Wall clock time and date at job start Sat Apr 11 2020 06:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50692 * 120.00080 * 2 1 4 4 C 1.52998 * 109.47693 * 125.27210 * 3 2 1 5 5 C 1.50697 * 109.47194 * 180.02562 * 4 3 2 6 6 O 1.21276 * 120.00408 * 359.97438 * 5 4 3 7 7 N 1.34781 * 119.99746 * 179.97438 * 5 4 3 8 8 C 1.46928 * 120.63015 * 354.65507 * 7 5 4 9 9 C 1.52758 * 109.00933 * 233.58535 * 8 7 5 10 10 C 1.53045 * 109.38577 * 305.59238 * 9 8 7 11 11 C 1.53040 * 109.53702 * 61.23911 * 10 9 8 12 12 H 1.08998 * 109.49461 * 58.58924 * 11 10 9 13 13 N 1.46497 * 109.49437 * 178.68558 * 11 10 9 14 14 C 1.34780 * 120.00086 * 274.83658 * 13 11 10 15 15 O 1.21279 * 119.99817 * 0.02562 * 14 13 11 16 16 C 1.50703 * 120.00149 * 180.02562 * 14 13 11 17 17 S 1.80995 * 109.47139 * 180.02562 * 16 14 13 18 18 C 1.76198 * 100.00056 * 180.02562 * 17 16 14 19 19 H 1.07990 * 119.99914 * 359.97438 * 18 17 16 20 20 C 1.38797 * 120.00141 * 180.02562 * 18 17 16 21 21 N 1.31627 * 120.00052 * 179.97438 * 20 18 17 22 22 Si 1.86808 * 119.99954 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.47113 * 90.00175 * 22 20 18 24 24 H 1.48500 * 109.47104 * 210.00381 * 22 20 18 25 25 H 1.48498 * 109.47015 * 330.00089 * 22 20 18 26 26 C 1.46932 * 120.63039 * 174.94172 * 7 5 4 27 27 H 1.09001 * 109.58360 * 246.29627 * 26 7 5 28 28 C 1.53001 * 109.58417 * 6.57837 * 26 7 5 29 29 H 1.08006 * 120.00129 * 359.73328 * 1 2 3 30 30 H 1.08008 * 119.99969 * 179.72239 * 1 2 3 31 31 H 1.08006 * 120.00129 * 180.26672 * 2 1 3 32 32 H 1.09000 * 109.47179 * 245.27227 * 3 2 1 33 33 H 1.09001 * 109.47547 * 5.26434 * 3 2 1 34 34 H 1.09002 * 109.46576 * 299.99759 * 4 3 2 35 35 H 1.08991 * 109.47564 * 59.99546 * 4 3 2 36 36 H 1.08995 * 109.58622 * 353.42486 * 8 7 5 37 37 H 1.09004 * 109.58089 * 113.84784 * 8 7 5 38 38 H 1.08998 * 109.56542 * 185.55756 * 9 8 7 39 39 H 1.08995 * 109.36214 * 65.50313 * 9 8 7 40 40 H 1.09007 * 109.45717 * 301.21701 * 10 9 8 41 41 H 1.09005 * 109.44874 * 181.25737 * 10 9 8 42 42 H 0.96999 * 120.00408 * 94.84068 * 13 11 10 43 43 H 1.09002 * 109.47054 * 299.99959 * 16 14 13 44 44 H 1.08998 * 109.46900 * 60.00088 * 16 14 13 45 45 H 0.97005 * 119.99747 * 179.97438 * 21 20 18 46 46 H 1.08994 * 109.47124 * 55.72759 * 28 26 7 47 47 H 1.09007 * 109.46710 * 175.72187 * 28 26 7 48 48 H 1.08998 * 109.47082 * 295.72424 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3050 0.0000 4 6 3.0399 1.3303 1.1776 5 6 3.7928 2.6357 1.1779 6 8 3.5708 3.4640 0.3204 7 7 4.7131 2.8826 2.1312 8 6 4.9108 1.9419 3.2424 9 6 4.7909 2.6997 4.5632 10 6 5.7621 3.8826 4.5602 11 6 5.4025 4.8371 3.4193 12 1 4.3768 5.1840 3.5448 13 7 6.3130 5.9846 3.4365 14 6 6.0486 7.0429 4.2281 15 8 5.0570 7.0450 4.9264 16 6 6.9849 8.2236 4.2454 17 16 6.3613 9.4713 5.3988 18 6 7.6104 10.7016 5.2234 19 1 8.4375 10.5389 4.5484 20 6 7.5319 11.8793 5.9537 21 7 8.4653 12.7982 5.8230 22 14 6.1016 12.1604 7.1219 23 1 6.4525 11.6409 8.4681 24 1 5.8144 13.6146 7.2119 25 1 4.9008 11.4492 6.6144 26 6 5.5333 4.1007 2.0824 27 1 6.5758 3.8326 1.9109 28 6 5.0429 5.0041 0.9491 29 1 -0.5400 0.9353 0.0044 30 1 -0.5400 -0.9354 -0.0045 31 1 1.8500 -0.9353 -0.0044 32 1 2.6174 1.4047 -0.9334 33 1 1.3589 2.1314 0.0943 34 1 2.4858 1.2307 2.1110 35 1 3.7444 0.5041 1.0833 36 1 4.1510 1.1616 3.2001 37 1 5.9019 1.4940 3.1699 38 1 5.0331 2.0324 5.3903 39 1 3.7711 3.0668 4.6780 40 1 6.7794 3.5168 4.4207 41 1 5.6935 4.4110 5.5111 42 1 7.1063 5.9828 2.8783 43 1 7.9750 7.8975 4.5639 44 1 7.0478 8.6521 3.2452 45 1 8.4102 13.6214 6.3331 46 1 3.9818 5.2132 1.0844 47 1 5.6022 5.9396 0.9624 48 1 5.1955 4.5030 -0.0068 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001287996151.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:33 Heat of formation + Delta-G solvation = -51.029264 kcal Electronic energy + Delta-G solvation = -27279.183899 eV Core-core repulsion = 23460.928622 eV Total energy + Delta-G solvation = -3818.255277 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.08361 -39.41158 -37.67241 -35.84877 -34.79056 -33.05603 -32.44218 -32.18909 -30.62977 -29.07782 -27.33110 -25.61874 -25.35286 -24.33957 -22.21087 -21.31297 -20.52292 -20.19027 -19.16059 -17.92697 -17.20741 -16.66141 -16.60114 -16.04800 -15.75852 -15.27428 -15.21224 -14.96538 -14.64411 -14.51801 -14.26262 -14.05449 -13.81198 -13.38048 -13.25077 -12.95528 -12.87671 -12.78965 -12.59074 -12.50508 -12.24274 -12.08396 -11.53741 -11.45098 -11.40768 -11.32797 -11.26527 -11.19392 -11.12625 -11.00880 -10.60931 -9.86344 -9.80441 -9.56274 -9.27953 -9.14880 -9.00289 -8.80442 -8.50355 -6.91875 -6.28949 -4.00675 1.83644 2.29688 2.46697 2.82112 2.95462 3.31644 3.35283 3.50571 3.65977 4.05291 4.32883 4.36145 4.43071 4.47399 4.56445 4.61136 4.66958 4.72915 4.81112 4.86950 4.88590 4.98461 5.09759 5.10344 5.12325 5.24788 5.29390 5.37205 5.42376 5.53943 5.56594 5.65839 5.67351 5.74927 5.76305 5.91460 5.92916 6.00685 6.06824 6.07514 6.21229 6.34870 6.38819 6.56454 7.05308 7.57958 7.88287 7.94097 8.41704 8.47337 9.17259 10.80253 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.024022 B = 0.002030 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.338043 B =13788.856863 C =13917.192781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.157 4.157 3 C -0.080 4.080 4 C -0.137 4.137 5 C 0.514 3.486 6 O -0.527 6.527 7 N -0.609 5.609 8 C 0.105 3.895 9 C -0.133 4.133 10 C -0.133 4.133 11 C 0.138 3.862 12 H 0.092 0.908 13 N -0.730 5.730 14 C 0.534 3.466 15 O -0.518 6.518 16 C -0.124 4.124 17 S -0.141 6.141 18 C -0.522 4.522 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.140 3.860 27 H 0.075 0.925 28 C -0.136 4.136 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.108 0.892 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.077 0.923 42 H 0.399 0.601 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.271 0.729 46 H 0.073 0.927 47 H 0.049 0.951 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.273 -29.927 -9.614 32.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.175 4.175 3 C -0.117 4.117 4 C -0.177 4.177 5 C 0.303 3.697 6 O -0.404 6.404 7 N -0.343 5.343 8 C -0.018 4.018 9 C -0.172 4.172 10 C -0.172 4.172 11 C 0.032 3.968 12 H 0.110 0.890 13 N -0.383 5.383 14 C 0.320 3.680 15 O -0.392 6.392 16 C -0.275 4.275 17 S 0.085 5.915 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C 0.036 3.964 27 H 0.093 0.907 28 C -0.193 4.193 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.126 0.874 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.106 0.894 37 H 0.090 0.910 38 H 0.100 0.900 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.095 0.905 42 H 0.233 0.767 43 H 0.115 0.885 44 H 0.116 0.884 45 H 0.081 0.919 46 H 0.092 0.908 47 H 0.067 0.933 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.981 -29.283 -8.865 32.182 hybrid contribution 1.269 0.260 -0.316 1.333 sum -8.712 -29.023 -9.181 31.663 Atomic orbital electron populations 1.23911 0.96020 1.01987 1.00876 1.22953 0.96089 0.98280 1.00163 1.20515 0.97777 0.95507 0.97943 1.21708 0.99003 0.95712 1.01231 1.20719 0.79142 0.88945 0.80889 1.90793 1.64781 1.46667 1.38148 1.48097 1.38336 1.22298 1.25586 1.21754 1.02479 0.91691 0.85837 1.21825 1.00920 0.97609 0.96846 1.21963 0.99205 0.95996 1.00012 1.21254 0.95831 0.85884 0.93865 0.89032 1.45897 1.27907 1.17902 1.46634 1.20272 0.86178 0.82765 0.78777 1.90697 1.27806 1.80156 1.40518 1.23280 1.01535 0.97098 1.05555 1.84786 1.36596 1.15178 1.54948 1.22316 1.10151 1.03254 1.31199 0.89382 1.24710 0.96066 0.94572 0.95941 1.69939 1.33139 1.07777 1.40804 0.86738 0.84267 0.78700 0.82162 1.19226 1.19934 1.15932 1.21460 0.94713 0.84671 0.95556 0.90672 1.22214 1.02436 0.97597 0.97074 0.88452 0.88487 0.87371 0.90188 0.90639 0.88822 0.88829 0.89398 0.91012 0.90049 0.91074 0.91514 0.90456 0.76658 0.88487 0.88411 0.91948 0.90820 0.93273 0.90948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.09 14.32 29.02 0.42 -0.68 16 2 C -0.16 -0.89 9.52 -36.03 -0.34 -1.23 16 3 C -0.08 -0.55 4.95 -27.89 -0.14 -0.69 16 4 C -0.14 -0.81 4.09 -27.89 -0.11 -0.92 16 5 C 0.51 4.75 7.60 -10.98 -0.08 4.67 16 6 O -0.53 -6.64 11.38 5.56 0.06 -6.58 16 7 N -0.61 -5.02 2.98 -165.48 -0.49 -5.51 16 8 C 0.11 0.57 6.30 -3.93 -0.02 0.55 16 9 C -0.13 -0.92 6.06 -26.83 -0.16 -1.08 16 10 C -0.13 -1.27 5.46 -26.69 -0.15 -1.42 16 11 C 0.14 1.55 1.99 -67.81 -0.14 1.42 16 12 H 0.09 1.31 7.58 -51.93 -0.39 0.92 16 13 N -0.73 -9.05 4.51 -53.69 -0.24 -9.29 16 14 C 0.53 9.29 7.81 -10.98 -0.09 9.20 16 15 O -0.52 -10.98 15.52 5.56 0.09 -10.90 16 16 C -0.12 -2.37 6.16 36.01 0.22 -2.15 16 17 S -0.14 -3.58 18.55 -107.50 -1.99 -5.57 16 18 C -0.52 -15.04 10.04 30.94 0.31 -14.73 16 19 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 20 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 21 N -0.88 -26.59 13.97 55.49 0.78 -25.81 16 22 Si 0.86 21.85 27.74 -169.99 -4.72 17.13 16 23 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16 25 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 26 C 0.14 1.33 3.03 -67.60 -0.20 1.12 16 27 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 28 C -0.14 -1.56 7.53 37.16 0.28 -1.28 16 29 H 0.10 0.57 7.84 -52.48 -0.41 0.16 16 30 H 0.10 0.44 8.06 -52.48 -0.42 0.02 16 31 H 0.11 0.47 8.06 -52.48 -0.42 0.05 16 32 H 0.08 0.61 8.10 -51.93 -0.42 0.19 16 33 H 0.07 0.62 7.75 -51.93 -0.40 0.22 16 34 H 0.09 0.45 7.47 -51.93 -0.39 0.06 16 35 H 0.09 0.37 8.12 -51.93 -0.42 -0.05 16 36 H 0.09 0.30 5.96 -51.93 -0.31 -0.01 16 37 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.40 3.84 8.60 -40.82 -0.35 3.49 16 43 H 0.10 1.71 8.14 -51.91 -0.42 1.29 16 44 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 45 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 46 H 0.07 1.02 6.73 -51.93 -0.35 0.67 16 47 H 0.05 0.55 7.69 -51.93 -0.40 0.15 16 48 H 0.07 0.87 6.76 -51.93 -0.35 0.52 16 LS Contribution 396.17 15.07 5.97 5.97 Total: -1.00 -35.10 396.17 -8.86 -43.95 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -8.00 Total: 1.12 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: -0.31 Total: -4.51 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: 0.04 Total: -40.61 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: 0.15 Total: -17.48 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.72 Total: 17.13 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -1.99 Total: -5.57 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.10 -8.86 -43.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001287996151.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.075 kcal (2) G-P(sol) polarization free energy of solvation -35.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds