Wall clock time and date at job start Sat Apr 11 2020 06:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 108.60432 * 2 1 4 4 C 1.54275 * 108.74135 * 241.82164 * 2 1 3 5 5 C 1.54968 * 112.50929 * 198.08505 * 4 2 1 6 6 S 1.79017 * 112.92326 * 318.76121 * 5 4 2 7 7 C 1.82674 * 101.71460 * 88.84998 * 6 5 4 8 8 C 1.44459 * 111.61496 * 284.31321 * 7 6 5 9 9 N 1.43338 * 108.74072 * 118.17243 * 2 1 3 10 10 C 1.34777 * 121.03294 * 42.92367 * 9 2 1 11 11 O 1.21343 * 120.00352 * 5.22184 * 10 9 2 12 12 C 1.49456 * 119.99830 * 185.22084 * 10 9 2 13 13 O 1.21345 * 120.00171 * 275.27305 * 12 10 9 14 14 N 1.34781 * 119.99886 * 95.26695 * 12 10 9 15 15 C 1.46922 * 120.62886 * 354.57139 * 14 12 10 16 16 C 1.52764 * 109.00591 * 233.57857 * 15 14 12 17 17 C 1.53039 * 109.38328 * 305.58940 * 16 15 14 18 18 C 1.53047 * 109.53823 * 61.23527 * 17 16 15 19 19 H 1.09004 * 109.49274 * 58.59283 * 18 17 16 20 20 C 1.50701 * 109.52222 * 178.66791 * 18 17 16 21 21 H 1.08002 * 120.00117 * 5.42329 * 20 18 17 22 22 C 1.37878 * 120.00001 * 185.42147 * 20 18 17 23 23 N 1.31515 * 119.99861 * 5.36598 * 22 20 18 24 24 Si 1.86796 * 120.00217 * 185.36104 * 22 20 18 25 25 H 1.48507 * 109.46704 * 94.99935 * 24 22 20 26 26 H 1.48493 * 109.47252 * 214.99835 * 24 22 20 27 27 H 1.48497 * 109.47210 * 335.00299 * 24 22 20 28 28 C 1.46925 * 120.63023 * 174.84259 * 14 12 10 29 29 H 1.08997 * 109.47045 * 170.78581 * 1 2 3 30 30 H 1.09007 * 109.47193 * 290.78900 * 1 2 3 31 31 H 1.09000 * 109.46775 * 50.77816 * 1 2 3 32 32 H 1.09008 * 108.87549 * 318.86365 * 4 2 1 33 33 H 1.08996 * 108.87701 * 77.30175 * 4 2 1 34 34 H 1.08995 * 108.79590 * 79.64712 * 5 4 2 35 35 H 1.09004 * 108.79332 * 197.87466 * 5 4 2 36 36 H 1.09004 * 109.05099 * 163.76626 * 7 6 5 37 37 H 1.08999 * 108.99430 * 44.82842 * 7 6 5 38 38 H 1.08996 * 109.10153 * 299.67562 * 8 7 6 39 39 H 1.08993 * 109.10363 * 180.64038 * 8 7 6 40 40 H 1.08999 * 109.59078 * 353.40602 * 15 14 12 41 41 H 1.08995 * 109.59324 * 113.84382 * 15 14 12 42 42 H 1.08995 * 109.56775 * 185.55039 * 16 15 14 43 43 H 1.09002 * 109.38458 * 65.51130 * 16 15 14 44 44 H 1.08999 * 109.45891 * 301.21884 * 17 16 15 45 45 H 1.09000 * 109.46357 * 181.25810 * 17 16 15 46 46 H 0.96992 * 120.00179 * 179.97438 * 23 22 20 47 47 H 1.09000 * 109.58695 * 246.16282 * 28 14 12 48 48 H 1.09003 * 109.58531 * 6.58547 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8777 1.0331 0.0000 4 6 2.0257 -0.6899 -1.2878 5 6 3.5050 -1.1405 -1.1877 6 16 4.5494 0.0695 -0.3816 7 6 4.3985 -0.4198 1.3719 8 6 3.1285 -0.0162 1.9296 9 7 1.9905 -0.6409 1.1966 10 6 1.4129 -1.7731 1.6448 11 8 0.5524 -2.3176 0.9850 12 6 1.8324 -2.3581 2.9546 13 8 2.7984 -3.0902 3.0106 14 7 1.1377 -2.0722 4.0737 15 6 0.0401 -1.0960 4.0445 16 6 0.2849 -0.0398 5.1207 17 6 0.4783 -0.7285 6.4736 18 6 1.7001 -1.6480 6.4098 19 1 2.5821 -1.0634 6.1481 20 6 1.9095 -2.3010 7.7518 21 1 1.1898 -2.1517 8.5432 22 6 3.0197 -3.0891 7.9693 23 7 3.9486 -3.1863 7.0434 24 14 3.2046 -4.0186 9.5789 25 1 2.6931 -5.4029 9.4127 26 1 4.6383 -4.0635 9.9628 27 1 2.4291 -3.3287 10.6409 28 6 1.4676 -2.7265 5.3472 29 1 -0.3633 -1.0144 -0.1646 30 1 -0.3634 0.3648 0.9608 31 1 -0.3633 0.6498 -0.7962 32 1 1.4033 -1.5636 -1.4818 33 1 1.9243 0.0049 -2.1215 34 1 3.5508 -2.0735 -0.6262 35 1 3.8864 -1.3193 -2.1931 36 1 5.2018 0.0470 1.9420 37 1 4.4921 -1.5031 1.4473 38 1 3.0402 1.0684 1.8676 39 1 3.0867 -0.3172 2.9763 40 1 0.0030 -0.6169 3.0661 41 1 -0.9047 -1.6023 4.2418 42 1 -0.5713 0.6326 5.1738 43 1 1.1801 0.5300 4.8713 44 1 -0.4075 -1.3176 6.7110 45 1 0.6309 0.0250 7.2462 46 1 4.7299 -3.7404 7.1965 47 1 0.6415 -3.3687 5.6528 48 1 2.3721 -3.3230 5.2279 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118448646.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:33 Heat of formation + Delta-G solvation = -64.852895 kcal Electronic energy + Delta-G solvation = -29928.862127 eV Core-core repulsion = 26110.007412 eV Total energy + Delta-G solvation = -3818.854715 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.98907 -38.95942 -37.00089 -36.74535 -34.19424 -33.46309 -31.94129 -31.51804 -30.08011 -29.61485 -26.16164 -25.13554 -24.52183 -23.53455 -23.09101 -21.99921 -21.16577 -19.42325 -18.21602 -17.59091 -16.60863 -16.53137 -16.28155 -16.14920 -15.55033 -15.34206 -14.67181 -14.54476 -14.30419 -14.26914 -13.89821 -13.79516 -13.55057 -13.43762 -13.13180 -12.95182 -12.75587 -12.36711 -12.29996 -12.07317 -12.03173 -11.76824 -11.51163 -11.30122 -11.21134 -11.09891 -11.01184 -10.72791 -10.59283 -10.46276 -10.36547 -10.02951 -9.93076 -9.32326 -9.19051 -9.01925 -8.89651 -8.53366 -8.02577 -7.84801 -6.10818 -4.17055 1.60350 2.25493 2.30101 2.45865 2.93923 3.26119 3.34591 3.36089 3.53983 4.27631 4.37166 4.55149 4.63796 4.75874 4.81354 5.03100 5.07137 5.13018 5.18689 5.21801 5.28429 5.34997 5.49355 5.54131 5.54252 5.56642 5.66662 5.74815 5.76438 5.84773 5.90882 6.02244 6.11623 6.18237 6.42536 6.48358 6.50178 6.69593 6.82466 6.90011 6.98020 7.06771 7.45410 7.71132 7.81079 7.89169 7.91951 8.23079 8.40414 8.87516 9.48845 10.96668 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016634 B = 0.003678 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.900207 B = 7610.293084 C = 8370.747966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.142 3.858 3 H 0.095 0.905 4 C -0.123 4.123 5 C -0.094 4.094 6 S -0.245 6.245 7 C -0.103 4.103 8 C 0.109 3.891 9 N -0.595 5.595 10 C 0.523 3.477 11 O -0.510 6.510 12 C 0.503 3.497 13 O -0.513 6.513 14 N -0.585 5.585 15 C 0.108 3.892 16 C -0.132 4.132 17 C -0.112 4.112 18 C 0.041 3.959 19 H 0.036 0.964 20 C -0.522 4.522 21 H 0.059 0.941 22 C 0.065 3.935 23 N -0.879 5.879 24 Si 0.890 3.110 25 H -0.280 1.280 26 H -0.286 1.286 27 H -0.274 1.274 28 C 0.113 3.887 29 H 0.087 0.913 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.122 0.878 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.051 0.949 45 H 0.055 0.945 46 H 0.264 0.736 47 H 0.050 0.950 48 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.294 9.861 -14.165 17.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.038 3.962 3 H 0.113 0.887 4 C -0.164 4.164 5 C -0.242 4.242 6 S -0.018 6.018 7 C -0.251 4.251 8 C -0.015 4.015 9 N -0.331 5.331 10 C 0.307 3.693 11 O -0.385 6.385 12 C 0.284 3.716 13 O -0.388 6.388 14 N -0.318 5.318 15 C -0.015 4.015 16 C -0.170 4.170 17 C -0.149 4.149 18 C 0.022 3.978 19 H 0.054 0.946 20 C -0.561 4.561 21 H 0.078 0.922 22 C -0.138 4.138 23 N -0.516 5.516 24 Si 0.718 3.282 25 H -0.206 1.206 26 H -0.212 1.212 27 H -0.198 1.198 28 C -0.006 4.006 29 H 0.106 0.894 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.117 0.883 36 H 0.140 0.860 37 H 0.115 0.885 38 H 0.112 0.888 39 H 0.116 0.884 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.069 0.931 45 H 0.074 0.926 46 H 0.074 0.926 47 H 0.069 0.931 48 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -3.458 9.879 -14.970 18.266 hybrid contribution -0.484 -1.608 1.299 2.123 sum -3.942 8.271 -13.672 16.458 Atomic orbital electron populations 1.22378 0.94103 1.04626 1.01925 1.20779 0.95071 0.96807 0.83584 0.88699 1.22658 0.94211 1.01705 0.97841 1.23375 0.97138 0.99982 1.03735 1.86480 1.62925 1.47039 1.05339 1.22588 1.01373 1.06460 0.94696 1.20666 0.84528 0.99273 0.97019 1.48041 1.34410 1.24894 1.25757 1.20693 0.81222 0.79932 0.87494 1.90686 1.31050 1.58812 1.57919 1.20071 0.83976 0.83253 0.84309 1.90825 1.25737 1.37614 1.84641 1.48567 1.32736 1.41041 1.09477 1.21630 0.90172 0.90516 0.99191 1.21869 1.01297 0.97090 0.96718 1.21649 1.00302 0.98931 0.94050 1.18969 0.92859 0.92169 0.93782 0.94556 1.21045 1.07467 1.30601 0.96974 0.92239 1.25036 0.95471 0.96576 0.96719 1.69932 1.09335 1.38638 1.33723 0.86602 0.77383 0.80387 0.83818 1.20620 1.21188 1.19829 1.22423 1.01810 0.97393 0.78998 0.89391 0.92457 0.92035 0.90501 0.90506 0.89950 0.88270 0.85983 0.88473 0.88774 0.88367 0.91534 0.91339 0.91784 0.92034 0.93055 0.92597 0.92639 0.93126 0.87072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.80 8.30 37.16 0.31 -1.49 16 2 C 0.14 1.51 2.13 -68.93 -0.15 1.36 16 3 H 0.09 0.88 7.45 -51.93 -0.39 0.49 16 4 C -0.12 -1.25 5.55 -25.02 -0.14 -1.39 16 5 C -0.09 -1.02 5.83 38.20 0.22 -0.80 16 6 S -0.25 -2.74 21.29 -107.50 -2.29 -5.03 16 7 C -0.10 -1.22 5.89 33.18 0.20 -1.02 16 8 C 0.11 1.28 5.33 -6.59 -0.04 1.25 16 9 N -0.60 -7.64 2.14 -170.66 -0.37 -8.00 16 10 C 0.52 8.59 5.05 -11.58 -0.06 8.53 16 11 O -0.51 -9.13 14.40 5.50 0.08 -9.05 16 12 C 0.50 9.85 5.66 -11.58 -0.07 9.79 16 13 O -0.51 -11.90 16.51 5.50 0.09 -11.81 16 14 N -0.58 -11.14 2.98 -173.55 -0.52 -11.66 16 15 C 0.11 1.65 6.29 -3.93 -0.02 1.62 16 16 C -0.13 -1.92 6.06 -26.83 -0.16 -2.09 16 17 C -0.11 -2.04 5.11 -26.69 -0.14 -2.18 16 18 C 0.04 0.95 2.12 -91.65 -0.19 0.75 16 19 H 0.04 0.92 8.12 -51.93 -0.42 0.50 16 20 C -0.52 -13.42 8.49 -34.44 -0.29 -13.71 16 21 H 0.06 1.51 7.75 -52.49 -0.41 1.10 16 22 C 0.07 1.74 5.29 -17.82 -0.09 1.64 16 23 N -0.88 -24.51 12.02 55.43 0.67 -23.84 16 24 Si 0.89 20.56 29.54 -169.99 -5.02 15.54 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 27 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 28 C 0.11 2.57 5.49 -3.72 -0.02 2.55 16 29 H 0.09 1.13 5.69 -51.93 -0.30 0.83 16 30 H 0.06 0.61 7.96 -51.93 -0.41 0.19 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.88 7.82 -51.92 -0.41 0.47 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.08 1.07 7.91 -51.47 -0.41 0.67 16 35 H 0.10 0.94 8.14 -51.46 -0.42 0.52 16 36 H 0.12 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.10 1.40 8.01 -51.93 -0.42 0.98 16 38 H 0.09 0.88 7.79 -51.93 -0.40 0.47 16 39 H 0.10 1.37 6.72 -51.93 -0.35 1.02 16 40 H 0.07 0.91 6.19 -51.93 -0.32 0.59 16 41 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 47 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 48 H 0.11 2.95 5.75 -51.93 -0.30 2.65 16 LS Contribution 379.70 15.07 5.72 5.72 Total: -1.00 -29.64 379.70 -10.16 -39.80 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -7.89 Total: 3.52 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: -0.64 Total: 4.81 kcal Atomic # 7 Polarization: -43.29 SS G_CDS: -0.22 Total: -43.50 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: 0.17 Total: -20.87 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 16 Polarization: -2.74 SS G_CDS: -2.29 Total: -5.03 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.64 -10.16 -39.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118448646.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.055 kcal (2) G-P(sol) polarization free energy of solvation -29.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds