Wall clock time and date at job start Sat Apr 11 2020 06:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50696 * 109.47241 * 2 1 4 4 O 1.21282 * 119.99963 * 0.02562 * 3 2 1 5 5 N 1.34780 * 120.00294 * 179.97438 * 3 2 1 6 6 C 1.46493 * 120.00106 * 180.02562 * 5 3 2 7 7 H 1.08996 * 109.92619 * 36.15949 * 6 5 3 8 8 C 1.53839 * 109.94092 * 274.99959 * 6 5 3 9 9 C 1.52530 * 111.65788 * 183.33119 * 8 6 5 10 10 C 1.53812 * 111.70120 * 54.05247 * 9 8 6 11 11 C 1.51621 * 107.02553 * 302.45716 * 10 9 8 12 12 H 1.09001 * 110.50546 * 303.65445 * 11 10 9 13 13 C 1.53060 * 116.67476 * 176.24978 * 11 10 9 14 14 N 1.48663 * 103.44444 * 204.11773 * 13 11 10 15 15 C 1.34773 * 125.78113 * 204.38186 * 14 13 11 16 16 O 1.21287 * 119.99548 * 180.02562 * 15 14 13 17 17 C 1.50695 * 120.00396 * 0.02562 * 15 14 13 18 18 S 1.81000 * 109.47338 * 179.97438 * 17 15 14 19 19 C 1.76199 * 100.00265 * 180.02562 * 18 17 15 20 20 H 1.08004 * 119.99604 * 359.97438 * 19 18 17 21 21 C 1.38796 * 120.00161 * 180.02562 * 19 18 17 22 22 N 1.31633 * 120.00140 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00142 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47297 * 59.99698 * 23 21 19 25 25 H 1.48503 * 109.47261 * 299.99879 * 23 21 19 26 26 H 1.48500 * 109.47454 * 179.97438 * 23 21 19 27 27 C 1.48243 * 108.42911 * 24.63827 * 14 13 11 28 28 C 1.51440 * 110.00993 * 157.36060 * 6 5 3 29 29 H 1.09002 * 109.86816 * 65.23932 * 28 6 5 30 30 H 1.09001 * 109.47296 * 299.99663 * 1 2 3 31 31 H 1.08992 * 109.47165 * 59.99917 * 1 2 3 32 32 H 1.09004 * 109.47177 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47237 * 239.99563 * 2 1 3 34 34 H 1.09003 * 109.46844 * 120.00375 * 2 1 3 35 35 H 0.96996 * 119.99417 * 0.02562 * 5 3 2 36 36 H 1.09004 * 109.04095 * 62.77235 * 8 6 5 37 37 H 1.08996 * 108.98736 * 303.85384 * 8 6 5 38 38 H 1.08997 * 109.03360 * 293.47740 * 9 8 6 39 39 H 1.09003 * 109.03204 * 174.62237 * 9 8 6 40 40 H 1.08996 * 109.94180 * 183.08462 * 10 9 8 41 41 H 1.08997 * 110.01711 * 61.87861 * 10 9 8 42 42 H 1.09003 * 110.62905 * 85.62506 * 13 11 10 43 43 H 1.08996 * 110.76372 * 322.66915 * 13 11 10 44 44 H 1.09004 * 109.47077 * 60.00506 * 17 15 14 45 45 H 1.08997 * 109.47267 * 300.00260 * 17 15 14 46 46 H 0.97001 * 119.99591 * 359.97438 * 22 21 19 47 47 H 1.09004 * 110.16852 * 122.02586 * 27 14 13 48 48 H 1.08998 * 110.17095 * 243.82369 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3574 1.6671 0.0005 6 6 3.8457 3.0482 0.0011 7 1 3.1893 3.6741 0.6057 8 6 3.9023 3.5853 -1.4394 9 6 4.4833 4.9946 -1.4923 10 6 5.8555 5.0704 -0.8016 11 6 5.6604 4.5998 0.6264 12 1 4.8959 5.1965 1.1240 13 6 6.9165 4.5025 1.4956 14 7 6.5429 3.5048 2.5325 15 6 7.0887 3.4026 3.7605 16 8 6.7027 2.5448 4.5261 17 6 8.1787 4.3539 4.1823 18 16 8.6999 3.9637 5.8711 19 6 9.9420 5.1924 6.0997 20 1 10.1657 5.8884 5.3047 21 6 10.6336 5.2650 7.3008 22 7 10.3620 4.4157 8.2691 23 14 11.9499 6.5681 7.5434 24 1 11.3451 7.9163 7.3955 25 1 13.0165 6.3898 6.5255 26 1 12.5343 6.4346 8.9020 27 6 5.4727 2.6377 1.9845 28 6 5.2565 3.0989 0.5493 29 1 5.9331 2.5665 -0.1192 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 3.9877 0.9298 0.0005 36 1 2.8939 3.6006 -1.8531 37 1 4.5233 2.9218 -2.0411 38 1 3.7971 5.6809 -0.9960 39 1 4.5927 5.2951 -2.5344 40 1 6.2186 6.0981 -0.8079 41 1 6.5669 4.4219 -1.3129 42 1 7.1424 5.4657 1.9531 43 1 7.7650 4.1484 0.9102 44 1 7.8027 5.3764 4.1457 45 1 9.0287 4.2549 3.5073 46 1 9.6783 3.7393 8.1433 47 1 5.7881 1.5944 2.0027 48 1 4.5554 2.7638 2.5596 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001287986499.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:11 Heat of formation + Delta-G solvation = -94.206334 kcal Electronic energy + Delta-G solvation = -27457.270049 eV Core-core repulsion = 23637.142474 eV Total energy + Delta-G solvation = -3820.127575 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.11364 -39.73598 -38.45874 -35.80123 -34.53518 -33.14672 -32.53944 -31.40640 -30.65205 -29.09037 -27.44014 -25.36718 -24.84103 -24.15912 -21.80498 -21.45441 -20.85299 -20.19447 -19.41824 -18.23024 -17.53927 -16.76522 -16.35898 -16.16601 -15.93759 -15.47663 -14.89064 -14.81647 -14.61878 -14.33005 -14.08112 -13.84132 -13.72614 -13.35440 -13.21601 -13.09405 -12.79320 -12.66176 -12.46181 -12.21205 -12.11819 -12.09145 -12.01627 -11.85095 -11.59379 -11.51637 -11.22572 -11.01272 -10.92843 -10.88866 -10.76989 -10.18373 -10.04397 -9.59284 -9.53534 -9.39566 -9.02655 -8.63759 -8.23617 -6.68899 -6.63294 -4.01385 2.33132 2.71262 2.77936 2.94987 3.30559 3.36913 3.41786 3.56961 3.84925 4.16417 4.22391 4.25866 4.34986 4.60114 4.67169 4.69518 4.72911 4.75590 4.91816 4.95164 4.97382 5.00488 5.10819 5.15884 5.20496 5.21330 5.31649 5.37020 5.43834 5.45713 5.55797 5.56696 5.58676 5.65788 5.69767 5.71203 5.79676 5.80511 5.83302 5.86995 5.99274 6.03138 6.14236 6.23694 7.13830 7.53701 7.90292 7.90439 8.43346 8.48858 9.25952 10.80585 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018800 B = 0.002248 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.032157 B =12452.983880 C =13680.993935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.146 4.146 3 C 0.512 3.488 4 O -0.539 6.539 5 N -0.729 5.729 6 C 0.163 3.837 7 H 0.093 0.907 8 C -0.127 4.127 9 C -0.115 4.115 10 C -0.106 4.106 11 C -0.100 4.100 12 H 0.090 0.910 13 C 0.110 3.890 14 N -0.629 5.629 15 C 0.547 3.453 16 O -0.516 6.516 17 C -0.124 4.124 18 S -0.117 6.117 19 C -0.607 4.607 20 H 0.066 0.934 21 C 0.035 3.965 22 N -0.883 5.883 23 Si 1.084 2.916 24 H -0.285 1.285 25 H -0.285 1.285 26 H -0.278 1.278 27 C 0.123 3.877 28 C -0.115 4.115 29 H 0.089 0.911 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.401 0.599 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.082 0.918 43 H 0.072 0.928 44 H 0.091 0.909 45 H 0.091 0.909 46 H 0.278 0.722 47 H 0.069 0.931 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.995 -4.332 -25.299 29.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.186 4.186 3 C 0.299 3.701 4 O -0.416 6.416 5 N -0.380 5.380 6 C 0.058 3.942 7 H 0.111 0.889 8 C -0.165 4.165 9 C -0.153 4.153 10 C -0.144 4.144 11 C -0.120 4.120 12 H 0.109 0.891 13 C -0.013 4.013 14 N -0.367 5.367 15 C 0.335 3.665 16 O -0.391 6.391 17 C -0.275 4.275 18 S 0.109 5.891 19 C -0.755 4.755 20 H 0.084 0.916 21 C -0.176 4.176 22 N -0.518 5.518 23 Si 0.910 3.090 24 H -0.211 1.211 25 H -0.211 1.211 26 H -0.203 1.203 27 C 0.001 3.999 28 C -0.134 4.134 29 H 0.107 0.893 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.235 0.765 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.101 0.899 43 H 0.091 0.909 44 H 0.109 0.891 45 H 0.110 0.890 46 H 0.090 0.910 47 H 0.088 0.912 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.021 -4.391 -22.951 27.251 hybrid contribution -0.172 0.165 -2.157 2.170 sum -14.193 -4.226 -25.108 29.150 Atomic orbital electron populations 1.21525 0.92962 1.01637 1.03368 1.21653 0.98784 0.93742 1.04434 1.20830 0.82057 0.91940 0.75259 1.90710 1.55253 1.46585 1.49042 1.46118 1.07285 1.08650 1.75920 1.20700 0.93513 0.83188 0.96784 0.88927 1.21928 1.01758 0.96789 0.96066 1.21493 0.96350 0.96464 1.01007 1.21388 0.97434 1.02028 0.93583 1.22092 0.98211 0.95292 0.96356 0.89144 1.22085 0.96699 0.93153 0.89393 1.49095 1.39293 1.34258 1.14017 1.20011 0.82287 0.84805 0.79351 1.90713 1.61733 1.35743 1.50882 1.23286 0.98702 1.00923 1.04542 1.84832 1.48578 1.46828 1.08821 1.23686 1.25214 1.20179 1.06403 0.91619 1.26064 0.99847 1.00536 0.91117 1.70802 1.31063 1.16569 1.33324 0.83330 0.74814 0.74284 0.76569 1.21122 1.21126 1.20263 1.21463 0.91354 0.94716 0.92416 1.22158 0.96887 0.97901 0.96498 0.89288 0.91905 0.92061 0.92056 0.88967 0.88742 0.76454 0.91260 0.91831 0.91670 0.91423 0.90880 0.91179 0.89938 0.90944 0.89055 0.89047 0.90987 0.91245 0.91464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 9.20 37.16 0.34 -0.58 16 2 C -0.15 -0.85 6.42 -27.88 -0.18 -1.03 16 3 C 0.51 4.55 7.80 -10.99 -0.09 4.47 16 4 O -0.54 -7.00 15.68 5.56 0.09 -6.91 16 5 N -0.73 -5.10 5.03 -54.16 -0.27 -5.37 16 6 C 0.16 1.27 2.18 -68.29 -0.15 1.12 16 7 H 0.09 0.95 7.56 -51.93 -0.39 0.56 16 8 C -0.13 -0.86 5.44 -26.54 -0.14 -1.00 16 9 C -0.11 -0.69 5.84 -26.55 -0.16 -0.84 16 10 C -0.11 -0.62 5.71 -27.01 -0.15 -0.78 16 11 C -0.10 -0.78 2.48 -89.89 -0.22 -1.00 16 12 H 0.09 0.78 8.07 -51.93 -0.42 0.37 16 13 C 0.11 1.11 6.34 -2.82 -0.02 1.09 16 14 N -0.63 -8.84 3.38 -170.89 -0.58 -9.41 16 15 C 0.55 10.55 7.88 -10.99 -0.09 10.47 16 16 O -0.52 -12.01 16.20 5.55 0.09 -11.92 16 17 C -0.12 -2.54 5.19 36.00 0.19 -2.36 16 18 S -0.12 -3.18 19.60 -107.50 -2.11 -5.29 16 19 C -0.61 -17.53 9.50 30.94 0.29 -17.23 16 20 H 0.07 1.81 7.80 -52.48 -0.41 1.40 16 21 C 0.03 1.02 5.49 -17.43 -0.10 0.92 16 22 N -0.88 -27.59 13.67 55.49 0.76 -26.83 16 23 Si 1.08 24.91 29.92 -169.99 -5.09 19.83 16 24 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 25 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 27 C 0.12 1.40 6.52 -3.45 -0.02 1.38 16 28 C -0.11 -0.89 1.81 -90.38 -0.16 -1.05 16 29 H 0.09 0.59 7.92 -51.93 -0.41 0.18 16 30 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 31 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.40 1.88 8.60 -40.82 -0.35 1.53 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.38 7.98 -51.93 -0.41 -0.04 16 42 H 0.08 0.84 7.54 -51.93 -0.39 0.45 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.09 1.76 7.88 -51.91 -0.41 1.35 16 45 H 0.09 1.75 8.14 -51.92 -0.42 1.33 16 46 H 0.28 8.87 7.12 -40.82 -0.29 8.58 16 47 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.07 0.86 8.08 -51.93 -0.42 0.44 16 LS Contribution 396.91 15.07 5.98 5.98 Total: -1.00 -37.21 396.91 -9.98 -47.19 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -8.20 Total: -0.83 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -0.65 Total: -6.43 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: -0.09 Total: -41.62 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: 0.18 Total: -18.83 kcal Atomic # 14 Polarization: 24.91 SS G_CDS: -5.09 Total: 19.83 kcal Atomic # 16 Polarization: -3.18 SS G_CDS: -2.11 Total: -5.29 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -37.21 -9.98 -47.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001287986499.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.019 kcal (2) G-P(sol) polarization free energy of solvation -37.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds