Wall clock time and date at job start Sat Apr 11 2020 06:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.00284 * 2 1 4 4 C 1.54323 * 109.88060 * 238.90270 * 2 1 3 5 5 C 1.55159 * 102.94375 * 218.39163 * 4 2 1 6 6 H 1.08999 * 111.00962 * 153.57635 * 5 4 2 7 7 N 1.46504 * 111.00648 * 277.43270 * 5 4 2 8 8 C 1.34766 * 119.99908 * 198.65017 * 7 5 4 9 9 O 1.21285 * 120.00184 * 359.97438 * 8 7 5 10 10 C 1.50702 * 120.00041 * 180.02562 * 8 7 5 11 11 S 1.80998 * 109.47378 * 179.97438 * 10 8 7 12 12 C 1.76203 * 99.99977 * 179.97438 * 11 10 8 13 13 H 1.07994 * 120.00204 * 0.02562 * 12 11 10 14 14 C 1.38801 * 119.99645 * 180.02562 * 12 11 10 15 15 N 1.31633 * 119.99701 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 120.00167 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.46969 * 90.00454 * 16 14 12 18 18 H 1.48505 * 109.47001 * 210.00113 * 16 14 12 19 19 H 1.48498 * 109.47570 * 330.00399 * 16 14 12 20 20 C 1.54913 * 101.57951 * 35.50477 * 5 4 2 21 21 N 1.47290 * 109.87160 * 121.06290 * 2 1 3 22 22 C 1.34779 * 125.78851 * 298.35412 * 21 2 1 23 23 O 1.21279 * 120.00344 * 0.02725 * 22 21 2 24 24 C 1.50704 * 119.99797 * 180.02562 * 22 21 2 25 25 C 1.53000 * 109.47018 * 177.91005 * 24 22 21 26 26 C 1.53000 * 115.55560 * 294.33448 * 25 24 22 27 27 C 1.53009 * 117.49478 * 148.66306 * 25 24 22 28 28 C 1.53006 * 117.49619 * 80.00745 * 25 24 22 29 29 H 1.08993 * 109.47696 * 181.09167 * 1 2 3 30 30 H 1.08996 * 109.47310 * 301.09786 * 1 2 3 31 31 H 1.09008 * 109.46961 * 61.09532 * 1 2 3 32 32 H 1.09004 * 110.72069 * 100.03204 * 4 2 1 33 33 H 1.08996 * 110.72360 * 336.75511 * 4 2 1 34 34 H 0.96999 * 119.99805 * 18.64826 * 7 5 4 35 35 H 1.09005 * 109.46960 * 299.99618 * 10 8 7 36 36 H 1.08998 * 109.47494 * 59.99456 * 10 8 7 37 37 H 0.96999 * 119.99839 * 179.97438 * 15 14 12 38 38 H 1.09000 * 110.36867 * 81.82989 * 20 5 4 39 39 H 1.09002 * 110.36962 * 204.04396 * 20 5 4 40 40 H 1.09000 * 109.46981 * 297.91168 * 24 22 21 41 41 H 1.09000 * 109.47207 * 57.91752 * 24 22 21 42 42 H 1.09002 * 109.46758 * 63.70605 * 26 25 24 43 43 H 1.08994 * 109.47403 * 183.71299 * 26 25 24 44 44 H 1.09001 * 109.46948 * 303.71711 * 26 25 24 45 45 H 1.08997 * 117.49743 * 0.02562 * 27 25 24 46 46 H 1.08999 * 117.49241 * 145.02720 * 27 25 24 47 47 H 1.09003 * 117.49869 * 214.97888 * 28 25 24 48 48 H 1.08997 * 117.49779 * 359.96858 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7496 -1.2427 5 6 3.2875 -1.5143 -0.6924 6 1 3.4851 -2.4112 -1.2796 7 7 4.4674 -0.6470 -0.6493 8 6 5.6990 -1.1881 -0.5686 9 8 5.8306 -2.3933 -0.5312 10 6 6.9127 -0.2959 -0.5237 11 16 8.4058 -1.3132 -0.4163 12 6 9.6344 -0.0506 -0.3805 13 1 9.3424 0.9882 -0.4220 14 6 10.9774 -0.3914 -0.2988 15 7 11.8952 0.5519 -0.2715 16 14 11.4824 -2.1883 -0.2262 17 1 11.6924 -2.6995 -1.6045 18 1 12.7437 -2.3172 0.5470 19 1 10.4128 -2.9768 0.4365 20 6 2.8144 -1.8795 0.7368 21 7 2.0306 -0.7147 1.1866 22 6 1.8102 -0.3641 2.4691 23 8 1.1467 0.6186 2.7238 24 6 2.3883 -1.1933 3.5869 25 6 2.0360 -0.5534 4.9313 26 6 2.6651 0.8160 5.1955 27 6 1.8452 -1.4861 6.1292 28 6 0.6332 -0.8057 5.4877 29 1 -0.3634 -1.0274 0.0196 30 1 -0.3634 0.5308 0.8799 31 1 -0.3633 0.4968 -0.8997 32 1 2.3529 -0.0460 -2.0201 33 1 1.3051 -1.4459 -1.6182 34 1 4.3621 0.3169 -0.6788 35 1 6.9507 0.3115 -1.4280 36 1 6.8533 0.3547 0.3488 37 1 12.8338 0.3138 -0.2141 38 1 2.1884 -2.7716 0.7128 39 1 3.6715 -2.0359 1.3918 40 1 1.9736 -2.2004 3.5441 41 1 3.4720 -1.2416 3.4805 42 1 2.2907 1.5345 4.4663 43 1 2.4039 1.1482 6.2002 44 1 3.7490 0.7409 5.1079 45 1 1.9710 -2.5554 5.9594 46 1 2.1674 -1.1238 7.1054 47 1 0.1586 0.0039 6.0423 48 1 -0.0388 -1.4270 4.8958 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001287943493.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:05 Heat of formation + Delta-G solvation = -75.777015 kcal Electronic energy + Delta-G solvation = -27640.517857 eV Core-core repulsion = 23821.189437 eV Total energy + Delta-G solvation = -3819.328420 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.64532 -40.54322 -39.20113 -37.94620 -35.14512 -34.66717 -33.20187 -31.97363 -30.35659 -29.81418 -28.90334 -27.84788 -26.89003 -23.94158 -23.29398 -22.57602 -21.54750 -20.47081 -19.89623 -19.45543 -18.16328 -18.02183 -17.59007 -17.09217 -16.75457 -16.57765 -16.28383 -16.07191 -15.59937 -15.25511 -15.09364 -14.95973 -14.73827 -14.59084 -14.34584 -13.82526 -13.72937 -13.60531 -13.33483 -13.31828 -13.18301 -13.07611 -13.00188 -12.86027 -12.65577 -12.44797 -12.36314 -12.22455 -12.15140 -11.86007 -11.75250 -11.29553 -11.16602 -10.98640 -10.89637 -10.53727 -10.43770 -10.26433 -9.59312 -8.98245 -8.51275 -6.21851 0.99785 1.32457 1.47264 1.55320 1.56782 1.65646 1.92368 2.21230 2.26278 2.71418 2.86052 2.87189 3.36538 3.46747 3.67344 3.75054 3.87441 3.89530 3.95541 4.03618 4.14946 4.20494 4.23214 4.34399 4.41613 4.47859 4.52171 4.58322 4.64192 4.69435 4.77557 4.80776 4.88596 4.90895 4.94248 4.97530 5.02902 5.08387 5.14678 5.25081 5.28184 5.35728 5.46207 5.48467 5.70669 6.11765 6.42778 6.49510 6.93776 7.17135 7.20279 8.61366 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011842 B = 0.002786 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2363.920578 B =10046.933334 C =11472.691044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.127 3.873 3 H 0.066 0.934 4 C -0.117 4.117 5 C 0.131 3.869 6 H 0.112 0.888 7 N -0.705 5.705 8 C 0.542 3.458 9 O -0.552 6.552 10 C -0.115 4.115 11 S -0.167 6.167 12 C -0.531 4.531 13 H 0.059 0.941 14 C 0.043 3.957 15 N -0.919 5.919 16 Si 0.916 3.084 17 H -0.261 1.261 18 H -0.261 1.261 19 H -0.233 1.233 20 C 0.087 3.913 21 N -0.615 5.615 22 C 0.529 3.471 23 O -0.563 6.563 24 C -0.099 4.099 25 C -0.125 4.125 26 C -0.114 4.114 27 C -0.162 4.162 28 C -0.167 4.167 29 H 0.063 0.937 30 H 0.041 0.959 31 H 0.082 0.918 32 H 0.107 0.893 33 H 0.117 0.883 34 H 0.412 0.588 35 H 0.111 0.889 36 H 0.106 0.894 37 H 0.277 0.723 38 H 0.102 0.898 39 H 0.069 0.931 40 H 0.109 0.891 41 H 0.096 0.904 42 H 0.051 0.949 43 H 0.062 0.938 44 H 0.054 0.946 45 H 0.106 0.894 46 H 0.102 0.898 47 H 0.090 0.910 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.946 -4.656 3.686 27.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.024 3.976 3 H 0.084 0.916 4 C -0.155 4.155 5 C 0.026 3.974 6 H 0.130 0.870 7 N -0.358 5.358 8 C 0.327 3.673 9 O -0.430 6.430 10 C -0.266 4.266 11 S 0.060 5.940 12 C -0.678 4.678 13 H 0.077 0.923 14 C -0.162 4.162 15 N -0.557 5.557 16 Si 0.738 3.262 17 H -0.186 1.186 18 H -0.185 1.185 19 H -0.157 1.157 20 C -0.037 4.037 21 N -0.349 5.349 22 C 0.319 3.681 23 O -0.442 6.442 24 C -0.139 4.139 25 C -0.125 4.125 26 C -0.171 4.171 27 C -0.199 4.199 28 C -0.204 4.204 29 H 0.082 0.918 30 H 0.060 0.940 31 H 0.101 0.899 32 H 0.125 0.875 33 H 0.136 0.864 34 H 0.248 0.752 35 H 0.130 0.870 36 H 0.124 0.876 37 H 0.086 0.914 38 H 0.120 0.880 39 H 0.088 0.912 40 H 0.127 0.873 41 H 0.114 0.886 42 H 0.070 0.930 43 H 0.081 0.919 44 H 0.073 0.927 45 H 0.124 0.876 46 H 0.120 0.880 47 H 0.109 0.891 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -26.930 -6.036 3.972 27.882 hybrid contribution 0.730 1.810 0.073 1.953 sum -26.200 -4.226 4.045 26.845 Atomic orbital electron populations 1.22039 0.94110 1.02466 1.02518 1.21745 0.95136 0.96183 0.84515 0.91556 1.23069 0.95771 1.00497 0.96191 1.22169 0.84453 0.95178 0.95595 0.87041 1.45723 1.04077 1.11014 1.74970 1.19801 0.84333 0.88060 0.75065 1.90698 1.86474 1.15947 1.49857 1.23286 0.94470 1.01780 1.07063 1.84602 0.98724 1.13536 1.97168 1.22484 0.93552 0.93781 1.58004 0.92275 1.25612 0.95454 1.02218 0.92889 1.70027 1.01743 1.34876 1.49093 0.85841 0.80108 0.80082 0.80179 1.18596 1.18549 1.15716 1.22888 0.95503 0.89157 0.96125 1.48739 1.52403 1.28781 1.04992 1.20570 0.79790 0.85065 0.82724 1.90655 1.41196 1.28818 1.83504 1.21217 1.02462 0.99478 0.90699 1.21084 1.00835 0.97258 0.93347 1.21293 0.99743 0.94599 1.01485 1.23214 1.01455 0.98686 0.96506 1.22944 0.90735 1.03129 1.03577 0.91845 0.93982 0.89875 0.87498 0.86423 0.75153 0.87040 0.87560 0.91393 0.88048 0.91250 0.87279 0.88603 0.93017 0.91910 0.92730 0.87561 0.87989 0.89135 0.89097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.10 71.98 0.65 -1.44 16 2 C 0.13 1.79 3.46 45.29 0.16 1.95 16 3 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 4 C -0.12 -1.06 6.05 31.78 0.19 -0.87 16 5 C 0.13 1.97 3.32 46.38 0.15 2.12 16 6 H 0.11 1.81 7.73 -2.39 -0.02 1.79 16 7 N -0.70 -13.86 5.22 -435.95 -2.28 -16.14 16 8 C 0.54 16.38 7.85 87.66 0.69 17.06 16 9 O -0.55 -20.55 15.61 -3.05 -0.05 -20.60 16 10 C -0.12 -4.09 6.16 71.24 0.44 -3.65 16 11 S -0.17 -8.10 18.55 -56.49 -1.05 -9.15 16 12 C -0.53 -30.45 10.04 67.95 0.68 -29.77 16 13 H 0.06 3.61 8.03 -2.91 -0.02 3.58 16 14 C 0.04 2.53 5.50 84.86 0.47 2.99 16 15 N -0.92 -55.78 13.97 21.65 0.30 -55.48 16 16 Si 0.92 44.17 27.74 68.60 1.90 46.07 16 17 H -0.26 -12.25 7.11 99.48 0.71 -11.55 16 18 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16 19 H -0.23 -11.10 6.74 99.48 0.67 -10.43 16 20 C 0.09 1.34 6.38 86.86 0.55 1.89 16 21 N -0.61 -10.62 3.07 -787.42 -2.42 -13.04 16 22 C 0.53 11.48 7.51 87.66 0.66 12.14 16 23 O -0.56 -15.73 13.55 -3.03 -0.04 -15.77 16 24 C -0.10 -1.80 4.63 29.85 0.14 -1.66 16 25 C -0.12 -2.37 1.60 -52.18 -0.08 -2.45 16 26 C -0.11 -2.41 9.45 71.98 0.68 -1.73 16 27 C -0.16 -2.42 9.92 30.62 0.30 -2.12 16 28 C -0.17 -2.91 9.91 30.62 0.30 -2.61 16 29 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.04 0.83 6.92 -2.39 -0.02 0.82 16 31 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.11 0.73 8.14 -2.38 -0.02 0.71 16 33 H 0.12 0.63 7.85 -2.39 -0.02 0.61 16 34 H 0.41 6.50 8.62 -92.71 -0.80 5.70 16 35 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 36 H 0.11 3.59 8.14 -2.40 -0.02 3.57 16 37 H 0.28 15.51 8.31 -92.71 -0.77 14.74 16 38 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.07 1.33 7.41 -2.39 -0.02 1.32 16 40 H 0.11 1.55 8.09 -2.39 -0.02 1.53 16 41 H 0.10 1.77 7.75 -2.39 -0.02 1.75 16 42 H 0.05 1.31 6.63 -2.39 -0.02 1.29 16 43 H 0.06 1.17 8.10 -2.39 -0.02 1.15 16 44 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 48 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -75.02 402.68 2.47 -72.55 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: 0.11 Total: 19.69 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: 5.99 Total: -8.14 kcal Atomic # 7 Polarization: -80.26 SS G_CDS: -4.39 Total: -84.65 kcal Atomic # 8 Polarization: -36.28 SS G_CDS: -0.09 Total: -36.37 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.90 Total: 46.07 kcal Atomic # 16 Polarization: -8.10 SS G_CDS: -1.05 Total: -9.15 kcal Total: -75.02 2.47 -72.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001287943493.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.228 kcal (2) G-P(sol) polarization free energy of solvation -75.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds