Wall clock time and date at job start Sat Apr 11 2020 06:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50703 * 120.00026 * 2 1 4 4 C 1.52998 * 109.47324 * 124.99803 * 3 2 1 5 5 C 1.53001 * 109.47221 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.47071 * 180.02562 * 5 4 3 7 7 O 1.21279 * 120.00052 * 359.97438 * 6 5 4 8 8 N 1.34771 * 120.00097 * 180.02562 * 6 5 4 9 9 C 1.46499 * 120.00362 * 179.97438 * 8 6 5 10 10 H 1.09007 * 110.64055 * 323.31236 * 9 8 6 11 11 C 1.55153 * 110.72187 * 86.45025 * 9 8 6 12 12 C 1.54912 * 101.58230 * 154.04498 * 11 9 8 13 13 N 1.47421 * 104.83107 * 322.99299 * 12 11 9 14 14 C 1.34775 * 125.64649 * 204.09463 * 13 12 11 15 15 O 1.21284 * 120.00295 * 180.02562 * 14 13 12 16 16 C 1.50708 * 119.99957 * 0.02562 * 14 13 12 17 17 S 1.80998 * 109.47052 * 180.02562 * 16 14 13 18 18 C 1.76199 * 100.00013 * 180.02562 * 17 16 14 19 19 H 1.07991 * 119.99794 * 0.02562 * 18 17 16 20 20 C 1.38798 * 119.99771 * 180.02562 * 18 17 16 21 21 N 1.31633 * 120.00311 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99653 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47055 * 180.02562 * 22 20 18 24 24 H 1.48508 * 109.47016 * 299.99635 * 22 20 18 25 25 H 1.48495 * 109.47483 * 59.99992 * 22 20 18 26 26 C 1.47014 * 108.70511 * 24.35609 * 13 12 11 27 27 H 1.09005 * 109.88315 * 239.29631 * 26 13 12 28 28 C 1.52998 * 109.88541 * 118.12953 * 26 13 12 29 29 H 1.07995 * 120.00249 * 359.97438 * 1 2 3 30 30 H 1.08001 * 119.99665 * 179.97438 * 1 2 3 31 31 H 1.08002 * 120.00606 * 180.02562 * 2 1 3 32 32 H 1.09003 * 109.47025 * 5.00608 * 3 2 1 33 33 H 1.08995 * 109.47641 * 245.00385 * 3 2 1 34 34 H 1.09003 * 109.46412 * 60.00430 * 4 3 2 35 35 H 1.08995 * 109.47236 * 300.00830 * 4 3 2 36 36 H 1.08996 * 109.47018 * 60.00083 * 5 4 3 37 37 H 1.09007 * 109.46979 * 299.99971 * 5 4 3 38 38 H 0.97006 * 119.99878 * 359.97438 * 8 6 5 39 39 H 1.08994 * 111.00496 * 35.97093 * 11 9 8 40 40 H 1.09003 * 111.03753 * 272.13341 * 11 9 8 41 41 H 1.09002 * 110.36666 * 204.15234 * 12 11 9 42 42 H 1.09008 * 110.36407 * 81.83372 * 12 11 9 43 43 H 1.09005 * 109.46512 * 60.00633 * 16 14 13 44 44 H 1.08991 * 109.47135 * 300.00153 * 16 14 13 45 45 H 0.97001 * 119.99662 * 359.97438 * 21 20 18 46 46 H 1.09001 * 109.46601 * 61.45393 * 28 26 13 47 47 H 1.09000 * 109.47226 * 181.45101 * 28 26 13 48 48 H 1.08994 * 109.47222 * 301.45625 * 28 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 6 3.7995 2.6585 1.1820 6 6 4.7569 2.6858 2.3455 7 8 4.8210 1.7388 3.1004 8 7 5.5411 3.7630 2.5478 9 6 6.4713 3.7899 3.6792 10 1 6.0332 3.2998 4.5486 11 6 7.8204 3.1258 3.2966 12 6 8.7999 3.8285 4.2695 13 7 8.3134 5.2173 4.3572 14 6 9.0567 6.2902 4.6930 15 8 8.5491 7.3910 4.7337 16 6 10.5187 6.1222 5.0178 17 16 11.2348 7.7333 5.4272 18 6 12.8988 7.2545 5.7536 19 1 13.1888 6.2177 5.6690 20 6 13.8367 8.2099 6.1195 21 7 13.4831 9.4736 6.2231 22 14 15.6010 7.7024 6.4648 23 1 16.3975 8.9003 6.8337 24 1 15.6255 6.7281 7.5854 25 1 16.1824 7.0753 5.2508 26 6 6.8817 5.2373 4.0238 27 1 6.7104 5.8840 3.1633 28 6 6.0749 5.7380 5.2235 29 1 -0.5400 0.9352 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8501 -0.9353 -0.0004 32 1 1.3585 2.1317 0.0897 33 1 2.6212 1.4027 -0.9313 34 1 3.7399 0.5066 1.0919 35 1 2.4772 1.2356 2.1130 36 1 3.0943 3.4847 1.2718 37 1 4.3573 2.7564 0.2506 38 1 5.4895 4.5207 1.9442 39 1 8.0802 3.3383 2.2596 40 1 7.7929 2.0514 3.4780 41 1 9.8135 3.8061 3.8692 42 1 8.7676 3.3525 5.2497 43 1 11.0366 5.7026 4.1553 44 1 10.6268 5.4501 5.8690 45 1 12.5671 9.7372 6.0434 46 1 6.3798 6.7559 5.4669 47 1 5.0130 5.7257 4.9779 48 1 6.2573 5.0894 6.0803 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001290710819.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:51 Heat of formation + Delta-G solvation = -72.927483 kcal Electronic energy + Delta-G solvation = -26367.405059 eV Core-core repulsion = 22548.200204 eV Total energy + Delta-G solvation = -3819.204855 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.71007 -39.61055 -37.53556 -36.39554 -34.49736 -32.88040 -32.54954 -31.84076 -31.02932 -28.81449 -27.73619 -25.59117 -24.87124 -22.98217 -22.79094 -21.26194 -20.79285 -20.25664 -19.07789 -18.21008 -17.45638 -17.18603 -16.49972 -16.26531 -15.86107 -15.49260 -15.18358 -14.55390 -14.39730 -14.26294 -14.10457 -13.91284 -13.84880 -13.77092 -13.09819 -13.00574 -12.83486 -12.64261 -12.39634 -12.32602 -12.15453 -12.04313 -11.97930 -11.89529 -11.68624 -11.45788 -11.36943 -11.17670 -11.02776 -10.93160 -10.21426 -10.18690 -9.78040 -9.60726 -9.54878 -9.41283 -9.03370 -8.67626 -8.25067 -6.69992 -6.64122 -4.02399 1.83059 2.27093 2.49987 2.90179 2.93778 3.31916 3.36673 3.43316 3.56739 4.04007 4.22431 4.26914 4.28108 4.31184 4.49850 4.71155 4.73154 4.78373 4.86866 4.89646 4.96466 5.03346 5.07876 5.13577 5.16463 5.20557 5.31624 5.37487 5.38314 5.46425 5.47839 5.50868 5.65081 5.67650 5.72024 5.75883 5.80951 5.87483 5.98181 6.10393 6.13917 6.18415 6.31558 6.36858 7.07785 7.51177 7.84529 7.89769 8.39931 8.48030 9.24930 10.79750 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.035713 B = 0.001655 C = 0.001616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.829814 B =16917.753317 C =17317.792563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.152 4.152 3 C -0.096 4.096 4 C -0.100 4.100 5 C -0.142 4.142 6 C 0.515 3.485 7 O -0.537 6.537 8 N -0.723 5.723 9 C 0.137 3.863 10 H 0.106 0.894 11 C -0.143 4.143 12 C 0.100 3.900 13 N -0.621 5.621 14 C 0.550 3.450 15 O -0.513 6.513 16 C -0.125 4.125 17 S -0.115 6.115 18 C -0.608 4.608 19 H 0.066 0.934 20 C 0.036 3.964 21 N -0.883 5.883 22 Si 1.083 2.917 23 H -0.277 1.277 24 H -0.285 1.285 25 H -0.285 1.285 26 C 0.134 3.866 27 H 0.078 0.922 28 C -0.163 4.163 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.109 0.891 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.402 0.598 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.073 0.927 43 H 0.091 0.909 44 H 0.092 0.908 45 H 0.278 0.722 46 H 0.077 0.923 47 H 0.062 0.938 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.320 -18.008 -12.623 31.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.170 4.170 3 C -0.133 4.133 4 C -0.138 4.138 5 C -0.182 4.182 6 C 0.302 3.698 7 O -0.413 6.413 8 N -0.375 5.375 9 C 0.032 3.968 10 H 0.124 0.876 11 C -0.182 4.182 12 C -0.023 4.023 13 N -0.359 5.359 14 C 0.338 3.662 15 O -0.387 6.387 16 C -0.276 4.276 17 S 0.111 5.889 18 C -0.756 4.756 19 H 0.084 0.916 20 C -0.174 4.174 21 N -0.517 5.517 22 Si 0.909 3.091 23 H -0.202 1.202 24 H -0.211 1.211 25 H -0.211 1.211 26 C 0.030 3.970 27 H 0.096 0.904 28 C -0.221 4.221 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.127 0.873 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.237 0.763 39 H 0.098 0.902 40 H 0.108 0.892 41 H 0.102 0.898 42 H 0.091 0.909 43 H 0.110 0.890 44 H 0.110 0.890 45 H 0.090 0.910 46 H 0.096 0.904 47 H 0.081 0.919 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -21.506 -16.367 -11.542 29.387 hybrid contribution -0.766 -1.734 -0.811 2.062 sum -22.272 -18.101 -12.353 31.245 Atomic orbital electron populations 1.23865 0.95997 1.01862 1.01615 1.22954 0.96036 0.98572 0.99470 1.20803 0.98210 0.95577 0.98738 1.21286 0.97738 0.96069 0.98693 1.21718 0.98224 1.00917 0.97297 1.20754 0.80576 0.82013 0.86475 1.90720 1.68268 1.35131 1.47218 1.45997 1.40851 1.20217 1.30404 1.22025 0.89512 0.95144 0.90160 0.87647 1.23198 0.94011 1.00853 1.00125 1.22321 0.98831 0.81533 0.99625 1.48490 1.09009 1.07596 1.70759 1.19997 0.87800 0.82707 0.75659 1.90698 1.73003 1.24302 1.50675 1.23300 0.93538 1.06191 1.04546 1.84807 1.09302 1.05077 1.89723 1.23693 0.94406 0.98814 1.58655 0.91615 1.26049 1.05200 0.92915 0.93275 1.70806 1.21587 1.16453 1.42904 0.83337 0.73350 0.75744 0.76637 1.20250 1.21113 1.21122 1.21556 0.81800 0.95049 0.98601 0.90431 1.22145 0.99130 1.03433 0.97384 0.88620 0.88562 0.87346 0.91416 0.90863 0.90964 0.91008 0.88717 0.88693 0.76272 0.90163 0.89213 0.89838 0.90926 0.89025 0.88966 0.91007 0.90420 0.91868 0.92227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.04 14.32 29.02 0.42 -0.63 16 2 C -0.15 -0.85 9.52 -36.02 -0.34 -1.19 16 3 C -0.10 -0.46 5.66 -27.88 -0.16 -0.62 16 4 C -0.10 -0.60 4.49 -26.73 -0.12 -0.72 16 5 C -0.14 -0.70 5.70 -27.88 -0.16 -0.86 16 6 C 0.51 4.26 7.83 -10.99 -0.09 4.17 16 7 O -0.54 -6.57 15.71 5.56 0.09 -6.48 16 8 N -0.72 -5.20 5.21 -52.03 -0.27 -5.47 16 9 C 0.14 1.25 2.76 -66.09 -0.18 1.07 16 10 H 0.11 1.09 7.39 -51.93 -0.38 0.70 16 11 C -0.14 -1.26 6.77 -24.58 -0.17 -1.43 16 12 C 0.10 1.06 6.69 -2.53 -0.02 1.04 16 13 N -0.62 -8.52 3.06 -163.01 -0.50 -9.02 16 14 C 0.55 10.22 7.66 -10.98 -0.08 10.14 16 15 O -0.51 -11.31 14.91 5.55 0.08 -11.23 16 16 C -0.12 -2.53 5.16 36.01 0.19 -2.34 16 17 S -0.12 -3.09 19.60 -107.50 -2.11 -5.20 16 18 C -0.61 -17.44 9.50 30.94 0.29 -17.14 16 19 H 0.07 1.80 7.80 -52.49 -0.41 1.39 16 20 C 0.04 1.05 5.49 -17.43 -0.10 0.95 16 21 N -0.88 -27.38 13.67 55.49 0.76 -26.63 16 22 Si 1.08 24.80 29.92 -169.99 -5.09 19.72 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 24 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 25 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 26 C 0.13 1.51 3.21 -66.95 -0.22 1.29 16 27 H 0.08 0.86 7.70 -51.93 -0.40 0.46 16 28 C -0.16 -1.90 9.11 37.16 0.34 -1.56 16 29 H 0.10 0.45 7.84 -52.49 -0.41 0.04 16 30 H 0.10 0.44 8.06 -52.49 -0.42 0.02 16 31 H 0.11 0.57 8.06 -52.49 -0.42 0.15 16 32 H 0.07 0.29 7.79 -51.93 -0.40 -0.12 16 33 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 35 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 36 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.09 0.31 8.14 -51.92 -0.42 -0.11 16 38 H 0.40 2.00 8.33 -40.82 -0.34 1.66 16 39 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.08 0.86 7.48 -51.93 -0.39 0.47 16 42 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 43 H 0.09 1.73 7.85 -51.91 -0.41 1.32 16 44 H 0.09 1.76 8.14 -51.92 -0.42 1.33 16 45 H 0.28 8.79 7.12 -40.82 -0.29 8.49 16 46 H 0.08 1.14 6.89 -51.93 -0.36 0.78 16 47 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 409.04 15.07 6.16 6.16 Total: -1.00 -36.16 409.04 -9.34 -45.50 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -8.08 Total: 0.46 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: -0.39 Total: -7.82 kcal Atomic # 7 Polarization: -41.10 SS G_CDS: -0.01 Total: -41.11 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: 0.17 Total: -17.71 kcal Atomic # 14 Polarization: 24.80 SS G_CDS: -5.09 Total: 19.72 kcal Atomic # 16 Polarization: -3.09 SS G_CDS: -2.11 Total: -5.20 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -36.16 -9.34 -45.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001290710819.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.426 kcal (2) G-P(sol) polarization free energy of solvation -36.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds