Wall clock time and date at job start Sat Apr 11 2020 06:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 108.73329 * 2 1 4 4 C 1.45826 * 108.84277 * 118.43281 * 2 1 3 5 5 C 1.53477 * 113.24327 * 185.87424 * 4 2 1 6 6 N 1.44681 * 109.73124 * 278.97854 * 5 4 2 7 7 C 1.34777 * 119.72763 * 278.68955 * 6 5 4 8 8 O 1.21353 * 119.99881 * 4.78983 * 7 6 5 9 9 C 1.49448 * 120.00236 * 184.78742 * 7 6 5 10 10 O 1.21350 * 119.99730 * 274.60015 * 9 7 6 11 11 N 1.34778 * 120.00011 * 94.32626 * 9 7 6 12 12 C 1.46928 * 120.62893 * 174.93626 * 11 9 7 13 13 C 1.53622 * 108.53798 * 126.36994 * 12 11 9 14 14 C 1.53038 * 109.24414 * 54.85568 * 13 12 11 15 15 C 1.50704 * 109.45747 * 178.48877 * 14 13 12 16 16 H 1.07999 * 119.99887 * 120.07611 * 15 14 13 17 17 C 1.37879 * 120.00261 * 300.06356 * 15 14 13 18 18 N 1.31513 * 119.99571 * 0.02562 * 17 15 14 19 19 Si 1.86790 * 120.00049 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.47243 * 90.00681 * 19 17 15 21 21 H 1.48498 * 109.47308 * 210.00150 * 19 17 15 22 22 H 1.48500 * 109.47488 * 330.00557 * 19 17 15 23 23 C 1.53032 * 109.54025 * 298.50834 * 14 13 12 24 24 C 1.46928 * 120.62851 * 355.21967 * 11 9 7 25 25 C 1.46398 * 120.54769 * 98.41086 * 6 5 4 26 26 C 1.53826 * 114.94722 * 317.73583 * 25 6 5 27 27 S 1.79947 * 111.14062 * 316.95448 * 26 25 6 28 28 H 1.09000 * 109.47109 * 178.44225 * 1 2 3 29 29 H 1.08999 * 109.47211 * 298.44245 * 1 2 3 30 30 H 1.08997 * 109.47200 * 58.43818 * 1 2 3 31 31 H 1.09004 * 108.72082 * 306.91937 * 4 2 1 32 32 H 1.08997 * 108.72159 * 65.08260 * 4 2 1 33 33 H 1.08996 * 109.19932 * 158.98200 * 5 4 2 34 34 H 1.09003 * 109.47503 * 39.13917 * 5 4 2 35 35 H 1.08993 * 109.58674 * 246.20013 * 12 11 9 36 36 H 1.08994 * 109.58470 * 6.62821 * 12 11 9 37 37 H 1.09007 * 109.63702 * 294.85861 * 13 12 11 38 38 H 1.09006 * 109.45643 * 174.74198 * 13 12 11 39 39 H 1.09000 * 109.45959 * 58.53466 * 14 13 12 40 40 H 0.97008 * 119.99485 * 179.97438 * 18 17 15 41 41 H 1.09000 * 109.49792 * 301.41674 * 23 14 13 42 42 H 1.08998 * 109.52704 * 181.33106 * 23 14 13 43 43 H 1.08997 * 109.58443 * 353.36972 * 24 11 9 44 44 H 1.08989 * 109.58560 * 113.80070 * 24 11 9 45 45 H 1.08999 * 108.38867 * 79.15363 * 25 6 5 46 46 H 1.09000 * 108.38576 * 196.32036 * 25 6 5 47 47 H 1.09002 * 109.14469 * 77.38672 * 26 25 6 48 48 H 1.09002 * 109.14320 * 196.58753 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8801 1.0323 0.0000 4 6 2.0010 -0.6571 1.2136 5 6 3.5242 -0.5874 1.3880 6 7 4.1552 -1.6124 0.5852 7 6 4.2199 -2.8771 1.0463 8 8 3.6747 -3.1711 2.0899 9 6 4.9631 -3.9176 0.2726 10 8 4.4084 -4.5184 -0.6241 11 7 6.2509 -4.1846 0.5670 12 6 6.9617 -5.2790 -0.1082 13 6 8.2556 -4.7183 -0.7178 14 6 9.0682 -4.0221 0.3763 15 6 10.3561 -3.5025 -0.2088 16 1 10.5768 -2.4458 -0.1753 17 6 11.2528 -4.3760 -0.7866 18 7 10.9839 -5.6627 -0.8276 19 14 12.8495 -3.7320 -1.5111 20 1 13.9036 -3.7327 -0.4651 21 1 13.2693 -4.6040 -2.6374 22 1 12.6451 -2.3472 -2.0068 23 6 8.2610 -2.8550 0.9492 24 6 6.9688 -3.3909 1.5737 25 6 4.7186 -1.2883 -0.7267 26 6 3.8547 -0.3539 -1.5909 27 16 2.1187 -0.8214 -1.5163 28 1 -0.3633 -1.0273 -0.0279 29 1 -0.3633 0.4894 0.9036 30 1 -0.3633 0.5379 -0.8756 31 1 1.5271 -0.1843 2.0739 32 1 1.7024 -1.7049 1.1826 33 1 3.7724 -0.7439 2.4377 34 1 3.8817 0.3928 1.0723 35 1 7.2028 -6.0587 0.6142 36 1 6.3329 -5.6910 -0.8974 37 1 8.0106 -4.0011 -1.5012 38 1 8.8406 -5.5345 -1.1419 39 1 9.2918 -4.7338 1.1711 40 1 11.6146 -6.2773 -1.2344 41 1 8.0159 -2.1553 0.1501 42 1 8.8492 -2.3448 1.7119 43 1 6.3446 -2.5569 1.8944 44 1 7.2105 -4.0198 2.4304 45 1 5.6902 -0.8176 -0.5769 46 1 4.8724 -2.2183 -1.2740 47 1 3.9653 0.6692 -1.2314 48 1 4.1945 -0.4079 -2.6252 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117968622.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:25 Heat of formation + Delta-G solvation = -87.585720 kcal Electronic energy + Delta-G solvation = -29128.294441 eV Core-core repulsion = 25308.453957 eV Total energy + Delta-G solvation = -3819.840484 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.22441 -40.28307 -38.54756 -38.05845 -36.12338 -35.43714 -33.00090 -32.18052 -32.02260 -30.43874 -28.32308 -26.57599 -24.97944 -24.71505 -24.13965 -23.34813 -22.37687 -21.02546 -19.76481 -18.99153 -18.40383 -18.11845 -17.82155 -17.47701 -16.74703 -16.50419 -16.28058 -15.97525 -15.70892 -15.35790 -15.01358 -14.95675 -14.76224 -14.60722 -14.43256 -14.30708 -14.16414 -13.98399 -13.48668 -13.18500 -13.06133 -12.93337 -12.82014 -12.69284 -12.54956 -12.49560 -12.44800 -12.19024 -12.00557 -11.97814 -11.95838 -11.44977 -11.09653 -10.86480 -10.68752 -10.64657 -10.39360 -9.96693 -9.78402 -8.71599 -8.06124 -6.19348 0.67666 0.92446 0.99506 1.40763 1.43717 1.46305 1.54260 1.60508 2.22908 2.45791 3.00317 3.21754 3.46912 3.60188 3.80650 3.89671 3.92457 4.15178 4.20597 4.25046 4.32062 4.36182 4.43432 4.43923 4.47577 4.51870 4.57972 4.62726 4.66995 4.76929 4.79489 4.85507 4.90429 4.90904 5.08743 5.15305 5.20725 5.22384 5.36407 5.36999 5.46350 5.66341 5.84334 5.97791 6.08684 6.15402 6.38402 6.59913 6.68209 6.92169 7.49207 8.97703 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019604 B = 0.003003 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.908687 B = 9321.089118 C = 9729.186355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.035 4.035 3 H 0.112 0.888 4 C -0.134 4.134 5 C 0.105 3.895 6 N -0.573 5.573 7 C 0.529 3.471 8 O -0.537 6.537 9 C 0.507 3.493 10 O -0.556 6.556 11 N -0.580 5.580 12 C 0.116 3.884 13 C -0.108 4.108 14 C 0.044 3.956 15 C -0.527 4.527 16 H 0.057 0.943 17 C 0.013 3.987 18 N -0.916 5.916 19 Si 0.949 3.051 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.267 1.267 23 C -0.109 4.109 24 C 0.111 3.889 25 C 0.097 3.903 26 C -0.084 4.084 27 S -0.308 6.308 28 H 0.044 0.956 29 H 0.093 0.907 30 H 0.069 0.931 31 H 0.109 0.891 32 H 0.044 0.956 33 H 0.090 0.910 34 H 0.118 0.882 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.033 0.967 38 H 0.076 0.924 39 H 0.002 0.998 40 H 0.260 0.740 41 H 0.059 0.941 42 H 0.077 0.923 43 H 0.089 0.911 44 H 0.076 0.924 45 H 0.103 0.897 46 H 0.060 0.940 47 H 0.121 0.879 48 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.952 16.518 3.405 23.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.163 4.163 3 H 0.130 0.870 4 C -0.174 4.174 5 C -0.017 4.017 6 N -0.306 5.306 7 C 0.312 3.688 8 O -0.414 6.414 9 C 0.290 3.710 10 O -0.435 6.435 11 N -0.313 5.313 12 C -0.005 4.005 13 C -0.146 4.146 14 C 0.026 3.974 15 C -0.565 4.565 16 H 0.076 0.924 17 C -0.185 4.185 18 N -0.556 5.556 19 Si 0.775 3.225 20 H -0.204 1.204 21 H -0.216 1.216 22 H -0.191 1.191 23 C -0.147 4.147 24 C -0.010 4.010 25 C -0.028 4.028 26 C -0.233 4.233 27 S -0.081 6.081 28 H 0.063 0.937 29 H 0.112 0.888 30 H 0.088 0.912 31 H 0.128 0.872 32 H 0.063 0.937 33 H 0.108 0.892 34 H 0.136 0.864 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.052 0.948 38 H 0.094 0.906 39 H 0.021 0.979 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.096 0.904 43 H 0.107 0.893 44 H 0.094 0.906 45 H 0.121 0.879 46 H 0.079 0.921 47 H 0.139 0.861 48 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -17.014 15.287 2.706 23.032 hybrid contribution 1.739 0.040 0.098 1.743 sum -15.275 15.327 2.804 21.819 Atomic orbital electron populations 1.21684 0.91110 1.02294 1.03971 1.21962 1.00337 1.01563 0.92398 0.86973 1.20993 0.96330 1.01463 0.98640 1.21652 0.92133 0.91302 0.96621 1.47430 1.57064 1.07091 1.19008 1.19984 0.80841 0.83254 0.84762 1.90758 1.47013 1.79802 1.23814 1.20519 0.82501 0.84621 0.83362 1.90763 1.68109 1.53412 1.31202 1.48324 1.09426 1.33479 1.40051 1.21877 0.93738 0.88159 0.96772 1.21844 0.93040 1.00949 0.98812 1.18625 0.92594 0.92904 0.93306 1.21538 1.03511 0.93837 1.37604 0.92442 1.25689 1.01128 0.95115 0.96591 1.69974 1.36932 1.02881 1.45815 0.85697 0.80419 0.78428 0.77934 1.20437 1.21556 1.19120 1.21842 0.94072 0.98635 1.00127 1.21980 0.94076 0.94846 0.90142 1.21974 0.97434 1.00879 0.82484 1.23698 0.92336 1.02600 1.04672 1.87300 1.11329 1.73533 1.35915 0.93686 0.88808 0.91184 0.87245 0.93692 0.89201 0.86362 0.91414 0.90688 0.94849 0.90587 0.97943 0.93125 0.92190 0.90418 0.89319 0.90579 0.87930 0.92129 0.86095 0.85397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.67 9.06 71.98 0.65 -1.02 16 2 C -0.03 -0.48 2.63 28.40 0.07 -0.41 16 3 H 0.11 0.99 8.11 -2.39 -0.02 0.97 16 4 C -0.13 -2.13 4.54 28.56 0.13 -2.00 16 5 C 0.10 1.64 5.16 86.88 0.45 2.09 16 6 N -0.57 -13.06 2.42 -825.61 -1.99 -15.06 16 7 C 0.53 16.68 5.16 87.27 0.45 17.13 16 8 O -0.54 -19.12 16.45 -3.26 -0.05 -19.17 16 9 C 0.51 18.57 5.65 87.27 0.49 19.06 16 10 O -0.56 -23.84 16.13 -3.25 -0.05 -23.89 16 11 N -0.58 -20.60 2.97 -819.66 -2.43 -23.03 16 12 C 0.12 4.57 6.47 86.51 0.56 5.13 16 13 C -0.11 -4.80 5.17 30.82 0.16 -4.65 16 14 C 0.04 2.00 2.06 -11.52 -0.02 1.97 16 15 C -0.53 -26.60 8.56 25.60 0.22 -26.39 16 16 H 0.06 2.81 7.74 -2.91 -0.02 2.79 16 17 C 0.01 0.70 5.30 84.66 0.45 1.15 16 18 N -0.92 -50.44 11.30 21.45 0.24 -50.20 16 19 Si 0.95 41.49 29.54 68.60 2.03 43.52 16 20 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 21 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 22 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 23 C -0.11 -3.76 5.30 30.67 0.16 -3.60 16 24 C 0.11 3.44 6.32 86.36 0.55 3.98 16 25 C 0.10 1.99 5.86 86.68 0.51 2.50 16 26 C -0.08 -1.31 5.90 72.26 0.43 -0.88 16 27 S -0.31 -6.47 20.95 -56.49 -1.18 -7.65 16 28 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.09 0.76 8.06 -2.39 -0.02 0.74 16 30 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.11 1.18 8.00 -2.38 -0.02 1.16 16 32 H 0.04 1.09 7.51 -2.39 -0.02 1.07 16 33 H 0.09 1.47 7.71 -2.39 -0.02 1.45 16 34 H 0.12 1.03 7.51 -2.39 -0.02 1.01 16 35 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 36 H 0.07 3.02 7.00 -2.39 -0.02 3.00 16 37 H 0.03 1.49 8.14 -2.38 -0.02 1.47 16 38 H 0.08 3.89 6.03 -2.38 -0.01 3.87 16 39 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 40 H 0.26 13.78 8.31 -92.70 -0.77 13.01 16 41 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 43 H 0.09 2.33 6.37 -2.39 -0.02 2.32 16 44 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 45 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 46 H 0.06 1.67 6.10 -2.39 -0.01 1.66 16 47 H 0.12 1.10 7.91 -2.47 -0.02 1.08 16 48 H 0.13 1.84 8.14 -2.48 -0.02 1.82 16 Total: -1.00 -67.82 381.98 2.75 -65.07 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 0.94 Total: 16.33 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: 5.25 Total: 14.08 kcal Atomic # 7 Polarization: -84.11 SS G_CDS: -4.18 Total: -88.29 kcal Atomic # 8 Polarization: -42.96 SS G_CDS: -0.11 Total: -43.06 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Atomic # 16 Polarization: -6.47 SS G_CDS: -1.18 Total: -7.65 kcal Total: -67.82 2.75 -65.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117968622.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.511 kcal (2) G-P(sol) polarization free energy of solvation -67.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds