Wall clock time and date at job start Sat Apr 11 2020 06:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 108.60432 * 2 1 4 4 C 1.54275 * 108.74135 * 241.82164 * 2 1 3 5 5 C 1.54968 * 112.50929 * 198.08505 * 4 2 1 6 6 S 1.79017 * 112.92326 * 318.76121 * 5 4 2 7 7 C 1.82674 * 101.71460 * 88.84998 * 6 5 4 8 8 C 1.44459 * 111.61496 * 284.31321 * 7 6 5 9 9 N 1.43338 * 108.74072 * 118.17243 * 2 1 3 10 10 C 1.34777 * 121.03294 * 42.92367 * 9 2 1 11 11 O 1.21343 * 120.00352 * 5.22184 * 10 9 2 12 12 C 1.49456 * 119.99830 * 185.22084 * 10 9 2 13 13 O 1.21345 * 120.00171 * 275.27305 * 12 10 9 14 14 N 1.34781 * 119.99886 * 95.26695 * 12 10 9 15 15 C 1.46922 * 120.62886 * 354.57139 * 14 12 10 16 16 C 1.52764 * 109.00591 * 233.57857 * 15 14 12 17 17 C 1.53039 * 109.38328 * 305.58940 * 16 15 14 18 18 C 1.53047 * 109.53823 * 61.23527 * 17 16 15 19 19 H 1.09004 * 109.49274 * 58.59283 * 18 17 16 20 20 C 1.50701 * 109.52222 * 178.66791 * 18 17 16 21 21 H 1.08002 * 120.00117 * 5.42329 * 20 18 17 22 22 C 1.37878 * 120.00001 * 185.42147 * 20 18 17 23 23 N 1.31515 * 119.99861 * 5.36598 * 22 20 18 24 24 Si 1.86796 * 120.00217 * 185.36104 * 22 20 18 25 25 H 1.48507 * 109.46704 * 94.99935 * 24 22 20 26 26 H 1.48493 * 109.47252 * 214.99835 * 24 22 20 27 27 H 1.48497 * 109.47210 * 335.00299 * 24 22 20 28 28 C 1.46925 * 120.63023 * 174.84259 * 14 12 10 29 29 H 1.08997 * 109.47045 * 170.78581 * 1 2 3 30 30 H 1.09007 * 109.47193 * 290.78900 * 1 2 3 31 31 H 1.09000 * 109.46775 * 50.77816 * 1 2 3 32 32 H 1.09008 * 108.87549 * 318.86365 * 4 2 1 33 33 H 1.08996 * 108.87701 * 77.30175 * 4 2 1 34 34 H 1.08995 * 108.79590 * 79.64712 * 5 4 2 35 35 H 1.09004 * 108.79332 * 197.87466 * 5 4 2 36 36 H 1.09004 * 109.05099 * 163.76626 * 7 6 5 37 37 H 1.08999 * 108.99430 * 44.82842 * 7 6 5 38 38 H 1.08996 * 109.10153 * 299.67562 * 8 7 6 39 39 H 1.08993 * 109.10363 * 180.64038 * 8 7 6 40 40 H 1.08999 * 109.59078 * 353.40602 * 15 14 12 41 41 H 1.08995 * 109.59324 * 113.84382 * 15 14 12 42 42 H 1.08995 * 109.56775 * 185.55039 * 16 15 14 43 43 H 1.09002 * 109.38458 * 65.51130 * 16 15 14 44 44 H 1.08999 * 109.45891 * 301.21884 * 17 16 15 45 45 H 1.09000 * 109.46357 * 181.25810 * 17 16 15 46 46 H 0.96992 * 120.00179 * 179.97438 * 23 22 20 47 47 H 1.09000 * 109.58695 * 246.16282 * 28 14 12 48 48 H 1.09003 * 109.58531 * 6.58547 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8777 1.0331 0.0000 4 6 2.0257 -0.6899 -1.2878 5 6 3.5050 -1.1405 -1.1877 6 16 4.5494 0.0695 -0.3816 7 6 4.3985 -0.4198 1.3719 8 6 3.1285 -0.0162 1.9296 9 7 1.9905 -0.6409 1.1966 10 6 1.4129 -1.7731 1.6448 11 8 0.5524 -2.3176 0.9850 12 6 1.8324 -2.3581 2.9546 13 8 2.7984 -3.0902 3.0106 14 7 1.1377 -2.0722 4.0737 15 6 0.0401 -1.0960 4.0445 16 6 0.2849 -0.0398 5.1207 17 6 0.4783 -0.7285 6.4736 18 6 1.7001 -1.6480 6.4098 19 1 2.5821 -1.0634 6.1481 20 6 1.9095 -2.3010 7.7518 21 1 1.1898 -2.1517 8.5432 22 6 3.0197 -3.0891 7.9693 23 7 3.9486 -3.1863 7.0434 24 14 3.2046 -4.0186 9.5789 25 1 2.6931 -5.4029 9.4127 26 1 4.6383 -4.0635 9.9628 27 1 2.4291 -3.3287 10.6409 28 6 1.4676 -2.7265 5.3472 29 1 -0.3633 -1.0144 -0.1646 30 1 -0.3634 0.3648 0.9608 31 1 -0.3633 0.6498 -0.7962 32 1 1.4033 -1.5636 -1.4818 33 1 1.9243 0.0049 -2.1215 34 1 3.5508 -2.0735 -0.6262 35 1 3.8864 -1.3193 -2.1931 36 1 5.2018 0.0470 1.9420 37 1 4.4921 -1.5031 1.4473 38 1 3.0402 1.0684 1.8676 39 1 3.0867 -0.3172 2.9763 40 1 0.0030 -0.6169 3.0661 41 1 -0.9047 -1.6023 4.2418 42 1 -0.5713 0.6326 5.1738 43 1 1.1801 0.5300 4.8713 44 1 -0.4075 -1.3176 6.7110 45 1 0.6309 0.0250 7.2462 46 1 4.7299 -3.7404 7.1965 47 1 0.6415 -3.3687 5.6528 48 1 2.3721 -3.3230 5.2279 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118448646.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:32 Heat of formation + Delta-G solvation = -81.681079 kcal Electronic energy + Delta-G solvation = -29929.591852 eV Core-core repulsion = 26110.007412 eV Total energy + Delta-G solvation = -3819.584440 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.29946 -40.37718 -38.51811 -38.01288 -35.36402 -35.07485 -33.55287 -32.50965 -31.74607 -30.60836 -27.72553 -26.84642 -25.61039 -24.62434 -24.19317 -23.54543 -22.38390 -20.97527 -19.55142 -18.91886 -18.27792 -17.80333 -17.64112 -17.29652 -16.75149 -16.50768 -16.42928 -15.79168 -15.59040 -15.36686 -15.28647 -15.09672 -14.84243 -14.60198 -14.47834 -14.38078 -14.00885 -13.92069 -13.65944 -13.37444 -12.95115 -12.90164 -12.81125 -12.62651 -12.51939 -12.37991 -12.25998 -12.22458 -12.11493 -11.91750 -11.78583 -11.65994 -11.12259 -10.90145 -10.87849 -10.54634 -10.41363 -10.06673 -9.66148 -8.74808 -8.14577 -6.26997 0.66629 0.92409 1.04465 1.40462 1.41728 1.42979 1.49553 1.52287 2.22074 2.42416 2.99513 3.17591 3.66437 3.73042 3.81759 3.88348 3.92480 4.06603 4.07489 4.13382 4.25896 4.31267 4.45732 4.49741 4.55858 4.64918 4.68927 4.72659 4.72787 4.75747 4.81028 4.84719 4.94390 5.03656 5.04972 5.14215 5.21381 5.24806 5.28502 5.40467 5.55882 5.59432 5.84297 5.91540 5.92106 6.26561 6.30640 6.65903 6.79782 6.88171 7.42681 8.91677 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016634 B = 0.003678 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.900207 B = 7610.293084 C = 8370.747966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.134 3.866 3 H 0.123 0.877 4 C -0.119 4.119 5 C -0.096 4.096 6 S -0.222 6.222 7 C -0.105 4.105 8 C 0.109 3.891 9 N -0.581 5.581 10 C 0.532 3.468 11 O -0.527 6.527 12 C 0.495 3.505 13 O -0.562 6.562 14 N -0.584 5.584 15 C 0.104 3.896 16 C -0.121 4.121 17 C -0.106 4.106 18 C 0.042 3.958 19 H 0.002 0.998 20 C -0.534 4.534 21 H 0.063 0.937 22 C 0.016 3.984 23 N -0.913 5.913 24 Si 0.950 3.050 25 H -0.280 1.280 26 H -0.287 1.287 27 H -0.261 1.261 28 C 0.127 3.873 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.089 0.911 32 H 0.061 0.939 33 H 0.106 0.894 34 H 0.052 0.948 35 H 0.116 0.884 36 H 0.135 0.865 37 H 0.062 0.938 38 H 0.132 0.868 39 H 0.073 0.927 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.107 0.893 43 H 0.062 0.938 44 H 0.056 0.944 45 H 0.059 0.941 46 H 0.259 0.741 47 H 0.046 0.954 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.990 12.749 -15.233 20.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.030 3.970 3 H 0.141 0.859 4 C -0.160 4.160 5 C -0.245 4.245 6 S 0.005 5.995 7 C -0.253 4.253 8 C -0.014 4.014 9 N -0.315 5.315 10 C 0.315 3.685 11 O -0.403 6.403 12 C 0.278 3.722 13 O -0.441 6.441 14 N -0.317 5.317 15 C -0.018 4.018 16 C -0.159 4.159 17 C -0.144 4.144 18 C 0.023 3.977 19 H 0.020 0.980 20 C -0.572 4.572 21 H 0.081 0.919 22 C -0.184 4.184 23 N -0.552 5.552 24 Si 0.776 3.224 25 H -0.206 1.206 26 H -0.213 1.213 27 H -0.185 1.185 28 C 0.005 3.995 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.108 0.892 32 H 0.080 0.920 33 H 0.125 0.875 34 H 0.071 0.929 35 H 0.134 0.866 36 H 0.153 0.847 37 H 0.081 0.919 38 H 0.150 0.850 39 H 0.091 0.909 40 H 0.106 0.894 41 H 0.099 0.901 42 H 0.125 0.875 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.078 0.922 46 H 0.068 0.932 47 H 0.065 0.935 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.184 12.824 -16.046 21.185 hybrid contribution 0.073 -2.486 1.589 2.952 sum -5.111 10.338 -14.457 18.493 Atomic orbital electron populations 1.22313 0.93480 1.03646 1.03057 1.21139 0.95642 0.97745 0.82425 0.85901 1.22651 0.92939 1.01812 0.98548 1.23422 0.98154 0.98785 1.04162 1.86368 1.63152 1.46175 1.03775 1.22527 1.02039 1.04415 0.96318 1.20794 0.84009 1.01129 0.95441 1.48049 1.33739 1.23366 1.26317 1.19980 0.81543 0.80925 0.86035 1.90699 1.32166 1.59622 1.57849 1.20768 0.83151 0.82629 0.85640 1.90791 1.27915 1.39766 1.85644 1.48565 1.33545 1.41362 1.08217 1.21936 0.89074 0.89968 1.00772 1.21819 1.03253 0.96959 0.93824 1.21536 0.97871 0.98285 0.96685 1.18880 0.93852 0.92463 0.92509 0.97970 1.21488 1.07153 1.30231 0.98324 0.91922 1.25796 0.95430 0.97578 0.99637 1.70092 1.09845 1.39612 1.35614 0.85663 0.77189 0.79044 0.80531 1.20645 1.21338 1.18511 1.21886 0.99554 0.97104 0.80951 0.92006 0.92344 0.89207 0.91989 0.87530 0.92889 0.86618 0.84704 0.91918 0.84964 0.90902 0.89362 0.90081 0.87453 0.91926 0.92517 0.92245 0.93160 0.93532 0.91612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.96 8.30 71.98 0.60 -2.36 16 2 C 0.13 2.44 2.13 46.01 0.10 2.54 16 3 H 0.12 1.67 7.45 -2.39 -0.02 1.65 16 4 C -0.12 -2.12 5.55 31.70 0.18 -1.95 16 5 C -0.10 -1.98 5.83 72.66 0.42 -1.56 16 6 S -0.22 -4.53 21.29 -56.49 -1.20 -5.74 16 7 C -0.10 -2.47 5.89 69.41 0.41 -2.06 16 8 C 0.11 2.47 5.33 83.30 0.44 2.91 16 9 N -0.58 -14.19 2.14 -812.21 -1.74 -15.93 16 10 C 0.53 17.56 5.05 87.27 0.44 18.00 16 11 O -0.53 -18.87 14.40 -3.23 -0.05 -18.92 16 12 C 0.50 20.29 5.66 87.27 0.49 20.78 16 13 O -0.56 -28.18 16.51 -3.23 -0.05 -28.23 16 14 N -0.58 -22.80 2.98 -821.34 -2.45 -25.25 16 15 C 0.10 2.97 6.29 86.22 0.54 3.52 16 16 C -0.12 -3.19 6.06 30.53 0.19 -3.01 16 17 C -0.11 -3.74 5.11 30.62 0.16 -3.58 16 18 C 0.04 1.98 2.12 -11.46 -0.02 1.96 16 19 H 0.00 0.11 8.12 -2.38 -0.02 0.09 16 20 C -0.53 -27.98 8.49 25.60 0.22 -27.77 16 21 H 0.06 3.17 7.75 -2.91 -0.02 3.15 16 22 C 0.02 0.85 5.29 84.65 0.45 1.30 16 23 N -0.91 -53.53 12.02 21.45 0.26 -53.27 16 24 Si 0.95 43.08 29.54 68.60 2.03 45.11 16 25 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 26 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 27 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 28 C 0.13 6.01 5.49 86.36 0.47 6.48 16 29 H 0.06 1.47 5.69 -2.39 -0.01 1.46 16 30 H 0.06 1.02 7.96 -2.38 -0.02 1.00 16 31 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.06 1.33 7.82 -2.38 -0.02 1.31 16 33 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.05 1.42 7.91 -2.69 -0.02 1.39 16 35 H 0.12 1.98 8.14 -2.68 -0.02 1.96 16 36 H 0.14 2.80 8.14 -2.39 -0.02 2.78 16 37 H 0.06 1.93 8.01 -2.39 -0.02 1.91 16 38 H 0.13 2.02 7.79 -2.39 -0.02 2.01 16 39 H 0.07 2.07 6.72 -2.39 -0.02 2.06 16 40 H 0.09 2.17 6.19 -2.39 -0.01 2.16 16 41 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 46 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 47 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 48 H 0.07 3.75 5.75 -2.39 -0.01 3.74 16 Total: -1.00 -69.67 379.70 2.82 -66.85 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: 0.94 Total: 20.18 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: 5.08 Total: 15.20 kcal Atomic # 7 Polarization: -90.52 SS G_CDS: -3.93 Total: -94.45 kcal Atomic # 8 Polarization: -47.05 SS G_CDS: -0.10 Total: -47.15 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Atomic # 16 Polarization: -4.53 SS G_CDS: -1.20 Total: -5.74 kcal Total: -69.67 2.82 -66.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118448646.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.832 kcal (2) G-P(sol) polarization free energy of solvation -69.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds