Wall clock time and date at job start Sat Apr 11 2020 06:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50701 * 119.99841 * 2 1 4 4 C 1.53007 * 109.47327 * 359.97438 * 3 2 1 5 5 C 1.53001 * 109.47098 * 239.99785 * 3 2 1 6 6 C 1.50703 * 109.47355 * 120.00087 * 3 2 1 7 7 O 1.21283 * 119.99488 * 359.97438 * 6 3 2 8 8 N 1.34777 * 120.00290 * 180.02562 * 6 3 2 9 9 C 1.46498 * 119.99828 * 180.27728 * 8 6 3 10 10 H 1.09002 * 112.85447 * 23.52517 * 9 8 6 11 11 C 1.53782 * 113.61542 * 154.72141 * 9 8 6 12 12 C 1.53779 * 87.08025 * 139.97648 * 11 9 8 13 13 H 1.08998 * 113.60914 * 89.20474 * 12 11 9 14 14 C 1.53004 * 113.61331 * 220.01623 * 12 11 9 15 15 N 1.46501 * 109.46807 * 185.00241 * 14 12 11 16 16 C 1.34772 * 119.99878 * 180.02562 * 15 14 12 17 17 O 1.21279 * 120.00280 * 0.02562 * 16 15 14 18 18 C 1.50703 * 120.00140 * 180.02562 * 16 15 14 19 19 S 1.80999 * 109.47075 * 180.02562 * 18 16 15 20 20 C 1.76204 * 100.00149 * 179.97438 * 19 18 16 21 21 H 1.08006 * 119.99620 * 359.97438 * 20 19 18 22 22 C 1.38795 * 120.00218 * 179.97438 * 20 19 18 23 23 N 1.31638 * 119.99815 * 179.97438 * 22 20 19 24 24 Si 1.86794 * 120.00257 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47508 * 89.99536 * 24 22 20 26 26 H 1.48494 * 109.47368 * 209.99994 * 24 22 20 27 27 H 1.48506 * 109.47119 * 330.00001 * 24 22 20 28 28 C 1.53777 * 87.08273 * 334.57004 * 12 11 9 29 29 H 1.07995 * 119.99992 * 180.02562 * 1 2 3 30 30 H 1.08003 * 119.99700 * 359.97438 * 1 2 3 31 31 H 1.07996 * 120.00337 * 180.02562 * 2 1 3 32 32 H 1.09001 * 109.46852 * 180.02562 * 4 3 2 33 33 H 1.08993 * 109.46731 * 300.00241 * 4 3 2 34 34 H 1.09003 * 109.46582 * 60.00376 * 4 3 2 35 35 H 1.08992 * 109.47503 * 300.00334 * 5 3 2 36 36 H 1.08998 * 109.46818 * 60.00408 * 5 3 2 37 37 H 1.09008 * 109.47076 * 179.97438 * 5 3 2 38 38 H 0.97001 * 119.99727 * 359.97438 * 8 6 3 39 39 H 1.08997 * 113.61719 * 254.52880 * 11 9 8 40 40 H 1.09000 * 113.61236 * 25.34621 * 11 9 8 41 41 H 1.08994 * 109.47061 * 305.00223 * 14 12 11 42 42 H 1.08994 * 109.46750 * 65.00828 * 14 12 11 43 43 H 0.96999 * 120.00309 * 359.97438 * 15 14 12 44 44 H 1.09000 * 109.46584 * 299.99670 * 18 16 15 45 45 H 1.08990 * 109.47459 * 60.00247 * 18 16 15 46 46 H 0.97000 * 119.99708 * 180.02562 * 23 22 20 47 47 H 1.09001 * 113.61338 * 270.87786 * 28 12 11 48 48 H 1.09000 * 113.61355 * 139.98049 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0692 2.4681 -0.0006 5 6 2.9431 1.3862 -1.2492 6 6 2.9299 1.3850 1.2305 7 8 2.9347 0.4722 2.0290 8 7 3.6987 2.4713 1.4440 9 6 4.5455 2.5462 2.6371 10 1 4.7911 1.5653 3.0442 11 6 5.7660 3.4666 2.4695 12 6 5.5062 3.9422 3.9086 13 1 6.0154 3.3445 4.6645 14 6 5.7106 5.4460 4.1034 15 7 5.5576 5.7799 5.5216 16 6 5.6951 7.0562 5.9321 17 8 5.9452 7.9284 5.1274 18 6 5.5383 7.3996 7.3911 19 16 5.7784 9.1787 7.6213 20 6 5.5453 9.2960 9.3639 21 1 5.3256 8.4094 9.9402 22 6 5.6440 10.5278 9.9960 23 7 5.4693 10.6154 11.2978 24 14 6.0233 12.0613 8.9993 25 1 4.7538 12.6786 8.5381 26 1 6.7662 13.0301 9.8447 27 1 6.8514 11.6946 7.8224 28 6 4.0371 3.5432 3.6917 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9354 0.0004 31 1 1.8500 -0.9352 -0.0004 32 1 1.6142 3.4121 -0.0011 33 1 0.4429 2.4101 -0.8908 34 1 0.4423 2.4105 0.8892 35 1 3.6514 0.5578 -1.2493 36 1 2.3165 1.3285 -2.1392 37 1 3.4878 2.3304 -1.2495 38 1 3.6945 3.2014 0.8055 39 1 6.7061 2.9280 2.3505 40 1 5.6261 4.2448 1.7191 41 1 6.7110 5.7228 3.7709 42 1 4.9696 5.9920 3.5197 43 1 5.3565 5.0825 6.1652 44 1 4.5381 7.1223 7.7240 45 1 6.2798 6.8541 7.9745 46 1 5.5379 11.4763 11.7394 47 1 3.4240 4.3432 3.2766 48 1 3.5815 3.0663 4.5595 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001290018802.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:47 Heat of formation + Delta-G solvation = -72.391750 kcal Electronic energy + Delta-G solvation = -26089.144742 eV Core-core repulsion = 22269.963118 eV Total energy + Delta-G solvation = -3819.181624 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.55916 -40.70874 -39.64626 -37.24375 -35.80228 -34.67191 -34.34329 -31.77962 -31.22653 -28.34636 -28.26999 -27.77769 -26.66649 -25.29079 -23.50695 -21.88660 -21.72137 -20.83357 -19.84335 -19.37461 -17.99927 -17.84828 -17.65015 -17.16124 -16.95595 -16.72507 -16.25664 -16.09295 -15.91083 -15.61834 -15.22241 -14.93798 -14.91891 -14.66513 -14.54719 -13.69185 -13.43445 -13.38692 -13.34988 -13.33975 -13.21660 -13.08375 -13.02017 -12.92683 -12.68936 -12.67158 -12.26750 -12.10832 -11.87605 -11.70662 -11.65696 -11.38778 -11.16894 -10.97256 -10.79349 -10.53667 -10.28550 -10.10499 -9.99207 -8.99241 -8.51387 -6.22328 0.99981 1.29406 1.31830 1.47321 1.56877 1.58450 1.60352 2.22100 2.26048 2.35531 2.72371 2.86852 3.48601 3.56056 3.58507 3.75064 3.82063 3.83689 3.94391 4.00909 4.09927 4.23516 4.29586 4.43967 4.46984 4.48173 4.67542 4.71712 4.76194 4.78710 4.83772 4.85098 4.85520 4.90467 5.04286 5.06368 5.10691 5.23539 5.27055 5.29398 5.47896 5.62120 5.68691 5.70662 5.80922 6.11390 6.48898 6.55419 6.93699 7.21333 7.24396 8.61006 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.025477 B = 0.001591 C = 0.001577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.772649 B =17590.129665 C =17747.836015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.146 4.146 3 C -0.054 4.054 4 C -0.143 4.143 5 C -0.134 4.134 6 C 0.522 3.478 7 O -0.584 6.584 8 N -0.705 5.705 9 C 0.119 3.881 10 H 0.099 0.901 11 C -0.121 4.121 12 C -0.110 4.110 13 H 0.112 0.888 14 C 0.134 3.866 15 N -0.711 5.711 16 C 0.534 3.466 17 O -0.564 6.564 18 C -0.113 4.113 19 S -0.175 6.175 20 C -0.531 4.531 21 H 0.061 0.939 22 C 0.045 3.955 23 N -0.917 5.917 24 Si 0.916 3.084 25 H -0.262 1.262 26 H -0.259 1.259 27 H -0.236 1.236 28 C -0.146 4.146 29 H 0.105 0.895 30 H 0.115 0.885 31 H 0.099 0.901 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.414 0.586 39 H 0.089 0.911 40 H 0.104 0.896 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.416 0.584 44 H 0.112 0.888 45 H 0.113 0.887 46 H 0.277 0.723 47 H 0.089 0.911 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.521 -21.630 -28.440 36.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.164 4.164 3 C -0.057 4.057 4 C -0.200 4.200 5 C -0.191 4.191 6 C 0.310 3.690 7 O -0.464 6.464 8 N -0.356 5.356 9 C 0.014 3.986 10 H 0.117 0.883 11 C -0.160 4.160 12 C -0.129 4.129 13 H 0.130 0.870 14 C 0.011 3.989 15 N -0.365 5.365 16 C 0.320 3.680 17 O -0.443 6.443 18 C -0.264 4.264 19 S 0.052 5.948 20 C -0.678 4.678 21 H 0.079 0.921 22 C -0.160 4.160 23 N -0.555 5.555 24 Si 0.737 3.263 25 H -0.187 1.187 26 H -0.183 1.183 27 H -0.160 1.160 28 C -0.184 4.184 29 H 0.123 0.877 30 H 0.133 0.867 31 H 0.118 0.882 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.252 0.748 39 H 0.107 0.893 40 H 0.122 0.878 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.252 0.748 44 H 0.130 0.870 45 H 0.131 0.869 46 H 0.086 0.914 47 H 0.107 0.893 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.102 -20.751 -29.060 36.071 hybrid contribution -0.373 -0.497 1.597 1.714 sum -5.475 -21.248 -27.463 35.152 Atomic orbital electron populations 1.24163 0.95680 1.03186 0.99492 1.22571 0.96153 0.96787 1.00908 1.19946 0.95877 0.96146 0.93701 1.21985 0.98626 0.96108 1.03329 1.21832 0.99064 1.03118 0.95128 1.20989 0.79558 0.81406 0.87063 1.90682 1.67247 1.39775 1.48684 1.45924 1.43629 1.20648 1.25422 1.22450 0.91344 0.98925 0.85920 0.88323 1.23285 0.98020 0.98678 0.95978 1.22543 0.97416 0.93720 0.99268 0.87023 1.21405 1.01734 0.95149 0.80648 1.45775 1.72309 1.07729 1.10681 1.19914 0.75868 0.83143 0.89116 1.90684 1.48933 1.48718 1.55921 1.23288 1.07114 0.99219 0.96785 1.84671 1.93914 1.07465 1.08783 1.22479 1.55546 0.98019 0.91786 0.92058 1.25583 0.93278 1.01614 0.95558 1.70024 1.48590 1.27159 1.09739 0.85848 0.80419 0.79628 0.80359 1.18671 1.18344 1.15998 1.23563 0.96403 0.99137 0.99341 0.87718 0.86707 0.88248 0.90230 0.89457 0.92827 0.92726 0.89960 0.90050 0.74799 0.89257 0.87774 0.91728 0.91822 0.74767 0.87026 0.86899 0.91380 0.89265 0.91526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.21 13.70 67.78 0.93 -1.28 16 2 C -0.15 -2.06 8.00 25.65 0.21 -1.85 16 3 C -0.05 -0.59 0.84 -53.67 -0.05 -0.63 16 4 C -0.14 -1.04 7.02 71.98 0.51 -0.53 16 5 C -0.13 -0.85 8.35 71.98 0.60 -0.25 16 6 C 0.52 8.57 6.47 87.66 0.57 9.14 16 7 O -0.58 -15.19 15.63 -3.04 -0.05 -15.24 16 8 N -0.71 -7.58 5.14 -440.04 -2.26 -9.84 16 9 C 0.12 1.41 4.24 45.52 0.19 1.60 16 10 H 0.10 1.58 7.46 -2.39 -0.02 1.56 16 11 C -0.12 -0.97 7.39 31.12 0.23 -0.74 16 12 C -0.11 -1.20 3.75 -10.27 -0.04 -1.23 16 13 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 14 C 0.13 2.31 5.51 86.38 0.48 2.79 16 15 N -0.71 -15.40 5.56 -463.07 -2.57 -17.97 16 16 C 0.53 17.65 7.85 87.66 0.69 18.34 16 17 O -0.56 -23.33 15.86 -3.03 -0.05 -23.38 16 18 C -0.11 -4.18 6.16 71.24 0.44 -3.75 16 19 S -0.17 -8.77 18.55 -56.49 -1.05 -9.82 16 20 C -0.53 -30.89 10.04 67.95 0.68 -30.21 16 21 H 0.06 3.77 8.03 -2.91 -0.02 3.74 16 22 C 0.05 2.64 5.50 84.86 0.47 3.11 16 23 N -0.92 -55.85 13.97 21.65 0.30 -55.55 16 24 Si 0.92 44.83 27.74 68.60 1.90 46.74 16 25 H -0.26 -12.50 7.11 99.48 0.71 -11.79 16 26 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 27 H -0.24 -11.51 6.74 99.48 0.67 -10.84 16 28 C -0.15 -1.79 7.43 31.12 0.23 -1.56 16 29 H 0.10 1.08 8.06 -2.91 -0.02 1.05 16 30 H 0.11 1.05 5.69 -2.91 -0.02 1.03 16 31 H 0.10 1.62 8.06 -2.91 -0.02 1.59 16 32 H 0.08 0.32 7.56 -2.39 -0.02 0.30 16 33 H 0.09 0.40 7.50 -2.39 -0.02 0.38 16 34 H 0.05 0.54 7.50 -2.39 -0.02 0.52 16 35 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.08 0.22 7.57 -2.38 -0.02 0.20 16 38 H 0.41 2.10 7.56 -92.71 -0.70 1.40 16 39 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.10 0.61 8.08 -2.39 -0.02 0.59 16 41 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.06 1.20 7.84 -2.39 -0.02 1.18 16 43 H 0.42 6.59 8.47 -92.71 -0.79 5.81 16 44 H 0.11 3.81 8.14 -2.40 -0.02 3.79 16 45 H 0.11 3.83 8.14 -2.40 -0.02 3.81 16 46 H 0.28 15.57 8.31 -92.71 -0.77 14.80 16 47 H 0.09 1.11 7.90 -2.39 -0.02 1.09 16 48 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -80.33 406.38 1.80 -78.54 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -0.56 Total: 13.60 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: 6.13 Total: -7.06 kcal Atomic # 7 Polarization: -78.83 SS G_CDS: -4.53 Total: -83.36 kcal Atomic # 8 Polarization: -38.53 SS G_CDS: -0.10 Total: -38.62 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.90 Total: 46.74 kcal Atomic # 16 Polarization: -8.77 SS G_CDS: -1.05 Total: -9.82 kcal Total: -80.33 1.80 -78.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001290018802.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.147 kcal (2) G-P(sol) polarization free energy of solvation -80.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds