Wall clock time and date at job start Sat Apr 11 2020 06:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.46562 * 2 1 4 4 O 1.21278 * 120.00616 * 0.02562 * 3 2 1 5 5 N 1.34785 * 119.99620 * 180.02562 * 3 2 1 6 6 C 1.46499 * 119.99736 * 180.02562 * 5 3 2 7 7 H 1.08996 * 109.93065 * 36.40805 * 6 5 3 8 8 C 1.53842 * 109.93624 * 275.15898 * 6 5 3 9 9 C 1.52522 * 111.66584 * 297.81420 * 8 6 5 10 10 C 1.53808 * 111.70721 * 305.96324 * 9 8 6 11 11 C 1.51302 * 107.43835 * 57.28407 * 10 9 8 12 12 H 1.08998 * 109.97568 * 55.69663 * 11 10 9 13 13 C 1.53318 * 116.99163 * 184.32705 * 11 10 9 14 14 N 1.48663 * 103.31570 * 156.45424 * 13 11 10 15 15 C 1.34774 * 125.78340 * 155.51665 * 14 13 11 16 16 O 1.21279 * 120.00530 * 179.69420 * 15 14 13 17 17 C 1.50705 * 120.00066 * 359.69691 * 15 14 13 18 18 S 1.81001 * 109.47400 * 179.97438 * 17 15 14 19 19 C 1.76198 * 99.99925 * 179.97438 * 18 17 15 20 20 H 1.07999 * 120.00640 * 0.02562 * 19 18 17 21 21 C 1.38798 * 119.99682 * 179.97438 * 19 18 17 22 22 N 1.31631 * 120.00113 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99893 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47203 * 180.02562 * 23 21 19 25 25 H 1.48500 * 109.47146 * 59.99856 * 23 21 19 26 26 H 1.48497 * 109.47072 * 299.99891 * 23 21 19 27 27 C 1.48234 * 108.43245 * 335.25652 * 14 13 11 28 28 C 1.51443 * 109.93770 * 157.56743 * 6 5 3 29 29 H 1.09004 * 109.87484 * 174.08215 * 28 6 5 30 30 H 1.09000 * 109.46962 * 299.99225 * 1 2 3 31 31 H 1.08993 * 109.47547 * 59.99558 * 1 2 3 32 32 H 1.09000 * 109.46886 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46962 * 240.00775 * 2 1 3 34 34 H 1.08993 * 109.47547 * 120.00442 * 2 1 3 35 35 H 0.97001 * 119.99787 * 359.97438 * 5 3 2 36 36 H 1.09003 * 109.04263 * 58.38179 * 8 6 5 37 37 H 1.09000 * 109.03786 * 177.32871 * 8 6 5 38 38 H 1.09003 * 109.03195 * 66.53516 * 9 8 6 39 39 H 1.08997 * 109.03775 * 185.38463 * 9 8 6 40 40 H 1.08995 * 109.94532 * 176.90890 * 10 9 8 41 41 H 1.08997 * 109.94431 * 298.07085 * 10 9 8 42 42 H 1.09008 * 110.76964 * 37.97208 * 13 11 10 43 43 H 1.08996 * 110.60612 * 274.86354 * 13 11 10 44 44 H 1.08998 * 109.47246 * 59.99682 * 17 15 14 45 45 H 1.09004 * 109.46696 * 300.00049 * 17 15 14 46 46 H 0.96994 * 120.00171 * 359.97438 * 22 21 19 47 47 H 1.09004 * 110.17152 * 116.18054 * 27 14 13 48 48 H 1.09000 * 110.17311 * 237.98063 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 1.2441 2.3427 0.0005 5 7 3.3573 1.6672 -0.0005 6 6 3.8455 3.0485 0.0000 7 1 3.1921 3.6732 0.6089 8 6 3.8970 3.5872 -1.4400 9 6 4.8666 2.7890 -2.3055 10 6 6.2670 2.7176 -1.6734 11 6 6.1131 2.1047 -0.2987 12 1 5.6161 1.1376 -0.3756 13 6 7.3725 2.0237 0.5720 14 7 6.8295 1.9598 1.9544 15 6 7.4561 1.4298 3.0235 16 8 6.9155 1.4384 4.1091 17 6 8.8285 0.8265 2.8700 18 16 9.3972 0.2052 4.4721 19 6 10.9764 -0.4267 4.0122 20 1 11.3100 -0.3531 2.9877 21 6 11.7920 -1.0180 4.9669 22 7 11.3856 -1.1073 6.2157 23 14 13.4666 -1.6873 4.4795 24 1 14.1355 -2.2644 5.6731 25 1 14.2982 -0.5871 3.9288 26 1 13.2969 -2.7430 3.4490 27 6 5.4848 2.5835 1.9591 28 6 5.2586 3.0965 0.5426 29 1 5.6587 4.1058 0.4456 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 3.9877 0.9299 -0.0005 36 1 2.9001 3.5298 -1.8771 37 1 4.2162 4.6292 -1.4186 38 1 4.4811 1.7772 -2.4307 39 1 4.9422 3.2627 -3.2843 40 1 6.9203 2.0967 -2.2863 41 1 6.6853 3.7200 -1.5821 42 1 7.9897 2.9128 0.4426 43 1 7.9414 1.1231 0.3409 44 1 9.5212 1.5867 2.5089 45 1 8.7862 0.0046 2.1553 46 1 10.5163 -0.7595 6.4689 47 1 4.7276 1.8426 2.2158 48 1 5.4568 3.4114 2.6676 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001287986500.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:12 Heat of formation + Delta-G solvation = -112.208853 kcal Electronic energy + Delta-G solvation = -27833.708546 eV Core-core repulsion = 24012.800323 eV Total energy + Delta-G solvation = -3820.908223 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.13343 -40.64243 -39.58984 -36.78682 -34.78087 -34.74491 -33.71639 -32.57681 -31.60621 -30.39382 -28.27832 -27.10257 -26.05925 -24.99388 -22.61255 -22.33980 -21.67233 -20.89249 -20.13778 -20.10320 -18.43572 -17.93215 -17.44888 -17.11828 -16.70867 -16.61509 -16.15046 -15.81947 -15.68860 -15.59197 -15.24671 -14.99584 -14.61076 -14.43978 -14.30941 -14.10327 -13.95130 -13.65336 -13.50391 -13.41128 -13.29647 -12.94980 -12.78868 -12.76174 -12.72690 -12.64366 -12.06363 -11.95137 -11.90169 -11.61410 -11.51304 -11.46991 -11.09404 -11.08346 -10.93986 -10.86474 -10.32755 -10.07731 -9.81588 -8.92364 -8.88807 -6.28295 1.12726 1.45765 1.52164 1.61419 1.65194 1.81168 1.91781 2.21825 2.34311 3.02609 3.02780 3.14733 3.44056 3.57870 3.69016 3.76518 3.95517 4.09521 4.14656 4.15777 4.19534 4.23467 4.24381 4.31558 4.35919 4.39951 4.44859 4.56607 4.67086 4.69048 4.73975 4.79441 4.91816 4.95520 4.98571 5.03381 5.11207 5.17279 5.19014 5.28072 5.29527 5.35267 5.47496 5.57506 5.64168 6.14408 6.26757 6.51312 6.99703 7.06589 7.25053 8.51024 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016740 B = 0.002394 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.276074 B =11695.406301 C =12410.258611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.144 4.144 3 C 0.508 3.492 4 O -0.584 6.584 5 N -0.716 5.716 6 C 0.164 3.836 7 H 0.073 0.927 8 C -0.121 4.121 9 C -0.110 4.110 10 C -0.098 4.098 11 C -0.093 4.093 12 H 0.089 0.911 13 C 0.101 3.899 14 N -0.617 5.617 15 C 0.544 3.456 16 O -0.570 6.570 17 C -0.097 4.097 18 S -0.199 6.199 19 C -0.611 4.611 20 H 0.077 0.923 21 C -0.020 4.020 22 N -0.914 5.914 23 Si 1.137 2.863 24 H -0.282 1.282 25 H -0.262 1.262 26 H -0.261 1.261 27 C 0.117 3.883 28 C -0.102 4.102 29 H 0.113 0.887 30 H 0.042 0.958 31 H 0.050 0.950 32 H 0.080 0.920 33 H 0.118 0.882 34 H 0.105 0.895 35 H 0.408 0.592 36 H 0.053 0.947 37 H 0.082 0.918 38 H 0.060 0.940 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.109 0.891 45 H 0.111 0.889 46 H 0.260 0.740 47 H 0.059 0.941 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.790 6.448 -24.904 29.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.184 4.184 3 C 0.296 3.704 4 O -0.464 6.464 5 N -0.370 5.370 6 C 0.059 3.941 7 H 0.091 0.909 8 C -0.160 4.160 9 C -0.148 4.148 10 C -0.136 4.136 11 C -0.113 4.113 12 H 0.107 0.893 13 C -0.020 4.020 14 N -0.351 5.351 15 C 0.332 3.668 16 O -0.449 6.449 17 C -0.249 4.249 18 S 0.027 5.973 19 C -0.758 4.758 20 H 0.095 0.905 21 C -0.223 4.223 22 N -0.549 5.549 23 Si 0.954 3.046 24 H -0.207 1.207 25 H -0.187 1.187 26 H -0.186 1.186 27 C -0.006 4.006 28 C -0.121 4.121 29 H 0.131 0.869 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.136 0.864 34 H 0.123 0.877 35 H 0.247 0.753 36 H 0.071 0.929 37 H 0.101 0.899 38 H 0.079 0.921 39 H 0.094 0.906 40 H 0.103 0.897 41 H 0.098 0.902 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.127 0.873 45 H 0.130 0.870 46 H 0.071 0.929 47 H 0.077 0.923 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.795 6.352 -22.659 27.797 hybrid contribution -0.717 0.546 -0.984 1.335 sum -15.512 6.897 -23.643 29.107 Atomic orbital electron populations 1.21512 0.93553 1.02442 1.01879 1.21713 0.98246 0.92220 1.06185 1.21323 0.82134 0.92600 0.74320 1.90680 1.56378 1.48010 1.51359 1.46233 1.06997 1.08976 1.74833 1.20517 0.93055 0.83319 0.97244 0.90914 1.21853 0.99850 1.00756 0.93509 1.21448 0.93957 1.00558 0.98810 1.21285 0.97308 1.01933 0.93064 1.22073 0.94381 0.99339 0.95476 0.89312 1.22479 0.96995 1.03999 0.78487 1.49025 1.18430 1.58583 1.09108 1.19765 0.86434 0.77507 0.83057 1.90699 1.67796 1.58799 1.27582 1.23144 0.96151 1.03956 1.01627 1.85132 1.22013 1.76951 1.13172 1.24007 1.03016 1.48229 1.00562 0.90484 1.27861 1.08087 0.94158 0.92193 1.70919 1.21605 1.43538 1.18883 0.82720 0.68988 0.76910 0.75970 1.20710 1.18712 1.18605 1.21628 0.83540 0.97124 0.98273 1.22105 0.95910 1.02013 0.92076 0.86868 0.93855 0.93036 0.90076 0.86359 0.87712 0.75308 0.92859 0.89932 0.92146 0.90568 0.89693 0.90225 0.89091 0.89121 0.87311 0.87036 0.92907 0.92288 0.92343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.20 71.98 0.66 -1.22 16 2 C -0.14 -1.70 6.42 29.85 0.19 -1.50 16 3 C 0.51 9.09 7.80 87.66 0.68 9.77 16 4 O -0.58 -15.42 15.68 -3.02 -0.05 -15.47 16 5 N -0.72 -9.79 4.20 -443.60 -1.86 -11.66 16 6 C 0.16 2.28 2.59 44.77 0.12 2.39 16 7 H 0.07 1.36 7.65 -2.39 -0.02 1.34 16 8 C -0.12 -1.32 5.51 30.72 0.17 -1.15 16 9 C -0.11 -0.80 5.65 30.71 0.17 -0.62 16 10 C -0.10 -0.60 5.69 30.31 0.17 -0.43 16 11 C -0.09 -0.94 2.38 -10.34 -0.02 -0.96 16 12 H 0.09 0.83 5.88 -2.39 -0.01 0.82 16 13 C 0.10 1.55 6.37 86.07 0.55 2.10 16 14 N -0.62 -15.59 3.38 -812.38 -2.75 -18.34 16 15 C 0.54 20.29 7.88 87.66 0.69 20.98 16 16 O -0.57 -26.97 16.20 -3.03 -0.05 -27.02 16 17 C -0.10 -3.82 5.18 71.24 0.37 -3.45 16 18 S -0.20 -10.96 19.60 -56.49 -1.11 -12.06 16 19 C -0.61 -34.73 9.50 67.95 0.65 -34.08 16 20 H 0.08 4.06 7.80 -2.91 -0.02 4.04 16 21 C -0.02 -1.15 5.49 84.86 0.47 -0.69 16 22 N -0.91 -57.98 13.67 21.65 0.30 -57.68 16 23 Si 1.14 48.43 29.92 68.60 2.05 50.49 16 24 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 25 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 26 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 27 C 0.12 2.53 6.56 85.83 0.56 3.10 16 28 C -0.10 -1.32 2.08 -10.62 -0.02 -1.34 16 29 H 0.11 1.23 7.95 -2.38 -0.02 1.21 16 30 H 0.04 0.75 8.10 -2.39 -0.02 0.73 16 31 H 0.05 0.80 8.10 -2.39 -0.02 0.78 16 32 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.10 1.04 8.14 -2.39 -0.02 1.03 16 35 H 0.41 4.23 6.35 -92.71 -0.59 3.64 16 36 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.06 0.47 8.01 -2.39 -0.02 0.45 16 39 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 41 H 0.08 0.42 8.00 -2.39 -0.02 0.40 16 42 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 43 H 0.09 1.31 7.54 -2.39 -0.02 1.29 16 44 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 45 H 0.11 3.89 7.89 -2.39 -0.02 3.87 16 46 H 0.26 17.19 7.12 -92.71 -0.66 16.53 16 47 H 0.06 1.41 7.72 -2.39 -0.02 1.39 16 48 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -83.67 391.82 2.41 -81.26 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: 0.47 Total: 17.60 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: 5.41 Total: -7.11 kcal Atomic # 7 Polarization: -83.37 SS G_CDS: -4.31 Total: -87.68 kcal Atomic # 8 Polarization: -42.39 SS G_CDS: -0.10 Total: -42.49 kcal Atomic # 14 Polarization: 48.43 SS G_CDS: 2.05 Total: 50.49 kcal Atomic # 16 Polarization: -10.96 SS G_CDS: -1.11 Total: -12.06 kcal Total: -83.67 2.41 -81.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001287986500.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.953 kcal (2) G-P(sol) polarization free energy of solvation -83.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds