Wall clock time and date at job start Sat Apr 11 2020 06:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.03678 * 2 1 4 4 C 1.44337 * 109.09570 * 119.05275 * 2 1 3 5 5 C 1.53486 * 112.95738 * 179.86634 * 4 2 1 6 6 S 1.78687 * 107.07097 * 277.78211 * 5 4 2 7 7 C 1.83144 * 105.76594 * 92.55451 * 6 5 4 8 8 C 1.56199 * 107.95395 * 321.71235 * 7 6 5 9 9 N 1.42786 * 113.95543 * 321.00309 * 8 7 6 10 10 C 1.34778 * 121.56331 * 284.29841 * 9 8 7 11 11 O 1.21354 * 119.99640 * 183.19485 * 10 9 8 12 12 C 1.49451 * 120.00260 * 3.18987 * 10 9 8 13 13 O 1.21349 * 119.99753 * 353.17041 * 12 10 9 14 14 N 1.34775 * 119.99805 * 173.16474 * 12 10 9 15 15 C 1.46924 * 120.63279 * 352.49990 * 14 12 10 16 16 C 1.53198 * 108.77440 * 233.58402 * 15 14 12 17 17 C 1.53039 * 109.31115 * 305.36291 * 16 15 14 18 18 C 1.53036 * 109.53737 * 61.36709 * 17 16 15 19 19 H 1.08995 * 109.50168 * 58.61765 * 18 17 16 20 20 C 1.50701 * 109.49868 * 178.68243 * 18 17 16 21 21 H 1.07999 * 119.99657 * 359.97438 * 20 18 17 22 22 C 1.37872 * 120.00273 * 180.02562 * 20 18 17 23 23 N 1.31519 * 120.00064 * 359.97438 * 22 20 18 24 24 Si 1.86801 * 120.00206 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47011 * 60.00142 * 24 22 20 26 26 H 1.48505 * 109.47375 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47291 * 299.99831 * 24 22 20 28 28 C 1.46927 * 120.63051 * 172.47245 * 14 12 10 29 29 H 1.09003 * 109.47166 * 192.90405 * 1 2 3 30 30 H 1.09006 * 109.47508 * 312.90310 * 1 2 3 31 31 H 1.09001 * 109.47301 * 72.90900 * 1 2 3 32 32 H 1.08996 * 108.78330 * 300.76918 * 4 2 1 33 33 H 1.09007 * 108.78328 * 58.97127 * 4 2 1 34 34 H 1.09002 * 109.93280 * 37.17369 * 5 4 2 35 35 H 1.08998 * 109.93140 * 158.38867 * 5 4 2 36 36 H 1.09001 * 109.74586 * 81.35968 * 7 6 5 37 37 H 1.09000 * 109.74557 * 202.03271 * 7 6 5 38 38 H 1.09000 * 108.31834 * 199.96171 * 8 7 6 39 39 H 1.09002 * 108.66211 * 82.29173 * 8 7 6 40 40 H 1.08998 * 109.58901 * 113.79393 * 15 14 12 41 41 H 1.09001 * 109.58626 * 353.36838 * 15 14 12 42 42 H 1.08994 * 109.49135 * 185.41111 * 16 15 14 43 43 H 1.08999 * 109.49300 * 65.31797 * 16 15 14 44 44 H 1.08998 * 109.46053 * 181.38423 * 17 16 15 45 45 H 1.09006 * 109.46283 * 301.34582 * 17 16 15 46 46 H 0.96998 * 119.99842 * 180.02562 * 23 22 20 47 47 H 1.09003 * 109.58410 * 6.62801 * 28 14 12 48 48 H 1.09000 * 109.70722 * 246.27611 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8855 1.0304 0.0000 4 6 2.0021 -0.6624 1.1923 5 6 3.5335 -0.7154 1.2811 6 16 4.0687 -2.1018 0.2889 7 6 4.4105 -1.4196 -1.3761 8 6 3.3262 -0.3387 -1.6854 9 7 2.0174 -0.6838 -1.2309 10 6 1.2607 -1.5896 -1.8815 11 8 0.1303 -1.8191 -1.5042 12 6 1.8135 -2.3115 -3.0676 13 8 2.8940 -1.9956 -3.5207 14 7 1.1121 -3.3133 -3.6339 15 6 -0.1158 -3.8170 -3.0036 16 6 0.0054 -5.3344 -2.8306 17 6 0.3254 -5.9740 -4.1836 18 6 1.6629 -5.4383 -4.6995 19 1 2.4473 -5.6607 -3.9761 20 6 1.9927 -6.0929 -6.0163 21 1 1.3164 -6.8189 -6.4427 22 6 3.1583 -5.7657 -6.6759 23 7 3.9822 -4.8819 -6.1563 24 14 3.5675 -6.5776 -8.3078 25 1 2.4996 -6.2729 -9.2937 26 1 4.8653 -6.0573 -8.8079 27 1 3.6625 -8.0475 -8.1193 28 6 1.5604 -3.9222 -4.8937 29 1 -0.3633 -1.0017 0.2295 30 1 -0.3634 0.6996 0.7528 31 1 -0.3634 0.3020 -0.9823 32 1 1.6181 -0.1322 2.0638 33 1 1.6143 -1.6810 1.2050 34 1 3.9606 0.2082 0.8903 35 1 3.8409 -0.8590 2.3169 36 1 5.4007 -0.9642 -1.3913 37 1 4.3603 -2.2165 -2.1180 38 1 3.2918 -0.1869 -2.7643 39 1 3.6232 0.5982 -1.2139 40 1 -0.9723 -3.5888 -3.6380 41 1 -0.2452 -3.3473 -2.0285 42 1 -0.9357 -5.7337 -2.4528 43 1 0.8053 -5.5572 -2.1245 44 1 0.3879 -7.0560 -4.0680 45 1 -0.4627 -5.7300 -4.8961 46 1 4.8020 -4.6515 -6.6207 47 1 2.5371 -3.5218 -5.1657 48 1 0.8425 -3.7027 -5.6840 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118448648.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:39 Heat of formation + Delta-G solvation = -36.335010 kcal Electronic energy + Delta-G solvation = -29929.977561 eV Core-core repulsion = 26112.359475 eV Total energy + Delta-G solvation = -3817.618086 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.01827 -38.89053 -37.30159 -36.71367 -34.18906 -33.23072 -31.72427 -31.08411 -29.73004 -29.26044 -25.99851 -25.04210 -24.51835 -23.88633 -22.73503 -21.77437 -21.08250 -19.37695 -18.43395 -17.05233 -16.84124 -16.31617 -16.12282 -15.79869 -15.58746 -15.37269 -14.78859 -14.50935 -14.23501 -14.10378 -13.86886 -13.49403 -13.34331 -13.15977 -12.99199 -12.82493 -12.59510 -12.25955 -12.21284 -12.14497 -11.86698 -11.73248 -11.48094 -11.38879 -11.04628 -10.95390 -10.81061 -10.60800 -10.41102 -10.26172 -10.01312 -9.84196 -9.67784 -9.14356 -9.09486 -8.86811 -8.45752 -8.31448 -7.79839 -7.55482 -6.01223 -4.09422 1.67002 1.81986 2.52759 2.70781 3.31528 3.37063 3.38881 3.63962 3.80134 4.30904 4.41962 4.60108 4.63392 4.76983 4.85405 4.99804 5.07123 5.24399 5.28927 5.31344 5.44251 5.51098 5.63600 5.64511 5.68810 5.79743 5.84396 5.90177 6.02278 6.07504 6.16764 6.24968 6.37688 6.42869 6.55778 6.61803 6.72576 6.87562 7.00075 7.05655 7.20223 7.23712 7.59104 7.82809 7.92956 7.97447 8.18082 8.36538 8.60657 8.94176 9.55957 11.04021 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016258 B = 0.003815 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.862805 B = 7338.128141 C = 8167.981938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.144 3.856 3 H 0.079 0.921 4 C -0.136 4.136 5 C -0.094 4.094 6 S -0.267 6.267 7 C -0.092 4.092 8 C 0.101 3.899 9 N -0.576 5.576 10 C 0.523 3.477 11 O -0.510 6.510 12 C 0.494 3.506 13 O -0.519 6.519 14 N -0.566 5.566 15 C 0.069 3.931 16 C -0.133 4.133 17 C -0.112 4.112 18 C 0.042 3.958 19 H 0.030 0.970 20 C -0.520 4.520 21 H 0.058 0.942 22 C 0.063 3.937 23 N -0.881 5.881 24 Si 0.892 3.108 25 H -0.277 1.277 26 H -0.287 1.287 27 H -0.277 1.277 28 C 0.109 3.891 29 H 0.085 0.915 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.104 0.896 36 H 0.090 0.910 37 H 0.132 0.868 38 H 0.108 0.892 39 H 0.070 0.930 40 H 0.058 0.942 41 H 0.129 0.871 42 H 0.059 0.941 43 H 0.058 0.942 44 H 0.050 0.950 45 H 0.049 0.951 46 H 0.263 0.737 47 H 0.124 0.876 48 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.874 12.303 14.408 19.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.043 3.957 3 H 0.097 0.903 4 C -0.176 4.176 5 C -0.242 4.242 6 S -0.041 6.041 7 C -0.241 4.241 8 C -0.025 4.025 9 N -0.309 5.309 10 C 0.308 3.692 11 O -0.387 6.387 12 C 0.276 3.724 13 O -0.397 6.397 14 N -0.298 5.298 15 C -0.053 4.053 16 C -0.171 4.171 17 C -0.150 4.150 18 C 0.023 3.977 19 H 0.048 0.952 20 C -0.559 4.559 21 H 0.076 0.924 22 C -0.139 4.139 23 N -0.519 5.519 24 Si 0.720 3.280 25 H -0.203 1.203 26 H -0.213 1.213 27 H -0.203 1.203 28 C -0.011 4.011 29 H 0.104 0.896 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.122 0.878 36 H 0.109 0.891 37 H 0.150 0.850 38 H 0.126 0.874 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.146 0.854 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.069 0.931 45 H 0.068 0.932 46 H 0.073 0.927 47 H 0.142 0.858 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.637 11.407 14.623 18.899 hybrid contribution 0.340 0.770 -1.312 1.559 sum -3.297 12.177 13.310 18.339 Atomic orbital electron populations 1.22230 0.92340 1.03835 1.02094 1.20029 0.96704 0.95382 0.83576 0.90277 1.20834 0.94588 1.03851 0.98285 1.23172 0.98418 1.00011 1.02610 1.86606 1.88211 1.18864 1.10396 1.25082 1.00647 1.03795 0.94606 1.21642 0.81702 0.95935 1.03243 1.47519 1.15847 1.40895 1.26644 1.20611 0.85270 0.79385 0.83899 1.90440 1.18591 1.62318 1.67330 1.19806 0.85602 0.82476 0.84526 1.90654 1.19629 1.65709 1.63747 1.48425 1.24699 1.31877 1.24755 1.22751 0.85835 0.95114 1.01603 1.21949 1.00730 0.95172 0.99255 1.21655 0.99819 0.99150 0.94397 1.18945 0.91794 0.90315 0.96678 0.95198 1.21060 1.05478 1.24017 1.05304 0.92374 1.25039 0.96102 0.95041 0.97759 1.69871 1.11534 1.31877 1.38598 0.86652 0.77591 0.79763 0.83970 1.20262 1.21266 1.20266 1.22464 1.02141 0.96348 0.80150 0.89618 0.93023 0.91879 0.89988 0.89670 0.89866 0.87772 0.89099 0.85047 0.87386 0.91140 0.92338 0.85427 0.92204 0.92369 0.93110 0.93250 0.92652 0.85803 0.93451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 7.67 37.15 0.29 -1.24 16 2 C 0.14 1.45 2.59 -70.58 -0.18 1.26 16 3 H 0.08 0.63 7.73 -51.93 -0.40 0.23 16 4 C -0.14 -1.26 4.49 -30.51 -0.14 -1.39 16 5 C -0.09 -0.88 5.97 37.41 0.22 -0.66 16 6 S -0.27 -3.65 20.99 -107.50 -2.26 -5.91 16 7 C -0.09 -1.28 6.69 38.87 0.26 -1.02 16 8 C 0.10 1.26 4.52 -4.28 -0.02 1.24 16 9 N -0.58 -7.55 2.06 -170.03 -0.35 -7.90 16 10 C 0.52 8.49 7.35 -11.58 -0.09 8.40 16 11 O -0.51 -8.28 9.49 5.49 0.05 -8.23 16 12 C 0.49 9.66 7.54 -11.59 -0.09 9.57 16 13 O -0.52 -10.92 10.73 5.50 0.06 -10.86 16 14 N -0.57 -11.61 2.97 -173.27 -0.51 -12.13 16 15 C 0.07 1.23 6.01 -3.71 -0.02 1.21 16 16 C -0.13 -2.36 6.08 -26.61 -0.16 -2.52 16 17 C -0.11 -2.32 5.11 -26.69 -0.14 -2.46 16 18 C 0.04 1.04 2.25 -91.65 -0.21 0.83 16 19 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 20 C -0.52 -14.02 8.56 -34.44 -0.29 -14.32 16 21 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 22 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 23 N -0.88 -25.05 11.40 55.43 0.63 -24.41 16 24 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 27 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 28 C 0.11 2.59 5.41 -3.71 -0.02 2.57 16 29 H 0.09 1.04 6.36 -51.93 -0.33 0.71 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.75 7.43 -51.93 -0.39 0.36 16 32 H 0.08 0.57 8.13 -51.93 -0.42 0.14 16 33 H 0.08 1.00 7.68 -51.93 -0.40 0.60 16 34 H 0.08 0.68 7.16 -51.78 -0.37 0.31 16 35 H 0.10 0.85 8.14 -51.79 -0.42 0.43 16 36 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.13 2.34 5.98 -51.93 -0.31 2.03 16 38 H 0.11 1.53 6.24 -51.93 -0.32 1.21 16 39 H 0.07 0.66 6.83 -51.93 -0.35 0.31 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.13 2.20 4.25 -55.14 -0.23 1.97 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 47 H 0.12 3.36 5.13 -51.93 -0.27 3.09 16 48 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 364.44 15.07 5.49 5.49 Total: -1.00 -29.11 364.44 -10.15 -39.26 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -7.57 Total: 5.53 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: -0.68 Total: 3.12 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: -0.23 Total: -44.44 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: 0.11 Total: -19.09 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -2.26 Total: -5.91 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.11 -10.15 -39.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118448648.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.924 kcal (2) G-P(sol) polarization free energy of solvation -29.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds