Wall clock time and date at job start Sat Apr 11 2020 06:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50692 * 120.00080 * 2 1 4 4 C 1.52998 * 109.47693 * 125.27210 * 3 2 1 5 5 C 1.50697 * 109.47194 * 180.02562 * 4 3 2 6 6 O 1.21276 * 120.00408 * 359.97438 * 5 4 3 7 7 N 1.34781 * 119.99746 * 179.97438 * 5 4 3 8 8 C 1.46928 * 120.63015 * 354.65507 * 7 5 4 9 9 C 1.52758 * 109.00933 * 233.58535 * 8 7 5 10 10 C 1.53045 * 109.38577 * 305.59238 * 9 8 7 11 11 C 1.53040 * 109.53702 * 61.23911 * 10 9 8 12 12 H 1.08998 * 109.49461 * 58.58924 * 11 10 9 13 13 N 1.46497 * 109.49437 * 178.68558 * 11 10 9 14 14 C 1.34780 * 120.00086 * 274.83658 * 13 11 10 15 15 O 1.21279 * 119.99817 * 0.02562 * 14 13 11 16 16 C 1.50703 * 120.00149 * 180.02562 * 14 13 11 17 17 S 1.80995 * 109.47139 * 180.02562 * 16 14 13 18 18 C 1.76198 * 100.00056 * 180.02562 * 17 16 14 19 19 H 1.07990 * 119.99914 * 359.97438 * 18 17 16 20 20 C 1.38797 * 120.00141 * 180.02562 * 18 17 16 21 21 N 1.31627 * 120.00052 * 179.97438 * 20 18 17 22 22 Si 1.86808 * 119.99954 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.47113 * 90.00175 * 22 20 18 24 24 H 1.48500 * 109.47104 * 210.00381 * 22 20 18 25 25 H 1.48498 * 109.47015 * 330.00089 * 22 20 18 26 26 C 1.46932 * 120.63039 * 174.94172 * 7 5 4 27 27 H 1.09001 * 109.58360 * 246.29627 * 26 7 5 28 28 C 1.53001 * 109.58417 * 6.57837 * 26 7 5 29 29 H 1.08006 * 120.00129 * 359.73328 * 1 2 3 30 30 H 1.08008 * 119.99969 * 179.72239 * 1 2 3 31 31 H 1.08006 * 120.00129 * 180.26672 * 2 1 3 32 32 H 1.09000 * 109.47179 * 245.27227 * 3 2 1 33 33 H 1.09001 * 109.47547 * 5.26434 * 3 2 1 34 34 H 1.09002 * 109.46576 * 299.99759 * 4 3 2 35 35 H 1.08991 * 109.47564 * 59.99546 * 4 3 2 36 36 H 1.08995 * 109.58622 * 353.42486 * 8 7 5 37 37 H 1.09004 * 109.58089 * 113.84784 * 8 7 5 38 38 H 1.08998 * 109.56542 * 185.55756 * 9 8 7 39 39 H 1.08995 * 109.36214 * 65.50313 * 9 8 7 40 40 H 1.09007 * 109.45717 * 301.21701 * 10 9 8 41 41 H 1.09005 * 109.44874 * 181.25737 * 10 9 8 42 42 H 0.96999 * 120.00408 * 94.84068 * 13 11 10 43 43 H 1.09002 * 109.47054 * 299.99959 * 16 14 13 44 44 H 1.08998 * 109.46900 * 60.00088 * 16 14 13 45 45 H 0.97005 * 119.99747 * 179.97438 * 21 20 18 46 46 H 1.08994 * 109.47124 * 55.72759 * 28 26 7 47 47 H 1.09007 * 109.46710 * 175.72187 * 28 26 7 48 48 H 1.08998 * 109.47082 * 295.72424 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3050 0.0000 4 6 3.0399 1.3303 1.1776 5 6 3.7928 2.6357 1.1779 6 8 3.5708 3.4640 0.3204 7 7 4.7131 2.8826 2.1312 8 6 4.9108 1.9419 3.2424 9 6 4.7909 2.6997 4.5632 10 6 5.7621 3.8826 4.5602 11 6 5.4025 4.8371 3.4193 12 1 4.3768 5.1840 3.5448 13 7 6.3130 5.9846 3.4365 14 6 6.0486 7.0429 4.2281 15 8 5.0570 7.0450 4.9264 16 6 6.9849 8.2236 4.2454 17 16 6.3613 9.4713 5.3988 18 6 7.6104 10.7016 5.2234 19 1 8.4375 10.5389 4.5484 20 6 7.5319 11.8793 5.9537 21 7 8.4653 12.7982 5.8230 22 14 6.1016 12.1604 7.1219 23 1 6.4525 11.6409 8.4681 24 1 5.8144 13.6146 7.2119 25 1 4.9008 11.4492 6.6144 26 6 5.5333 4.1007 2.0824 27 1 6.5758 3.8326 1.9109 28 6 5.0429 5.0041 0.9491 29 1 -0.5400 0.9353 0.0044 30 1 -0.5400 -0.9354 -0.0045 31 1 1.8500 -0.9353 -0.0044 32 1 2.6174 1.4047 -0.9334 33 1 1.3589 2.1314 0.0943 34 1 2.4858 1.2307 2.1110 35 1 3.7444 0.5041 1.0833 36 1 4.1510 1.1616 3.2001 37 1 5.9019 1.4940 3.1699 38 1 5.0331 2.0324 5.3903 39 1 3.7711 3.0668 4.6780 40 1 6.7794 3.5168 4.4207 41 1 5.6935 4.4110 5.5111 42 1 7.1063 5.9828 2.8783 43 1 7.9750 7.8975 4.5639 44 1 7.0478 8.6521 3.2452 45 1 8.4102 13.6214 6.3331 46 1 3.9818 5.2132 1.0844 47 1 5.6022 5.9396 0.9624 48 1 5.1955 4.5030 -0.0068 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001287996151.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:32 Heat of formation + Delta-G solvation = -74.229547 kcal Electronic energy + Delta-G solvation = -27280.189939 eV Core-core repulsion = 23460.928622 eV Total energy + Delta-G solvation = -3819.261317 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.87024 -40.62331 -38.56923 -36.37272 -35.79734 -34.68285 -33.77137 -33.14183 -31.43781 -30.27586 -28.19319 -27.82469 -26.02954 -25.04465 -22.95209 -22.19443 -21.69680 -20.63741 -20.08946 -19.68792 -18.04030 -17.96380 -17.41502 -17.11020 -16.81204 -16.68565 -16.52901 -15.80762 -15.72992 -15.39014 -15.32926 -15.04098 -14.93883 -14.71915 -14.55616 -13.91608 -13.80281 -13.61418 -13.55647 -13.35898 -13.29357 -13.08103 -13.02297 -12.94300 -12.66459 -12.27542 -12.11985 -11.99686 -11.96267 -11.88843 -11.84525 -11.79666 -11.18192 -11.04154 -10.55036 -10.28199 -10.23120 -10.03638 -9.58659 -9.00855 -8.52591 -6.23413 0.96405 1.29805 1.38679 1.44958 1.51529 1.53846 1.64218 1.85964 2.23381 2.34276 2.71161 2.85639 3.43958 3.54113 3.75587 3.84341 3.91860 4.00867 4.02541 4.14890 4.19148 4.20567 4.25837 4.38586 4.45175 4.46940 4.51997 4.55542 4.65330 4.71236 4.81752 4.87978 4.94330 5.00230 5.04907 5.09535 5.15936 5.21165 5.24783 5.33233 5.39565 5.62780 5.69755 5.77489 5.92876 6.10478 6.38852 6.45140 6.92642 7.15937 7.21147 8.59742 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.024022 B = 0.002030 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.338043 B =13788.856863 C =13917.192781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.154 4.154 3 C -0.079 4.079 4 C -0.127 4.127 5 C 0.506 3.494 6 O -0.571 6.571 7 N -0.608 5.608 8 C 0.104 3.896 9 C -0.129 4.129 10 C -0.129 4.129 11 C 0.140 3.860 12 H 0.055 0.945 13 N -0.706 5.706 14 C 0.539 3.461 15 O -0.561 6.561 16 C -0.111 4.111 17 S -0.176 6.176 18 C -0.529 4.529 19 H 0.063 0.937 20 C 0.046 3.954 21 N -0.916 5.916 22 Si 0.914 3.086 23 H -0.261 1.261 24 H -0.259 1.259 25 H -0.239 1.239 26 C 0.147 3.853 27 H 0.103 0.897 28 C -0.127 4.127 29 H 0.087 0.913 30 H 0.111 0.889 31 H 0.129 0.871 32 H 0.068 0.932 33 H 0.051 0.949 34 H 0.111 0.889 35 H 0.125 0.875 36 H 0.116 0.884 37 H 0.097 0.903 38 H 0.106 0.894 39 H 0.053 0.947 40 H 0.089 0.911 41 H 0.046 0.954 42 H 0.417 0.583 43 H 0.117 0.883 44 H 0.112 0.888 45 H 0.277 0.723 46 H 0.042 0.958 47 H 0.047 0.953 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.963 -33.421 -9.407 35.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.172 4.172 3 C -0.117 4.117 4 C -0.167 4.167 5 C 0.296 3.704 6 O -0.450 6.450 7 N -0.342 5.342 8 C -0.017 4.017 9 C -0.168 4.168 10 C -0.168 4.168 11 C 0.034 3.966 12 H 0.073 0.927 13 N -0.359 5.359 14 C 0.325 3.675 15 O -0.439 6.439 16 C -0.262 4.262 17 S 0.050 5.950 18 C -0.677 4.677 19 H 0.081 0.919 20 C -0.159 4.159 21 N -0.554 5.554 22 Si 0.736 3.264 23 H -0.185 1.185 24 H -0.183 1.183 25 H -0.163 1.163 26 C 0.042 3.958 27 H 0.121 0.879 28 C -0.184 4.184 29 H 0.106 0.894 30 H 0.129 0.871 31 H 0.147 0.853 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.129 0.871 35 H 0.143 0.857 36 H 0.134 0.866 37 H 0.115 0.885 38 H 0.124 0.876 39 H 0.071 0.929 40 H 0.108 0.892 41 H 0.065 0.935 42 H 0.254 0.746 43 H 0.135 0.865 44 H 0.130 0.870 45 H 0.086 0.914 46 H 0.061 0.939 47 H 0.065 0.935 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.637 -32.824 -8.675 35.293 hybrid contribution 1.206 1.261 -0.495 1.814 sum -8.431 -31.564 -9.171 33.933 Atomic orbital electron populations 1.24039 0.96340 1.02266 1.01040 1.23009 0.96002 0.98246 0.99943 1.20457 0.97614 0.95560 0.98079 1.21719 0.99042 0.94537 1.01356 1.21387 0.78952 0.89702 0.80365 1.90784 1.66023 1.48284 1.39937 1.48225 1.37741 1.22016 1.26206 1.22027 1.04989 0.91230 0.83483 1.21829 0.99065 0.96984 0.98913 1.21928 1.01324 0.96248 0.97293 1.21331 0.93572 0.85600 0.96086 0.92660 1.45654 1.28369 1.16887 1.45014 1.19932 0.85199 0.83263 0.79134 1.90689 1.29460 1.81029 1.42723 1.23267 1.02542 0.96008 1.04358 1.84723 1.36233 1.16454 1.57554 1.22458 1.10270 1.04479 1.30471 0.91899 1.25549 0.98437 0.94444 0.97488 1.70015 1.34847 1.08491 1.42023 0.85876 0.81079 0.79261 0.80207 1.18543 1.18342 1.16294 1.21353 0.96313 0.84936 0.93164 0.87880 1.22058 1.00437 0.98057 0.97844 0.89419 0.87119 0.85275 0.91368 0.93009 0.87135 0.85698 0.86619 0.88451 0.87603 0.92863 0.89239 0.93478 0.74578 0.86529 0.86991 0.91365 0.93911 0.93454 0.91455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.05 14.32 67.78 0.97 -1.08 16 2 C -0.15 -1.45 9.52 25.65 0.24 -1.21 16 3 C -0.08 -1.02 4.95 29.84 0.15 -0.87 16 4 C -0.13 -1.16 4.09 29.85 0.12 -1.04 16 5 C 0.51 8.65 7.60 87.66 0.67 9.32 16 6 O -0.57 -14.66 11.38 -3.02 -0.03 -14.69 16 7 N -0.61 -8.57 2.98 -795.84 -2.37 -10.94 16 8 C 0.10 0.70 6.30 86.22 0.54 1.24 16 9 C -0.13 -1.42 6.06 30.53 0.19 -1.24 16 10 C -0.13 -2.22 5.46 30.62 0.17 -2.05 16 11 C 0.14 3.02 1.99 45.07 0.09 3.11 16 12 H 0.06 1.64 7.58 -2.39 -0.02 1.62 16 13 N -0.71 -16.63 4.51 -442.17 -2.00 -18.62 16 14 C 0.54 18.54 7.81 87.66 0.69 19.23 16 15 O -0.56 -24.20 15.52 -3.03 -0.05 -24.24 16 16 C -0.11 -4.17 6.16 71.24 0.44 -3.73 16 17 S -0.18 -8.97 18.55 -56.49 -1.05 -10.01 16 18 C -0.53 -30.97 10.04 67.95 0.68 -30.28 16 19 H 0.06 3.87 8.03 -2.92 -0.02 3.85 16 20 C 0.05 2.73 5.50 84.86 0.47 3.20 16 21 N -0.92 -55.96 13.97 21.65 0.30 -55.66 16 22 Si 0.91 45.36 27.74 68.60 1.90 47.27 16 23 H -0.26 -12.57 7.11 99.48 0.71 -11.86 16 24 H -0.26 -12.07 7.11 99.48 0.71 -11.37 16 25 H -0.24 -11.92 6.74 99.48 0.67 -11.25 16 26 C 0.15 2.52 3.03 44.97 0.14 2.66 16 27 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 28 C -0.13 -2.91 7.53 71.98 0.54 -2.37 16 29 H 0.09 1.04 7.84 -2.91 -0.02 1.01 16 30 H 0.11 0.81 8.06 -2.91 -0.02 0.79 16 31 H 0.13 0.69 8.06 -2.91 -0.02 0.67 16 32 H 0.07 1.03 8.10 -2.39 -0.02 1.01 16 33 H 0.05 0.90 7.75 -2.39 -0.02 0.88 16 34 H 0.11 0.68 7.47 -2.39 -0.02 0.67 16 35 H 0.13 0.41 8.12 -2.39 -0.02 0.39 16 36 H 0.12 0.20 5.96 -2.39 -0.01 0.18 16 37 H 0.10 0.28 8.14 -2.38 -0.02 0.26 16 38 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 41 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 42 H 0.42 7.02 8.60 -92.71 -0.80 6.22 16 43 H 0.12 3.95 8.14 -2.39 -0.02 3.93 16 44 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 45 H 0.28 15.64 8.31 -92.70 -0.77 14.87 16 46 H 0.04 1.24 6.73 -2.39 -0.02 1.23 16 47 H 0.05 1.05 7.69 -2.38 -0.02 1.03 16 48 H 0.07 1.62 6.76 -2.39 -0.02 1.60 16 Total: -1.00 -80.35 396.17 2.91 -77.44 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: 0.11 Total: 14.58 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: 6.09 Total: -5.12 kcal Atomic # 7 Polarization: -81.16 SS G_CDS: -4.06 Total: -85.23 kcal Atomic # 8 Polarization: -38.85 SS G_CDS: -0.08 Total: -38.93 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.90 Total: 47.27 kcal Atomic # 16 Polarization: -8.97 SS G_CDS: -1.05 Total: -10.01 kcal Total: -80.35 2.91 -77.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001287996151.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.212 kcal (2) G-P(sol) polarization free energy of solvation -80.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds