 185.87424 * 4 2 1 6 6 N 1.44681 * 109.73124 * 278.97854 * 5 4 2 7 7 C 1.34777 * 119.72763 * 278.68955 * 6 5 4 8 8 O 1.21353 * 119.99881 * 4.78983 * 7 6 5 9 9 C 1.49448 * 120.00236 * 184.78742 * 7 6 5 10 10 O 1.21350 * 119.99730 * 274.60015 * 9 7 6 11 11 N 1.34778 * 120.00011 * 94.32626 * 9 7 6 12 12 C 1.46928 * 120.62893 * 174.93626 * 11 9 7 13 13 C 1.53622 * 108.53798 * 126.36994 * 12 11 9 14 14 C 1.53038 * 109.24414 * 54.85568 * 13 12 11 15 15 C 1.50704 * 109.45747 * 178.48877 * 14 13 12 16 16 H 1.07999 * 119.99887 * 120.07611 * 15 14 13 17 17 C 1.37879 * 120.00261 * 300.06356 * 15 14 13 18 18 N 1.31513 * 119.99571 * 0.02562 * 17 15 14 19 19 Si 1.86790 * 120.00049 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.47243 * 90.00681 * 19 17 15 21 21 H 1.48498 * 109.47308 * 210.00150 * 19 17 15 22 22 H 1.48500 * 109.47488 * 330.00557 * 19 17 15 23 23 C 1.53032 * 109.54025 * 298.50834 * 14 13 12 24 24 C 1.46928 * 120.62851 * 355.21967 * 11 9 7 25 25 C 1.46398 * 120.54769 * 98.41086 * 6 5 4 26 26 C 1.53826 * 114.94722 * 317.73583 * 25 6 5 27 27 S 1.79947 * 111.14062 * 316.95448 * 26 25 6 28 28 H 1.09000 * 109.47109 * 178.44225 * 1 2 3 29 29 H 1.08999 * 109.47211 * 298.44245 * 1 2 3 30 30 H 1.08997 * 109.47200 * 58.43818 * 1 2 3 31 31 H 1.09004 * 108.72082 * 306.91937 * 4 2 1 32 32 H 1.08997 * 108.72159 * 65.08260 * 4 2 1 33 33 H 1.08996 * 109.19932 * 158.98200 * 5 4 2 34 34 H 1.09003 * 109.47503 * 39.13917 * 5 4 2 35 35 H 1.08993 * 109.58674 * 246.20013 * 12 11 9 36 36 H 1.08994 * 109.58470 * 6.62821 * 12 11 9 37 37 H 1.09007 * 109.63702 * 294.85861 * 13 12 11 38 38 H 1.09006 * 109.45643 * 174.74198 * 13 12 11 39 39 H 1.09000 * 109.45959 * 58.53466 * 14 13 12 40 40 H 0.97008 * 119.99485 * 179.97438 * 18 17 15 41 41 H 1.09000 * 109.49792 * 301.41674 * 23 14 13 42 42 H 1.08998 * 109.52704 * 181.33106 * 23 14 13 43 43 H 1.08997 * 109.58443 * 353.36972 * 24 11 9 44 44 H 1.08989 * 109.58560 * 113.80070 * 24 11 9 45 45 H 1.08999 * 108.38867 * 79.15363 * 25 6 5 46 46 H 1.09000 * 108.38576 * 196.32036 * 25 6 5 47 47 H 1.09002 * 109.14469 * 77.38672 * 26 25 6 48 48 H 1.09002 * 109.14320 * 196.58753 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8801 1.0323 0.0000 4 6 2.0010 -0.6571 1.2136 5 6 3.5242 -0.5874 1.3880 6 7 4.1552 -1.6124 0.5852 7 6 4.2199 -2.8771 1.0463 8 8 3.6747 -3.1711 2.0899 9 6 4.9631 -3.9176 0.2726 10 8 4.4084 -4.5184 -0.6241 11 7 6.2509 -4.1846 0.5670 12 6 6.9617 -5.2790 -0.1082 13 6 8.2556 -4.7183 -0.7178 14 6 9.0682 -4.0221 0.3763 15 6 10.3561 -3.5025 -0.2088 16 1 10.5768 -2.4458 -0.1753 17 6 11.2528 -4.3760 -0.7866 18 7 10.9839 -5.6627 -0.8276 19 14 12.8495 -3.7320 -1.5111 20 1 13.9036 -3.7327 -0.4651 21 1 13.2693 -4.6040 -2.6374 22 1 12.6451 -2.3472 -2.0068 23 6 8.2610 -2.8550 0.9492 24 6 6.9688 -3.3909 1.5737 25 6 4.7186 -1.2883 -0.7267 26 6 3.8547 -0.3539 -1.5909 27 16 2.1187 -0.8214 -1.5163 28 1 -0.3633 -1.0273 -0.0279 29 1 -0.3633 0.4894 0.9036 30 1 -0.3633 0.5379 -0.8756 31 1 1.5271 -0.1843 2.0739 32 1 1.7024 -1.7049 1.1826 33 1 3.7724 -0.7439 2.4377 34 1 3.8817 0.3928 1.0723 35 1 7.2028 -6.0587 0.6142 36 1 6.3329 -5.6910 -0.8974 37 1 8.0106 -4.0011 -1.5012 38 1 8.8406 -5.5345 -1.1419 39 1 9.2918 -4.7338 1.1711 40 1 11.6146 -6.2773 -1.2344 41 1 8.0159 -2.1553 0.1501 42 1 8.8492 -2.3448 1.7119 43 1 6.3446 -2.5569 1.8944 44 1 7.2105 -4.0198 2.4304 45 1 5.6902 -0.8176 -0.5769 46 1 4.8724 -2.2183 -1.2740 47 1 3.9653 0.6692 -1.2314 48 1 4.1945 -0.4079 -2.6252 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117968622.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:26 Heat of formation + Delta-G solvation = -70.939409 kcal Electronic energy + Delta-G solvation = -29127.572602 eV Core-core repulsion = 25308.453957 eV Total energy + Delta-G solvation = -3819.118646 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.94193 -38.96599 -37.13091 -36.85675 -35.31084 -33.65542 -31.35975 -31.22293 -30.50025 -29.55189 -26.68609 -25.30861 -24.02220 -23.41909 -22.75422 -22.17723 -21.26146 -19.50084 -18.55616 -17.61549 -17.04664 -16.90136 -16.58985 -16.11524 -15.73981 -15.16602 -14.91266 -14.65400 -14.59929 -14.33232 -13.93959 -13.78462 -13.47725 -13.36395 -13.20085 -12.89452 -12.78191 -12.48928 -12.34076 -12.23577 -11.94437 -11.86768 -11.66631 -11.39048 -11.33613 -11.25525 -11.10608 -11.00142 -10.72418 -10.51431 -10.18335 -9.93834 -9.68776 -9.44249 -9.22701 -9.02583 -8.97545 -8.45094 -8.20679 -7.86759 -6.08689 -4.15740 1.40341 2.19853 2.23115 2.35691 2.76913 3.24182 3.32080 3.33834 3.46020 4.18088 4.25332 4.35416 4.37613 4.51036 4.64966 4.81245 4.98831 5.05961 5.15306 5.21178 5.23753 5.24657 5.28970 5.41375 5.45791 5.49219 5.58493 5.65035 5.77336 5.77571 5.90757 5.92591 6.12259 6.27271 6.27940 6.30670 6.48705 6.63774 6.82071 6.93494 7.06108 7.20307 7.59206 7.61161 7.78018 7.83448 7.96836 8.14290 8.31831 8.87432 9.49897 10.96857 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019604 B = 0.003003 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.908687 B = 9321.089118 C = 9729.186355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.049 4.049 3 H 0.083 0.917 4 C -0.140 4.140 5 C 0.112 3.888 6 N -0.587 5.587 7 C 0.527 3.473 8 O -0.513 6.513 9 C 0.509 3.491 10 O -0.523 6.523 11 N -0.580 5.580 12 C 0.106 3.894 13 C -0.121 4.121 14 C 0.048 3.952 15 C -0.514 4.514 16 H 0.055 0.945 17 C 0.062 3.938 18 N -0.889 5.889 19 Si 0.891 3.109 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.275 1.275 23 C -0.120 4.120 24 C 0.106 3.894 25 C 0.101 3.899 26 C -0.102 4.102 27 S -0.235 6.235 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.040 0.960 38 H 0.107 0.893 39 H 0.029 0.971 40 H 0.262 0.738 41 H 0.053 0.947 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.071 0.929 45 H 0.081 0.919 46 H 0.093 0.907 47 H 0.088 0.912 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.677 13.031 2.513 20.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.178 4.178 3 H 0.102 0.898 4 C -0.180 4.180 5 C -0.011 4.011 6 N -0.322 5.322 7 C 0.311 3.689 8 O -0.387 6.387 9 C 0.290 3.710 10 O -0.400 6.400 11 N -0.314 5.314 12 C -0.015 4.015 13 C -0.159 4.159 14 C 0.030 3.970 15 C -0.553 4.553 16 H 0.073 0.927 17 C -0.139 4.139 18 N -0.528 5.528 19 Si 0.719 3.281 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.200 1.200 23 C -0.159 4.159 24 C -0.017 4.017 25 C -0.024 4.024 26 C -0.251 4.251 27 S -0.008 6.008 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.107 0.893 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.059 0.941 38 H 0.125 0.875 39 H 0.047 0.953 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.089 0.911 45 H 0.099 0.901 46 H 0.111 0.889 47 H 0.106 0.894 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -16.739 11.745 1.814 20.529 hybrid contribution 1.677 1.115 0.383 2.050 sum -15.062 12.860 2.196 19.926 Atomic orbital electron populations 1.21674 0.91683 1.03219 1.02665 1.21912 0.99986 1.00928 0.94943 0.89842 1.21038 0.96370 1.03461 0.97141 1.21307 0.92059 0.90835 0.96894 1.47395 1.58220 1.07979 1.18601 1.20436 0.80841 0.82461 0.85188 1.90767 1.45809 1.79255 1.22821 1.20041 0.82646 0.84483 0.83813 1.90789 1.67377 1.52154 1.29633 1.48323 1.09233 1.33796 1.40012 1.22159 0.94871 0.87672 0.96775 1.22106 0.92385 1.02284 0.99153 1.18652 0.92547 0.91828 0.94021 1.21141 1.02404 0.93718 1.37990 0.92686 1.24963 0.98167 0.94875 0.95923 1.69834 1.36088 1.01925 1.44934 0.86612 0.83843 0.78806 0.78831 1.20720 1.21222 1.19989 1.22010 0.93802 1.00361 0.99686 1.21939 0.94750 0.94223 0.90766 1.21833 0.95833 1.01641 0.83130 1.23714 0.94952 1.01819 1.04601 1.86953 1.08701 1.72015 1.33127 0.91666 0.91118 0.91537 0.89930 0.89870 0.89296 0.90094 0.91586 0.90177 0.94110 0.87527 0.95291 0.92846 0.92815 0.91753 0.91844 0.91099 0.90119 0.88904 0.89363 0.86049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.99 9.06 37.16 0.34 -0.65 16 2 C -0.05 -0.42 2.63 -30.12 -0.08 -0.50 16 3 H 0.08 0.58 8.11 -51.92 -0.42 0.16 16 4 C -0.14 -1.30 4.54 -29.88 -0.14 -1.44 16 5 C 0.11 1.08 5.16 -4.77 -0.02 1.06 16 6 N -0.59 -7.33 2.42 -174.90 -0.42 -7.75 16 7 C 0.53 8.54 5.16 -11.59 -0.06 8.48 16 8 O -0.51 -9.29 16.45 5.49 0.09 -9.20 16 9 C 0.51 9.28 5.65 -11.59 -0.07 9.22 16 10 O -0.52 -10.89 16.13 5.50 0.09 -10.80 16 11 N -0.58 -10.37 2.97 -173.02 -0.51 -10.88 16 12 C 0.11 2.03 6.47 -3.49 -0.02 2.01 16 13 C -0.12 -2.63 5.17 -26.39 -0.14 -2.76 16 14 C 0.05 1.08 2.06 -91.73 -0.19 0.89 16 15 C -0.51 -13.03 8.56 -34.44 -0.29 -13.33 16 16 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 17 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 18 N -0.89 -23.94 11.30 55.43 0.63 -23.31 16 19 Si 0.89 20.26 29.54 -169.99 -5.02 15.24 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 23 C -0.12 -2.18 5.30 -26.61 -0.14 -2.32 16 24 C 0.11 1.72 6.32 -3.71 -0.02 1.69 16 25 C 0.10 1.14 5.86 -3.67 -0.02 1.12 16 26 C -0.10 -0.93 5.90 37.59 0.22 -0.71 16 27 S -0.24 -2.62 20.95 -107.50 -2.25 -4.87 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.40 8.06 -51.93 -0.42 -0.01 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.61 8.00 -51.93 -0.42 0.19 16 32 H 0.08 1.05 7.51 -51.93 -0.39 0.66 16 33 H 0.09 0.89 7.71 -51.93 -0.40 0.49 16 34 H 0.08 0.58 7.51 -51.93 -0.39 0.19 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.08 1.55 7.00 -51.93 -0.36 1.19 16 37 H 0.04 0.89 8.14 -51.92 -0.42 0.47 16 38 H 0.11 2.62 6.03 -51.93 -0.31 2.30 16 39 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 41 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.06 0.92 6.37 -51.93 -0.33 0.59 16 44 H 0.07 1.13 8.14 -51.94 -0.42 0.71 16 45 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.09 1.30 6.10 -51.93 -0.32 0.99 16 47 H 0.09 0.62 7.91 -51.80 -0.41 0.21 16 48 H 0.12 1.01 8.14 -51.79 -0.42 0.58 16 LS Contribution 381.98 15.07 5.76 5.76 Total: -1.00 -30.07 381.98 -10.31 -40.38 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -7.94 Total: 1.14 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: -0.73 Total: 4.30 kcal Atomic # 7 Polarization: -41.63 SS G_CDS: -0.31 Total: -41.94 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: 0.18 Total: -20.01 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Atomic # 16 Polarization: -2.62 SS G_CDS: -2.25 Total: -4.87 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.07 -10.31 -40.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117968622.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.559 kcal (2) G-P(sol) polarization free energy of solvation -30.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds