Wall clock time and date at job start Sat Apr 11 2020 06:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50696 * 109.47241 * 2 1 4 4 O 1.21282 * 119.99963 * 0.02562 * 3 2 1 5 5 N 1.34780 * 120.00294 * 179.97438 * 3 2 1 6 6 C 1.46493 * 120.00106 * 180.02562 * 5 3 2 7 7 H 1.08996 * 109.92619 * 36.15949 * 6 5 3 8 8 C 1.53839 * 109.94092 * 274.99959 * 6 5 3 9 9 C 1.52530 * 111.65788 * 183.33119 * 8 6 5 10 10 C 1.53812 * 111.70120 * 54.05247 * 9 8 6 11 11 C 1.51621 * 107.02553 * 302.45716 * 10 9 8 12 12 H 1.09001 * 110.50546 * 303.65445 * 11 10 9 13 13 C 1.53060 * 116.67476 * 176.24978 * 11 10 9 14 14 N 1.48663 * 103.44444 * 204.11773 * 13 11 10 15 15 C 1.34773 * 125.78113 * 204.38186 * 14 13 11 16 16 O 1.21287 * 119.99548 * 180.02562 * 15 14 13 17 17 C 1.50695 * 120.00396 * 0.02562 * 15 14 13 18 18 S 1.81000 * 109.47338 * 179.97438 * 17 15 14 19 19 C 1.76199 * 100.00265 * 180.02562 * 18 17 15 20 20 H 1.08004 * 119.99604 * 359.97438 * 19 18 17 21 21 C 1.38796 * 120.00161 * 180.02562 * 19 18 17 22 22 N 1.31633 * 120.00140 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00142 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47297 * 59.99698 * 23 21 19 25 25 H 1.48503 * 109.47261 * 299.99879 * 23 21 19 26 26 H 1.48500 * 109.47454 * 179.97438 * 23 21 19 27 27 C 1.48243 * 108.42911 * 24.63827 * 14 13 11 28 28 C 1.51440 * 110.00993 * 157.36060 * 6 5 3 29 29 H 1.09002 * 109.86816 * 65.23932 * 28 6 5 30 30 H 1.09001 * 109.47296 * 299.99663 * 1 2 3 31 31 H 1.08992 * 109.47165 * 59.99917 * 1 2 3 32 32 H 1.09004 * 109.47177 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47237 * 239.99563 * 2 1 3 34 34 H 1.09003 * 109.46844 * 120.00375 * 2 1 3 35 35 H 0.96996 * 119.99417 * 0.02562 * 5 3 2 36 36 H 1.09004 * 109.04095 * 62.77235 * 8 6 5 37 37 H 1.08996 * 108.98736 * 303.85384 * 8 6 5 38 38 H 1.08997 * 109.03360 * 293.47740 * 9 8 6 39 39 H 1.09003 * 109.03204 * 174.62237 * 9 8 6 40 40 H 1.08996 * 109.94180 * 183.08462 * 10 9 8 41 41 H 1.08997 * 110.01711 * 61.87861 * 10 9 8 42 42 H 1.09003 * 110.62905 * 85.62506 * 13 11 10 43 43 H 1.08996 * 110.76372 * 322.66915 * 13 11 10 44 44 H 1.09004 * 109.47077 * 60.00506 * 17 15 14 45 45 H 1.08997 * 109.47267 * 300.00260 * 17 15 14 46 46 H 0.97001 * 119.99591 * 359.97438 * 22 21 19 47 47 H 1.09004 * 110.16852 * 122.02586 * 27 14 13 48 48 H 1.08998 * 110.17095 * 243.82369 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3574 1.6671 0.0005 6 6 3.8457 3.0482 0.0011 7 1 3.1893 3.6741 0.6057 8 6 3.9023 3.5853 -1.4394 9 6 4.4833 4.9946 -1.4923 10 6 5.8555 5.0704 -0.8016 11 6 5.6604 4.5998 0.6264 12 1 4.8959 5.1965 1.1240 13 6 6.9165 4.5025 1.4956 14 7 6.5429 3.5048 2.5325 15 6 7.0887 3.4026 3.7605 16 8 6.7027 2.5448 4.5261 17 6 8.1787 4.3539 4.1823 18 16 8.6999 3.9637 5.8711 19 6 9.9420 5.1924 6.0997 20 1 10.1657 5.8884 5.3047 21 6 10.6336 5.2650 7.3008 22 7 10.3620 4.4157 8.2691 23 14 11.9499 6.5681 7.5434 24 1 11.3451 7.9163 7.3955 25 1 13.0165 6.3898 6.5255 26 1 12.5343 6.4346 8.9020 27 6 5.4727 2.6377 1.9845 28 6 5.2565 3.0989 0.5493 29 1 5.9331 2.5665 -0.1192 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 3.9877 0.9298 0.0005 36 1 2.8939 3.6006 -1.8531 37 1 4.5233 2.9218 -2.0411 38 1 3.7971 5.6809 -0.9960 39 1 4.5927 5.2951 -2.5344 40 1 6.2186 6.0981 -0.8079 41 1 6.5669 4.4219 -1.3129 42 1 7.1424 5.4657 1.9531 43 1 7.7650 4.1484 0.9102 44 1 7.8027 5.3764 4.1457 45 1 9.0287 4.2549 3.5073 46 1 9.6783 3.7393 8.1433 47 1 5.7881 1.5944 2.0027 48 1 4.5554 2.7638 2.5596 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001287986499.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:10 Heat of formation + Delta-G solvation = -119.691669 kcal Electronic energy + Delta-G solvation = -27458.375176 eV Core-core repulsion = 23637.142474 eV Total energy + Delta-G solvation = -3821.232702 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.93197 -40.67700 -39.63298 -36.78698 -35.22594 -34.75901 -33.71187 -32.57736 -31.35841 -30.37792 -28.27466 -27.11256 -26.04191 -24.96682 -22.48531 -22.15791 -21.49673 -20.90269 -20.85373 -20.11817 -18.34911 -17.91358 -17.46060 -17.06796 -16.93543 -16.55235 -16.19435 -15.72363 -15.67107 -15.54623 -15.29602 -14.96863 -14.62709 -14.47595 -14.37890 -14.11931 -13.94405 -13.79146 -13.51757 -13.45416 -13.28209 -13.05273 -12.76173 -12.73704 -12.65760 -12.24162 -12.04236 -11.95710 -11.89301 -11.64037 -11.55642 -11.50105 -11.40995 -11.10367 -11.09242 -10.74605 -10.34533 -10.07280 -9.84094 -8.93622 -8.90100 -6.29513 1.11181 1.43788 1.51200 1.60623 1.65200 1.80501 1.90736 2.17948 2.33236 3.01399 3.03553 3.15961 3.43107 3.55105 3.70089 3.78370 4.00956 4.05889 4.11794 4.16070 4.21923 4.24888 4.27240 4.29582 4.32336 4.39447 4.42908 4.48039 4.59983 4.67625 4.73537 4.78474 4.91627 4.97239 5.04137 5.05053 5.12358 5.14678 5.18394 5.24758 5.30905 5.32066 5.47037 5.54434 5.62921 6.13294 6.24771 6.55428 6.97586 7.05352 7.27435 8.49704 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018800 B = 0.002248 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.032157 B =12452.983880 C =13680.993935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.141 4.141 3 C 0.505 3.495 4 O -0.588 6.588 5 N -0.719 5.719 6 C 0.165 3.835 7 H 0.062 0.938 8 C -0.119 4.119 9 C -0.113 4.113 10 C -0.097 4.097 11 C -0.093 4.093 12 H 0.077 0.923 13 C 0.101 3.899 14 N -0.619 5.619 15 C 0.544 3.456 16 O -0.569 6.569 17 C -0.099 4.099 18 S -0.198 6.198 19 C -0.612 4.612 20 H 0.076 0.924 21 C -0.020 4.020 22 N -0.913 5.913 23 Si 1.137 2.863 24 H -0.263 1.263 25 H -0.261 1.261 26 H -0.281 1.281 27 C 0.120 3.880 28 C -0.099 4.099 29 H 0.116 0.884 30 H 0.040 0.960 31 H 0.048 0.952 32 H 0.082 0.918 33 H 0.121 0.879 34 H 0.110 0.890 35 H 0.416 0.584 36 H 0.051 0.949 37 H 0.082 0.918 38 H 0.053 0.947 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.097 0.903 44 H 0.107 0.893 45 H 0.111 0.889 46 H 0.260 0.740 47 H 0.073 0.927 48 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.582 -3.720 -28.664 31.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.180 4.180 3 C 0.294 3.706 4 O -0.469 6.469 5 N -0.370 5.370 6 C 0.060 3.940 7 H 0.080 0.920 8 C -0.157 4.157 9 C -0.151 4.151 10 C -0.135 4.135 11 C -0.112 4.112 12 H 0.096 0.904 13 C -0.020 4.020 14 N -0.354 5.354 15 C 0.332 3.668 16 O -0.448 6.448 17 C -0.250 4.250 18 S 0.029 5.971 19 C -0.759 4.759 20 H 0.095 0.905 21 C -0.223 4.223 22 N -0.548 5.548 23 Si 0.954 3.046 24 H -0.188 1.188 25 H -0.186 1.186 26 H -0.206 1.206 27 C -0.002 4.002 28 C -0.118 4.118 29 H 0.134 0.866 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.101 0.899 33 H 0.139 0.861 34 H 0.128 0.872 35 H 0.253 0.747 36 H 0.069 0.931 37 H 0.101 0.899 38 H 0.072 0.928 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.106 0.894 42 H 0.103 0.897 43 H 0.115 0.885 44 H 0.125 0.875 45 H 0.130 0.870 46 H 0.071 0.929 47 H 0.091 0.909 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.611 -3.787 -26.399 29.501 hybrid contribution -0.734 -0.045 -1.223 1.427 sum -13.345 -3.832 -27.623 30.916 Atomic orbital electron populations 1.21530 0.93866 1.02476 1.01714 1.21705 0.97956 0.91841 1.06515 1.21451 0.82153 0.92794 0.74239 1.90691 1.56501 1.48246 1.51415 1.46057 1.07162 1.08893 1.74905 1.20599 0.92763 0.83311 0.97318 0.91987 1.21852 1.01242 0.97745 0.94880 1.21486 0.96211 0.95573 1.01856 1.21367 0.97553 1.02995 0.91581 1.22053 0.96648 0.95092 0.97446 0.90433 1.22449 0.98547 0.92264 0.88730 1.49058 1.38532 1.34898 1.12943 1.19749 0.82258 0.84100 0.80669 1.90691 1.63430 1.37736 1.52911 1.23146 0.99975 1.02006 0.99856 1.85093 1.49195 1.47713 1.15090 1.24012 1.24997 1.20107 1.06809 0.90540 1.27876 1.01809 1.01809 0.90820 1.70923 1.31691 1.17628 1.34576 0.82719 0.72629 0.72300 0.76927 1.18786 1.18566 1.20592 1.21622 0.89630 0.94667 0.94293 1.22071 0.97323 0.98106 0.94285 0.86553 0.94086 0.93254 0.89872 0.86051 0.87186 0.74749 0.93056 0.89925 0.92831 0.89894 0.89884 0.89392 0.89708 0.88457 0.87501 0.87049 0.92917 0.90905 0.93476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.20 71.98 0.66 -1.13 16 2 C -0.14 -1.42 6.42 29.85 0.19 -1.22 16 3 C 0.51 8.76 7.80 87.66 0.68 9.45 16 4 O -0.59 -15.87 15.68 -3.04 -0.05 -15.92 16 5 N -0.72 -9.07 5.03 -443.64 -2.23 -11.30 16 6 C 0.17 2.38 2.18 44.77 0.10 2.48 16 7 H 0.06 1.31 7.56 -2.39 -0.02 1.29 16 8 C -0.12 -1.34 5.44 30.72 0.17 -1.17 16 9 C -0.11 -1.05 5.84 30.71 0.18 -0.87 16 10 C -0.10 -0.76 5.71 30.42 0.17 -0.59 16 11 C -0.09 -1.21 2.48 -10.32 -0.03 -1.24 16 12 H 0.08 1.25 8.07 -2.39 -0.02 1.23 16 13 C 0.10 1.74 6.34 85.98 0.55 2.29 16 14 N -0.62 -16.60 3.38 -812.95 -2.75 -19.35 16 15 C 0.54 20.96 7.88 87.66 0.69 21.65 16 16 O -0.57 -27.29 16.20 -3.05 -0.05 -27.34 16 17 C -0.10 -3.99 5.19 71.23 0.37 -3.62 16 18 S -0.20 -11.04 19.60 -56.49 -1.11 -12.14 16 19 C -0.61 -35.33 9.50 67.95 0.65 -34.69 16 20 H 0.08 4.11 7.80 -2.91 -0.02 4.09 16 21 C -0.02 -1.17 5.49 84.86 0.47 -0.71 16 22 N -0.91 -58.34 13.67 21.65 0.30 -58.04 16 23 Si 1.14 49.08 29.92 68.60 2.05 51.13 16 24 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 25 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 26 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 27 C 0.12 2.61 6.52 85.81 0.56 3.17 16 28 C -0.10 -1.29 1.81 -10.64 -0.02 -1.31 16 29 H 0.12 1.01 7.92 -2.39 -0.02 0.99 16 30 H 0.04 0.70 8.10 -2.39 -0.02 0.68 16 31 H 0.05 0.75 8.10 -2.39 -0.02 0.73 16 32 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 33 H 0.12 0.54 8.14 -2.39 -0.02 0.53 16 34 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.42 2.85 8.60 -92.71 -0.80 2.05 16 36 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.08 0.57 8.14 -2.39 -0.02 0.56 16 40 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.09 0.46 7.98 -2.39 -0.02 0.44 16 42 H 0.08 1.47 7.54 -2.39 -0.02 1.46 16 43 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.11 3.98 7.88 -2.39 -0.02 3.96 16 45 H 0.11 4.05 8.14 -2.40 -0.02 4.03 16 46 H 0.26 17.31 7.12 -92.71 -0.66 16.65 16 47 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 48 H 0.05 1.23 8.08 -2.39 -0.02 1.21 16 Total: -1.00 -86.13 396.91 1.81 -84.32 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: 0.26 Total: 16.16 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: 5.39 Total: -7.51 kcal Atomic # 7 Polarization: -84.01 SS G_CDS: -4.68 Total: -88.70 kcal Atomic # 8 Polarization: -43.15 SS G_CDS: -0.10 Total: -43.25 kcal Atomic # 14 Polarization: 49.08 SS G_CDS: 2.05 Total: 51.13 kcal Atomic # 16 Polarization: -11.04 SS G_CDS: -1.11 Total: -12.14 kcal Total: -86.13 1.81 -84.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001287986499.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.376 kcal (2) G-P(sol) polarization free energy of solvation -86.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds