Wall clock time and date at job start Sat Apr 11 2020 06:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.46562 * 2 1 4 4 O 1.21278 * 120.00616 * 0.02562 * 3 2 1 5 5 N 1.34785 * 119.99620 * 180.02562 * 3 2 1 6 6 C 1.46499 * 119.99736 * 180.02562 * 5 3 2 7 7 H 1.08996 * 109.93065 * 36.40805 * 6 5 3 8 8 C 1.53842 * 109.93624 * 275.15898 * 6 5 3 9 9 C 1.52522 * 111.66584 * 297.81420 * 8 6 5 10 10 C 1.53808 * 111.70721 * 305.96324 * 9 8 6 11 11 C 1.51302 * 107.43835 * 57.28407 * 10 9 8 12 12 H 1.08998 * 109.97568 * 55.69663 * 11 10 9 13 13 C 1.53318 * 116.99163 * 184.32705 * 11 10 9 14 14 N 1.48663 * 103.31570 * 156.45424 * 13 11 10 15 15 C 1.34774 * 125.78340 * 155.51665 * 14 13 11 16 16 O 1.21279 * 120.00530 * 179.69420 * 15 14 13 17 17 C 1.50705 * 120.00066 * 359.69691 * 15 14 13 18 18 S 1.81001 * 109.47400 * 179.97438 * 17 15 14 19 19 C 1.76198 * 99.99925 * 179.97438 * 18 17 15 20 20 H 1.07999 * 120.00640 * 0.02562 * 19 18 17 21 21 C 1.38798 * 119.99682 * 179.97438 * 19 18 17 22 22 N 1.31631 * 120.00113 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99893 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47203 * 180.02562 * 23 21 19 25 25 H 1.48500 * 109.47146 * 59.99856 * 23 21 19 26 26 H 1.48497 * 109.47072 * 299.99891 * 23 21 19 27 27 C 1.48234 * 108.43245 * 335.25652 * 14 13 11 28 28 C 1.51443 * 109.93770 * 157.56743 * 6 5 3 29 29 H 1.09004 * 109.87484 * 174.08215 * 28 6 5 30 30 H 1.09000 * 109.46962 * 299.99225 * 1 2 3 31 31 H 1.08993 * 109.47547 * 59.99558 * 1 2 3 32 32 H 1.09000 * 109.46886 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46962 * 240.00775 * 2 1 3 34 34 H 1.08993 * 109.47547 * 120.00442 * 2 1 3 35 35 H 0.97001 * 119.99787 * 359.97438 * 5 3 2 36 36 H 1.09003 * 109.04263 * 58.38179 * 8 6 5 37 37 H 1.09000 * 109.03786 * 177.32871 * 8 6 5 38 38 H 1.09003 * 109.03195 * 66.53516 * 9 8 6 39 39 H 1.08997 * 109.03775 * 185.38463 * 9 8 6 40 40 H 1.08995 * 109.94532 * 176.90890 * 10 9 8 41 41 H 1.08997 * 109.94431 * 298.07085 * 10 9 8 42 42 H 1.09008 * 110.76964 * 37.97208 * 13 11 10 43 43 H 1.08996 * 110.60612 * 274.86354 * 13 11 10 44 44 H 1.08998 * 109.47246 * 59.99682 * 17 15 14 45 45 H 1.09004 * 109.46696 * 300.00049 * 17 15 14 46 46 H 0.96994 * 120.00171 * 359.97438 * 22 21 19 47 47 H 1.09004 * 110.17152 * 116.18054 * 27 14 13 48 48 H 1.09000 * 110.17311 * 237.98063 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 1.2441 2.3427 0.0005 5 7 3.3573 1.6672 -0.0005 6 6 3.8455 3.0485 0.0000 7 1 3.1921 3.6732 0.6089 8 6 3.8970 3.5872 -1.4400 9 6 4.8666 2.7890 -2.3055 10 6 6.2670 2.7176 -1.6734 11 6 6.1131 2.1047 -0.2987 12 1 5.6161 1.1376 -0.3756 13 6 7.3725 2.0237 0.5720 14 7 6.8295 1.9598 1.9544 15 6 7.4561 1.4298 3.0235 16 8 6.9155 1.4384 4.1091 17 6 8.8285 0.8265 2.8700 18 16 9.3972 0.2052 4.4721 19 6 10.9764 -0.4267 4.0122 20 1 11.3100 -0.3531 2.9877 21 6 11.7920 -1.0180 4.9669 22 7 11.3856 -1.1073 6.2157 23 14 13.4666 -1.6873 4.4795 24 1 14.1355 -2.2644 5.6731 25 1 14.2982 -0.5871 3.9288 26 1 13.2969 -2.7430 3.4490 27 6 5.4848 2.5835 1.9591 28 6 5.2586 3.0965 0.5426 29 1 5.6587 4.1058 0.4456 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 3.9877 0.9299 -0.0005 36 1 2.9001 3.5298 -1.8771 37 1 4.2162 4.6292 -1.4186 38 1 4.4811 1.7772 -2.4307 39 1 4.9422 3.2627 -3.2843 40 1 6.9203 2.0967 -2.2863 41 1 6.6853 3.7200 -1.5821 42 1 7.9897 2.9128 0.4426 43 1 7.9414 1.1231 0.3409 44 1 9.5212 1.5867 2.5089 45 1 8.7862 0.0046 2.1553 46 1 10.5163 -0.7595 6.4689 47 1 4.7276 1.8426 2.2158 48 1 5.4568 3.4114 2.6676 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001287986500.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:13 Heat of formation + Delta-G solvation = -88.065088 kcal Electronic energy + Delta-G solvation = -27832.661594 eV Core-core repulsion = 24012.800323 eV Total energy + Delta-G solvation = -3819.861271 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.36608 -39.63794 -38.47480 -35.80314 -34.11488 -33.11707 -32.55606 -31.44271 -30.93350 -29.13522 -27.46219 -25.38122 -24.85688 -24.19937 -21.96241 -21.71772 -20.96699 -19.50064 -19.44416 -18.24481 -17.65324 -16.77234 -16.44545 -15.96224 -15.92813 -15.49059 -15.16644 -14.76903 -14.63689 -14.26837 -13.99402 -13.85183 -13.67852 -13.53591 -13.14882 -12.88356 -12.79636 -12.74036 -12.44451 -12.32823 -12.20302 -12.09427 -12.04788 -11.90890 -11.85321 -11.50096 -11.25853 -11.00341 -10.94316 -10.93058 -10.36413 -10.19752 -10.10379 -9.60770 -9.54958 -9.37949 -9.04250 -8.65723 -8.25300 -6.70696 -6.64759 -4.03105 2.36255 2.69247 2.84604 2.93040 3.28970 3.35525 3.39949 3.55617 3.77471 4.15017 4.20199 4.22783 4.36079 4.54508 4.66592 4.69413 4.75622 4.76699 4.87601 4.90251 4.96108 5.03785 5.09342 5.17276 5.19733 5.21670 5.33729 5.37621 5.42768 5.46509 5.50076 5.57034 5.59300 5.60304 5.68375 5.71844 5.76103 5.80099 5.81720 5.89290 5.96296 5.96673 6.16882 6.23378 7.15929 7.51355 7.88495 7.92981 8.41433 8.47317 9.24347 10.79137 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016740 B = 0.002394 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.276074 B =11695.406301 C =12410.258611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.147 4.147 3 C 0.513 3.487 4 O -0.541 6.541 5 N -0.725 5.725 6 C 0.163 3.837 7 H 0.094 0.906 8 C -0.128 4.128 9 C -0.115 4.115 10 C -0.106 4.106 11 C -0.106 4.106 12 H 0.083 0.917 13 C 0.111 3.889 14 N -0.629 5.629 15 C 0.547 3.453 16 O -0.515 6.515 17 C -0.123 4.123 18 S -0.117 6.117 19 C -0.607 4.607 20 H 0.065 0.935 21 C 0.035 3.965 22 N -0.883 5.883 23 Si 1.084 2.916 24 H -0.278 1.278 25 H -0.285 1.285 26 H -0.285 1.285 27 C 0.120 3.880 28 C -0.115 4.115 29 H 0.099 0.901 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.400 0.600 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.082 0.918 44 H 0.091 0.909 45 H 0.091 0.909 46 H 0.278 0.722 47 H 0.068 0.932 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.063 6.661 -21.179 27.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.187 4.187 3 C 0.300 3.700 4 O -0.418 6.418 5 N -0.379 5.379 6 C 0.058 3.942 7 H 0.112 0.888 8 C -0.166 4.166 9 C -0.153 4.153 10 C -0.144 4.144 11 C -0.125 4.125 12 H 0.101 0.899 13 C -0.012 4.012 14 N -0.367 5.367 15 C 0.335 3.665 16 O -0.389 6.389 17 C -0.274 4.274 18 S 0.110 5.890 19 C -0.755 4.755 20 H 0.084 0.916 21 C -0.175 4.175 22 N -0.517 5.517 23 Si 0.910 3.090 24 H -0.203 1.203 25 H -0.211 1.211 26 H -0.211 1.211 27 C -0.003 4.003 28 C -0.135 4.135 29 H 0.117 0.883 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.237 0.763 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.100 0.900 44 H 0.109 0.891 45 H 0.109 0.891 46 H 0.090 0.910 47 H 0.086 0.914 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.059 6.547 -18.855 25.618 hybrid contribution -0.196 0.395 -2.062 2.109 sum -16.255 6.942 -20.917 27.385 Atomic orbital electron populations 1.21516 0.92930 1.01647 1.03297 1.21660 0.98799 0.93802 1.04484 1.20810 0.82047 0.91904 0.75220 1.90697 1.55304 1.46554 1.49222 1.46269 1.07235 1.08667 1.75750 1.20546 0.93691 0.83448 0.96530 0.88814 1.21919 1.00202 0.99880 0.94641 1.21483 0.94363 1.00727 0.98692 1.21303 0.97233 1.01327 0.94499 1.22099 0.96201 0.99177 0.95033 0.89914 1.22104 0.95576 1.02709 0.80833 1.49101 1.18008 1.60905 1.08669 1.20015 0.86805 0.77121 0.82565 1.90719 1.66758 1.56264 1.25199 1.23288 0.95070 1.03037 1.06047 1.84849 1.21347 1.76024 1.06815 1.23682 1.02856 1.48919 1.00056 0.91634 1.26062 1.04220 0.94418 0.92837 1.70798 1.22079 1.41565 1.17302 0.83330 0.73592 0.76307 0.75778 1.20256 1.21121 1.21136 1.21508 0.84951 0.97874 0.95949 1.22209 0.95619 1.01087 0.94567 0.88321 0.91932 0.92080 0.92054 0.88981 0.88756 0.76288 0.91186 0.90973 0.92152 0.91662 0.91067 0.91117 0.90804 0.89986 0.89068 0.89099 0.90971 0.91390 0.91038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.20 37.16 0.34 -0.64 16 2 C -0.15 -0.97 6.42 -27.88 -0.18 -1.15 16 3 C 0.51 4.73 7.80 -10.98 -0.09 4.64 16 4 O -0.54 -6.97 15.68 5.56 0.09 -6.89 16 5 N -0.72 -5.43 4.20 -54.15 -0.23 -5.66 16 6 C 0.16 1.24 2.59 -68.28 -0.18 1.06 16 7 H 0.09 0.87 7.65 -51.93 -0.40 0.47 16 8 C -0.13 -0.83 5.51 -26.54 -0.15 -0.98 16 9 C -0.12 -0.62 5.65 -26.56 -0.15 -0.77 16 10 C -0.11 -0.56 5.69 -27.17 -0.15 -0.71 16 11 C -0.11 -0.72 2.38 -89.92 -0.21 -0.93 16 12 H 0.08 0.54 5.88 -51.93 -0.31 0.24 16 13 C 0.11 1.04 6.37 -2.68 -0.02 1.02 16 14 N -0.63 -8.44 3.38 -170.71 -0.58 -9.02 16 15 C 0.55 10.27 7.88 -10.98 -0.09 10.19 16 16 O -0.52 -11.82 16.20 5.56 0.09 -11.73 16 17 C -0.12 -2.48 5.18 36.01 0.19 -2.30 16 18 S -0.12 -3.14 19.60 -107.50 -2.11 -5.24 16 19 C -0.61 -17.35 9.50 30.94 0.29 -17.05 16 20 H 0.07 1.78 7.80 -52.49 -0.41 1.38 16 21 C 0.04 1.02 5.49 -17.43 -0.10 0.92 16 22 N -0.88 -27.41 13.67 55.49 0.76 -26.65 16 23 Si 1.08 24.67 29.92 -169.99 -5.09 19.59 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 26 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 27 C 0.12 1.35 6.56 -3.43 -0.02 1.33 16 28 C -0.12 -0.87 2.08 -90.35 -0.19 -1.06 16 29 H 0.10 0.69 7.95 -51.93 -0.41 0.27 16 30 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 31 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.40 2.51 6.35 -40.82 -0.26 2.25 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.34 8.01 -51.93 -0.42 -0.07 16 39 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.07 0.36 8.00 -51.93 -0.42 -0.05 16 42 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 43 H 0.08 0.76 7.54 -51.93 -0.39 0.37 16 44 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 45 H 0.09 1.69 7.89 -51.91 -0.41 1.28 16 46 H 0.28 8.81 7.12 -40.82 -0.29 8.52 16 47 H 0.07 0.81 7.72 -51.93 -0.40 0.41 16 48 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 391.82 15.07 5.90 5.90 Total: -1.00 -36.44 391.82 -9.82 -46.26 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -7.97 Total: -0.13 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: -0.69 Total: -6.44 kcal Atomic # 7 Polarization: -41.28 SS G_CDS: -0.05 Total: -41.32 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: 0.18 Total: -18.62 kcal Atomic # 14 Polarization: 24.67 SS G_CDS: -5.09 Total: 19.59 kcal Atomic # 16 Polarization: -3.14 SS G_CDS: -2.11 Total: -5.24 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.44 -9.82 -46.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001287986500.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.801 kcal (2) G-P(sol) polarization free energy of solvation -36.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds