Wall clock time and date at job start Sat Apr 11 2020 06:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.03678 * 2 1 4 4 C 1.44337 * 109.09570 * 119.05275 * 2 1 3 5 5 C 1.53486 * 112.95738 * 179.86634 * 4 2 1 6 6 S 1.78687 * 107.07097 * 277.78211 * 5 4 2 7 7 C 1.83144 * 105.76594 * 92.55451 * 6 5 4 8 8 C 1.56199 * 107.95395 * 321.71235 * 7 6 5 9 9 N 1.42786 * 113.95543 * 321.00309 * 8 7 6 10 10 C 1.34778 * 121.56331 * 284.29841 * 9 8 7 11 11 O 1.21354 * 119.99640 * 183.19485 * 10 9 8 12 12 C 1.49451 * 120.00260 * 3.18987 * 10 9 8 13 13 O 1.21349 * 119.99753 * 353.17041 * 12 10 9 14 14 N 1.34775 * 119.99805 * 173.16474 * 12 10 9 15 15 C 1.46924 * 120.63279 * 352.49990 * 14 12 10 16 16 C 1.53198 * 108.77440 * 233.58402 * 15 14 12 17 17 C 1.53039 * 109.31115 * 305.36291 * 16 15 14 18 18 C 1.53036 * 109.53737 * 61.36709 * 17 16 15 19 19 H 1.08995 * 109.50168 * 58.61765 * 18 17 16 20 20 C 1.50701 * 109.49868 * 178.68243 * 18 17 16 21 21 H 1.07999 * 119.99657 * 359.97438 * 20 18 17 22 22 C 1.37872 * 120.00273 * 180.02562 * 20 18 17 23 23 N 1.31519 * 120.00064 * 359.97438 * 22 20 18 24 24 Si 1.86801 * 120.00206 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47011 * 60.00142 * 24 22 20 26 26 H 1.48505 * 109.47375 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47291 * 299.99831 * 24 22 20 28 28 C 1.46927 * 120.63051 * 172.47245 * 14 12 10 29 29 H 1.09003 * 109.47166 * 192.90405 * 1 2 3 30 30 H 1.09006 * 109.47508 * 312.90310 * 1 2 3 31 31 H 1.09001 * 109.47301 * 72.90900 * 1 2 3 32 32 H 1.08996 * 108.78330 * 300.76918 * 4 2 1 33 33 H 1.09007 * 108.78328 * 58.97127 * 4 2 1 34 34 H 1.09002 * 109.93280 * 37.17369 * 5 4 2 35 35 H 1.08998 * 109.93140 * 158.38867 * 5 4 2 36 36 H 1.09001 * 109.74586 * 81.35968 * 7 6 5 37 37 H 1.09000 * 109.74557 * 202.03271 * 7 6 5 38 38 H 1.09000 * 108.31834 * 199.96171 * 8 7 6 39 39 H 1.09002 * 108.66211 * 82.29173 * 8 7 6 40 40 H 1.08998 * 109.58901 * 113.79393 * 15 14 12 41 41 H 1.09001 * 109.58626 * 353.36838 * 15 14 12 42 42 H 1.08994 * 109.49135 * 185.41111 * 16 15 14 43 43 H 1.08999 * 109.49300 * 65.31797 * 16 15 14 44 44 H 1.08998 * 109.46053 * 181.38423 * 17 16 15 45 45 H 1.09006 * 109.46283 * 301.34582 * 17 16 15 46 46 H 0.96998 * 119.99842 * 180.02562 * 23 22 20 47 47 H 1.09003 * 109.58410 * 6.62801 * 28 14 12 48 48 H 1.09000 * 109.70722 * 246.27611 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8855 1.0304 0.0000 4 6 2.0021 -0.6624 1.1923 5 6 3.5335 -0.7154 1.2811 6 16 4.0687 -2.1018 0.2889 7 6 4.4105 -1.4196 -1.3761 8 6 3.3262 -0.3387 -1.6854 9 7 2.0174 -0.6838 -1.2309 10 6 1.2607 -1.5896 -1.8815 11 8 0.1303 -1.8191 -1.5042 12 6 1.8135 -2.3115 -3.0676 13 8 2.8940 -1.9956 -3.5207 14 7 1.1121 -3.3133 -3.6339 15 6 -0.1158 -3.8170 -3.0036 16 6 0.0054 -5.3344 -2.8306 17 6 0.3254 -5.9740 -4.1836 18 6 1.6629 -5.4383 -4.6995 19 1 2.4473 -5.6607 -3.9761 20 6 1.9927 -6.0929 -6.0163 21 1 1.3164 -6.8189 -6.4427 22 6 3.1583 -5.7657 -6.6759 23 7 3.9822 -4.8819 -6.1563 24 14 3.5675 -6.5776 -8.3078 25 1 2.4996 -6.2729 -9.2937 26 1 4.8653 -6.0573 -8.8079 27 1 3.6625 -8.0475 -8.1193 28 6 1.5604 -3.9222 -4.8937 29 1 -0.3633 -1.0017 0.2295 30 1 -0.3634 0.6996 0.7528 31 1 -0.3634 0.3020 -0.9823 32 1 1.6181 -0.1322 2.0638 33 1 1.6143 -1.6810 1.2050 34 1 3.9606 0.2082 0.8903 35 1 3.8409 -0.8590 2.3169 36 1 5.4007 -0.9642 -1.3913 37 1 4.3603 -2.2165 -2.1180 38 1 3.2918 -0.1869 -2.7643 39 1 3.6232 0.5982 -1.2139 40 1 -0.9723 -3.5888 -3.6380 41 1 -0.2452 -3.3473 -2.0285 42 1 -0.9357 -5.7337 -2.4528 43 1 0.8053 -5.5572 -2.1245 44 1 0.3879 -7.0560 -4.0680 45 1 -0.4627 -5.7300 -4.8961 46 1 4.8020 -4.6515 -6.6207 47 1 2.5371 -3.5218 -5.1657 48 1 0.8425 -3.7027 -5.6840 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118448648.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:38 Heat of formation + Delta-G solvation = -52.683760 kcal Electronic energy + Delta-G solvation = -29930.686496 eV Core-core repulsion = 26112.359475 eV Total energy + Delta-G solvation = -3818.327021 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.28381 -40.29087 -38.69328 -38.10158 -35.35953 -34.98611 -33.43634 -32.01948 -31.54269 -30.25693 -27.61125 -26.85248 -25.53513 -24.99388 -23.98178 -23.43637 -22.29309 -20.91508 -19.87048 -18.64652 -18.00444 -17.86123 -17.55173 -17.03727 -16.82658 -16.62537 -16.42400 -15.90768 -15.58888 -15.37653 -14.99062 -14.85954 -14.61913 -14.54712 -14.40467 -14.22886 -13.98799 -13.84681 -13.54198 -13.26376 -13.03992 -12.85937 -12.73444 -12.66162 -12.41069 -12.33688 -12.27462 -12.20252 -11.98324 -11.78336 -11.64706 -11.41275 -11.08289 -10.96631 -10.66821 -10.53815 -9.96901 -9.68817 -9.46906 -8.62858 -8.11115 -6.28039 0.41407 0.71079 1.31464 1.41749 1.43586 1.51016 1.75833 2.21141 2.39716 2.46791 3.15664 3.22729 3.58073 3.74105 3.79630 4.03313 4.12914 4.16463 4.18094 4.30815 4.33789 4.39178 4.49598 4.58513 4.68438 4.69950 4.73975 4.80816 4.83824 4.85005 4.91719 4.95448 5.04592 5.05537 5.17763 5.22524 5.27417 5.29823 5.35606 5.51685 5.57196 5.62959 5.85181 5.94562 6.03434 6.29398 6.43613 6.74273 6.83412 7.06818 7.41530 8.92300 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016258 B = 0.003815 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.862805 B = 7338.128141 C = 8167.981938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.140 3.860 3 H 0.117 0.883 4 C -0.131 4.131 5 C -0.074 4.074 6 S -0.331 6.331 7 C -0.083 4.083 8 C 0.102 3.898 9 N -0.566 5.566 10 C 0.527 3.473 11 O -0.511 6.511 12 C 0.481 3.519 13 O -0.541 6.541 14 N -0.578 5.578 15 C 0.071 3.929 16 C -0.125 4.125 17 C -0.106 4.106 18 C 0.041 3.959 19 H -0.015 1.015 20 C -0.539 4.539 21 H 0.061 0.939 22 C 0.014 3.986 23 N -0.912 5.912 24 Si 0.957 3.043 25 H -0.267 1.267 26 H -0.286 1.286 27 H -0.271 1.271 28 C 0.124 3.876 29 H 0.063 0.937 30 H 0.084 0.916 31 H 0.044 0.956 32 H 0.121 0.879 33 H 0.057 0.943 34 H 0.106 0.894 35 H 0.123 0.877 36 H 0.109 0.891 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.116 0.884 40 H 0.071 0.929 41 H 0.140 0.860 42 H 0.098 0.902 43 H 0.043 0.957 44 H 0.051 0.949 45 H 0.057 0.943 46 H 0.261 0.739 47 H 0.087 0.913 48 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.177 14.277 16.386 22.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.041 3.959 3 H 0.135 0.865 4 C -0.171 4.171 5 C -0.221 4.221 6 S -0.105 6.105 7 C -0.232 4.232 8 C -0.024 4.024 9 N -0.298 5.298 10 C 0.311 3.689 11 O -0.390 6.390 12 C 0.264 3.736 13 O -0.421 6.421 14 N -0.310 5.310 15 C -0.050 4.050 16 C -0.163 4.163 17 C -0.144 4.144 18 C 0.022 3.978 19 H 0.003 0.997 20 C -0.577 4.577 21 H 0.079 0.921 22 C -0.186 4.186 23 N -0.550 5.550 24 Si 0.783 3.217 25 H -0.192 1.192 26 H -0.212 1.212 27 H -0.196 1.196 28 C 0.003 3.997 29 H 0.082 0.918 30 H 0.103 0.897 31 H 0.063 0.937 32 H 0.139 0.861 33 H 0.076 0.924 34 H 0.125 0.875 35 H 0.141 0.859 36 H 0.127 0.873 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.134 0.866 40 H 0.089 0.911 41 H 0.156 0.844 42 H 0.117 0.883 43 H 0.062 0.938 44 H 0.070 0.930 45 H 0.076 0.924 46 H 0.070 0.930 47 H 0.105 0.895 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -4.955 13.397 16.637 21.928 hybrid contribution 0.787 0.205 -1.837 2.009 sum -4.168 13.602 14.800 20.529 Atomic orbital electron populations 1.22143 0.92416 1.03391 1.02064 1.20425 0.96708 0.96834 0.81970 0.86501 1.20787 0.94358 1.02695 0.99279 1.23293 0.98325 0.98286 1.02240 1.86860 1.88867 1.23339 1.11398 1.24880 1.02286 1.02604 0.93402 1.21687 0.81066 0.97110 1.02550 1.47617 1.15577 1.39477 1.27166 1.19869 0.85550 0.80218 0.83276 1.90429 1.18512 1.62837 1.67184 1.20622 0.85243 0.82250 0.85518 1.90653 1.20586 1.66172 1.64640 1.48427 1.25863 1.32574 1.24127 1.22929 0.84923 0.95013 1.02130 1.21908 1.02085 0.95123 0.97174 1.21545 0.97451 0.99242 0.96123 1.18863 0.92804 0.91177 0.94970 0.99662 1.21448 1.05796 1.24237 1.06232 0.92088 1.25848 0.96016 0.95509 1.01206 1.70056 1.11773 1.33163 1.39991 0.85622 0.77398 0.78872 0.79842 1.19230 1.21204 1.19584 1.21876 1.00140 0.95824 0.81882 0.91764 0.89717 0.93664 0.86068 0.92448 0.87523 0.85859 0.87266 0.90008 0.89598 0.86563 0.91086 0.84358 0.88327 0.93815 0.92987 0.92389 0.92991 0.89466 0.93991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 7.67 71.98 0.55 -1.94 16 2 C 0.14 2.27 2.59 41.89 0.11 2.37 16 3 H 0.12 1.14 7.73 -2.39 -0.02 1.13 16 4 C -0.13 -1.91 4.49 28.15 0.13 -1.78 16 5 C -0.07 -1.10 5.97 72.15 0.43 -0.67 16 6 S -0.33 -8.90 20.99 -56.49 -1.19 -10.09 16 7 C -0.08 -2.33 6.69 73.09 0.49 -1.84 16 8 C 0.10 2.42 4.52 88.17 0.40 2.82 16 9 N -0.57 -14.02 2.06 -810.22 -1.67 -15.69 16 10 C 0.53 17.14 7.35 87.27 0.64 17.79 16 11 O -0.51 -16.32 9.49 -3.26 -0.03 -16.35 16 12 C 0.48 19.74 7.54 87.27 0.66 20.40 16 13 O -0.54 -24.50 10.73 -3.24 -0.03 -24.54 16 14 N -0.58 -24.80 2.97 -820.47 -2.44 -27.24 16 15 C 0.07 2.52 6.01 86.36 0.52 3.04 16 16 C -0.12 -4.39 6.08 30.67 0.19 -4.20 16 17 C -0.11 -4.42 5.11 30.62 0.16 -4.27 16 18 C 0.04 2.14 2.25 -11.46 -0.03 2.12 16 19 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 20 C -0.54 -30.10 8.56 25.60 0.22 -29.88 16 21 H 0.06 3.29 7.74 -2.91 -0.02 3.26 16 22 C 0.01 0.79 5.30 84.65 0.45 1.24 16 23 N -0.91 -54.61 11.40 21.45 0.24 -54.37 16 24 Si 0.96 44.21 29.54 68.60 2.03 46.24 16 25 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 26 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 27 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 28 C 0.12 6.30 5.41 86.36 0.47 6.76 16 29 H 0.06 1.42 6.36 -2.39 -0.02 1.40 16 30 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.04 0.96 7.43 -2.39 -0.02 0.94 16 32 H 0.12 0.95 8.13 -2.39 -0.02 0.93 16 33 H 0.06 1.22 7.68 -2.38 -0.02 1.20 16 34 H 0.11 1.16 7.16 -2.48 -0.02 1.14 16 35 H 0.12 1.46 8.14 -2.48 -0.02 1.44 16 36 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 37 H 0.08 3.17 5.98 -2.39 -0.01 3.16 16 38 H 0.09 2.48 6.24 -2.39 -0.01 2.46 16 39 H 0.12 1.71 6.83 -2.39 -0.02 1.70 16 40 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 41 H 0.14 4.70 4.25 -53.18 -0.23 4.47 16 42 H 0.10 2.73 8.14 -2.39 -0.02 2.72 16 43 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 45 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 46 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 47 H 0.09 5.09 5.13 -2.39 -0.01 5.08 16 48 H 0.04 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -69.82 364.44 3.03 -66.80 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: 0.74 Total: 23.30 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: 5.38 Total: 11.95 kcal Atomic # 7 Polarization: -93.44 SS G_CDS: -3.87 Total: -97.31 kcal Atomic # 8 Polarization: -40.82 SS G_CDS: -0.07 Total: -40.89 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 16 Polarization: -8.90 SS G_CDS: -1.19 Total: -10.09 kcal Total: -69.82 3.03 -66.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118448648.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.113 kcal (2) G-P(sol) polarization free energy of solvation -69.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds