Wall clock time and date at job start Sat Apr 11 2020 06:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50703 * 120.00026 * 2 1 4 4 C 1.52998 * 109.47324 * 124.99803 * 3 2 1 5 5 C 1.53001 * 109.47221 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.47071 * 180.02562 * 5 4 3 7 7 O 1.21279 * 120.00052 * 359.97438 * 6 5 4 8 8 N 1.34771 * 120.00097 * 180.02562 * 6 5 4 9 9 C 1.46499 * 120.00362 * 179.97438 * 8 6 5 10 10 H 1.09007 * 110.64055 * 323.31236 * 9 8 6 11 11 C 1.55153 * 110.72187 * 86.45025 * 9 8 6 12 12 C 1.54912 * 101.58230 * 154.04498 * 11 9 8 13 13 N 1.47421 * 104.83107 * 322.99299 * 12 11 9 14 14 C 1.34775 * 125.64649 * 204.09463 * 13 12 11 15 15 O 1.21284 * 120.00295 * 180.02562 * 14 13 12 16 16 C 1.50708 * 119.99957 * 0.02562 * 14 13 12 17 17 S 1.80998 * 109.47052 * 180.02562 * 16 14 13 18 18 C 1.76199 * 100.00013 * 180.02562 * 17 16 14 19 19 H 1.07991 * 119.99794 * 0.02562 * 18 17 16 20 20 C 1.38798 * 119.99771 * 180.02562 * 18 17 16 21 21 N 1.31633 * 120.00311 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99653 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47055 * 180.02562 * 22 20 18 24 24 H 1.48508 * 109.47016 * 299.99635 * 22 20 18 25 25 H 1.48495 * 109.47483 * 59.99992 * 22 20 18 26 26 C 1.47014 * 108.70511 * 24.35609 * 13 12 11 27 27 H 1.09005 * 109.88315 * 239.29631 * 26 13 12 28 28 C 1.52998 * 109.88541 * 118.12953 * 26 13 12 29 29 H 1.07995 * 120.00249 * 359.97438 * 1 2 3 30 30 H 1.08001 * 119.99665 * 179.97438 * 1 2 3 31 31 H 1.08002 * 120.00606 * 180.02562 * 2 1 3 32 32 H 1.09003 * 109.47025 * 5.00608 * 3 2 1 33 33 H 1.08995 * 109.47641 * 245.00385 * 3 2 1 34 34 H 1.09003 * 109.46412 * 60.00430 * 4 3 2 35 35 H 1.08995 * 109.47236 * 300.00830 * 4 3 2 36 36 H 1.08996 * 109.47018 * 60.00083 * 5 4 3 37 37 H 1.09007 * 109.46979 * 299.99971 * 5 4 3 38 38 H 0.97006 * 119.99878 * 359.97438 * 8 6 5 39 39 H 1.08994 * 111.00496 * 35.97093 * 11 9 8 40 40 H 1.09003 * 111.03753 * 272.13341 * 11 9 8 41 41 H 1.09002 * 110.36666 * 204.15234 * 12 11 9 42 42 H 1.09008 * 110.36407 * 81.83372 * 12 11 9 43 43 H 1.09005 * 109.46512 * 60.00633 * 16 14 13 44 44 H 1.08991 * 109.47135 * 300.00153 * 16 14 13 45 45 H 0.97001 * 119.99662 * 359.97438 * 21 20 18 46 46 H 1.09001 * 109.46601 * 61.45393 * 28 26 13 47 47 H 1.09000 * 109.47226 * 181.45101 * 28 26 13 48 48 H 1.08994 * 109.47222 * 301.45625 * 28 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 6 3.7995 2.6585 1.1820 6 6 4.7569 2.6858 2.3455 7 8 4.8210 1.7388 3.1004 8 7 5.5411 3.7630 2.5478 9 6 6.4713 3.7899 3.6792 10 1 6.0332 3.2998 4.5486 11 6 7.8204 3.1258 3.2966 12 6 8.7999 3.8285 4.2695 13 7 8.3134 5.2173 4.3572 14 6 9.0567 6.2902 4.6930 15 8 8.5491 7.3910 4.7337 16 6 10.5187 6.1222 5.0178 17 16 11.2348 7.7333 5.4272 18 6 12.8988 7.2545 5.7536 19 1 13.1888 6.2177 5.6690 20 6 13.8367 8.2099 6.1195 21 7 13.4831 9.4736 6.2231 22 14 15.6010 7.7024 6.4648 23 1 16.3975 8.9003 6.8337 24 1 15.6255 6.7281 7.5854 25 1 16.1824 7.0753 5.2508 26 6 6.8817 5.2373 4.0238 27 1 6.7104 5.8840 3.1633 28 6 6.0749 5.7380 5.2235 29 1 -0.5400 0.9352 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8501 -0.9353 -0.0004 32 1 1.3585 2.1317 0.0897 33 1 2.6212 1.4027 -0.9313 34 1 3.7399 0.5066 1.0919 35 1 2.4772 1.2356 2.1130 36 1 3.0943 3.4847 1.2718 37 1 4.3573 2.7564 0.2506 38 1 5.4895 4.5207 1.9442 39 1 8.0802 3.3383 2.2596 40 1 7.7929 2.0514 3.4780 41 1 9.8135 3.8061 3.8692 42 1 8.7676 3.3525 5.2497 43 1 11.0366 5.7026 4.1553 44 1 10.6268 5.4501 5.8690 45 1 12.5671 9.7372 6.0434 46 1 6.3798 6.7559 5.4669 47 1 5.0130 5.7257 4.9779 48 1 6.2573 5.0894 6.0803 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001290710819.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:50 Heat of formation + Delta-G solvation = -96.446826 kcal Electronic energy + Delta-G solvation = -26368.424935 eV Core-core repulsion = 22548.200204 eV Total energy + Delta-G solvation = -3820.224730 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.65413 -40.56751 -38.69811 -36.84969 -35.36840 -34.75372 -33.40291 -32.83479 -32.03991 -30.16916 -28.30646 -27.08184 -26.39107 -24.05947 -23.37218 -22.04683 -21.43881 -20.74708 -20.56892 -19.86204 -18.34872 -18.12045 -17.45651 -17.10478 -16.90491 -16.59301 -16.07379 -15.97737 -15.68861 -15.38471 -15.13136 -14.94741 -14.63725 -14.57726 -14.34611 -14.17319 -14.04398 -13.85842 -13.72895 -13.32569 -13.28049 -13.07134 -12.73953 -12.69786 -12.59597 -12.44243 -12.30687 -11.95733 -11.89592 -11.75323 -11.60202 -11.56345 -11.09970 -11.05765 -10.87759 -10.34112 -10.17746 -10.14199 -9.84108 -8.92858 -8.88254 -6.28401 1.09966 1.42682 1.44544 1.51359 1.60587 1.64805 1.78823 1.82528 2.27590 2.33790 3.02082 3.04471 3.22491 3.44254 3.72769 3.78779 3.85145 3.88908 4.06447 4.09686 4.10893 4.14943 4.22328 4.31634 4.35432 4.40012 4.49285 4.59633 4.64332 4.68343 4.73191 4.79393 4.85107 4.91318 4.95789 5.02972 5.09025 5.13281 5.25484 5.28171 5.39945 5.47741 5.63608 5.79953 5.92135 6.14457 6.24345 6.52123 6.99316 7.05776 7.24699 8.50599 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.035713 B = 0.001655 C = 0.001616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.829814 B =16917.753317 C =17317.792563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.165 4.165 3 C -0.091 4.091 4 C -0.096 4.096 5 C -0.134 4.134 6 C 0.514 3.486 7 O -0.580 6.580 8 N -0.712 5.712 9 C 0.148 3.852 10 H 0.097 0.903 11 C -0.131 4.131 12 C 0.092 3.908 13 N -0.610 5.610 14 C 0.550 3.450 15 O -0.557 6.557 16 C -0.102 4.102 17 S -0.191 6.191 18 C -0.615 4.615 19 H 0.075 0.925 20 C -0.017 4.017 21 N -0.912 5.912 22 Si 1.135 2.865 23 H -0.280 1.280 24 H -0.264 1.264 25 H -0.263 1.263 26 C 0.133 3.867 27 H 0.083 0.917 28 C -0.158 4.158 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.106 0.894 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.057 0.943 35 H 0.051 0.949 36 H 0.117 0.883 37 H 0.120 0.880 38 H 0.416 0.584 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.109 0.891 44 H 0.106 0.894 45 H 0.260 0.740 46 H 0.044 0.956 47 H 0.086 0.914 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.555 -20.114 -14.084 33.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.184 4.184 3 C -0.128 4.128 4 C -0.135 4.135 5 C -0.174 4.174 6 C 0.303 3.697 7 O -0.460 6.460 8 N -0.365 5.365 9 C 0.042 3.958 10 H 0.115 0.885 11 C -0.170 4.170 12 C -0.030 4.030 13 N -0.346 5.346 14 C 0.338 3.662 15 O -0.435 6.435 16 C -0.254 4.254 17 S 0.036 5.964 18 C -0.762 4.762 19 H 0.093 0.907 20 C -0.220 4.220 21 N -0.548 5.548 22 Si 0.953 3.047 23 H -0.205 1.205 24 H -0.189 1.189 25 H -0.187 1.187 26 C 0.029 3.971 27 H 0.101 0.899 28 C -0.216 4.216 29 H 0.120 0.880 30 H 0.118 0.882 31 H 0.124 0.876 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.135 0.865 37 H 0.138 0.862 38 H 0.253 0.747 39 H 0.107 0.893 40 H 0.116 0.884 41 H 0.109 0.891 42 H 0.102 0.898 43 H 0.127 0.873 44 H 0.125 0.875 45 H 0.071 0.929 46 H 0.063 0.937 47 H 0.105 0.895 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -21.786 -18.514 -13.042 31.424 hybrid contribution -0.841 -1.194 -0.385 1.511 sum -22.627 -19.708 -13.427 32.873 Atomic orbital electron populations 1.24012 0.96085 1.02425 1.01294 1.23111 0.96347 0.99092 0.99802 1.20774 0.98061 0.95365 0.98572 1.21211 0.97570 0.96337 0.98336 1.21749 0.97951 1.00921 0.96733 1.21335 0.80471 0.81255 0.86679 1.90711 1.69578 1.36756 1.48930 1.45898 1.40111 1.20623 1.29874 1.21772 0.90132 0.93160 0.90746 0.88486 1.23143 0.92875 1.00955 1.00050 1.22621 0.99751 0.79638 1.01012 1.48381 1.09955 1.07743 1.68503 1.19637 0.87335 0.83208 0.76037 1.90686 1.73515 1.26245 1.53048 1.23173 0.94690 1.01790 1.05700 1.85023 1.09986 1.11150 1.90256 1.24027 0.94956 0.99277 1.57943 0.90721 1.27808 1.09687 0.92292 0.92248 1.70924 1.20676 1.17928 1.45235 0.82732 0.68077 0.75879 0.78012 1.20518 1.18864 1.18725 1.21713 0.80067 0.96725 0.98575 0.89925 1.22084 1.00620 1.01289 0.97630 0.87982 0.88217 0.87578 0.90528 0.89659 0.92444 0.92990 0.86471 0.86205 0.74652 0.89263 0.88391 0.89081 0.89765 0.87259 0.87546 0.92870 0.93727 0.89521 0.92319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.92 14.32 67.78 0.97 -0.95 16 2 C -0.17 -1.67 9.52 25.65 0.24 -1.42 16 3 C -0.09 -0.68 5.66 29.85 0.17 -0.51 16 4 C -0.10 -1.02 4.49 30.59 0.14 -0.88 16 5 C -0.13 -0.94 5.70 29.85 0.17 -0.77 16 6 C 0.51 7.33 7.83 87.66 0.69 8.02 16 7 O -0.58 -13.49 15.71 -3.03 -0.05 -13.53 16 8 N -0.71 -8.29 5.21 -436.91 -2.28 -10.56 16 9 C 0.15 2.37 2.76 46.18 0.13 2.49 16 10 H 0.10 1.81 7.39 -2.38 -0.02 1.79 16 11 C -0.13 -1.94 6.77 31.99 0.22 -1.73 16 12 C 0.09 1.71 6.69 86.86 0.58 2.29 16 13 N -0.61 -15.89 3.06 -788.03 -2.41 -18.30 16 14 C 0.55 20.30 7.66 87.66 0.67 20.97 16 15 O -0.56 -25.17 14.91 -3.04 -0.05 -25.22 16 16 C -0.10 -4.07 5.16 71.24 0.37 -3.71 16 17 S -0.19 -10.48 19.60 -56.49 -1.11 -11.58 16 18 C -0.61 -35.31 9.50 67.95 0.65 -34.66 16 19 H 0.07 4.02 7.80 -2.92 -0.02 4.00 16 20 C -0.02 -0.99 5.49 84.86 0.47 -0.52 16 21 N -0.91 -57.81 13.67 21.65 0.30 -57.52 16 22 Si 1.14 48.98 29.92 68.60 2.05 51.04 16 23 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 24 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 25 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 26 C 0.13 2.77 3.21 45.35 0.15 2.92 16 27 H 0.08 1.69 7.70 -2.38 -0.02 1.67 16 28 C -0.16 -3.58 9.11 71.98 0.66 -2.92 16 29 H 0.10 0.81 7.84 -2.91 -0.02 0.79 16 30 H 0.10 0.83 8.06 -2.91 -0.02 0.81 16 31 H 0.11 1.07 8.06 -2.91 -0.02 1.04 16 32 H 0.08 0.45 7.79 -2.39 -0.02 0.44 16 33 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.06 0.77 8.10 -2.39 -0.02 0.75 16 35 H 0.05 0.75 8.10 -2.39 -0.02 0.73 16 36 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.12 0.31 8.14 -2.38 -0.02 0.29 16 38 H 0.42 2.76 8.33 -92.70 -0.77 1.99 16 39 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.09 1.60 7.48 -2.39 -0.02 1.59 16 42 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 43 H 0.11 3.95 7.85 -2.39 -0.02 3.93 16 44 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 45 H 0.26 17.16 7.12 -92.71 -0.66 16.49 16 46 H 0.04 1.33 6.89 -2.39 -0.02 1.31 16 47 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 48 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -81.67 409.04 2.99 -78.68 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: 0.27 Total: 18.38 kcal Atomic # 6 Polarization: -17.64 SS G_CDS: 6.25 Total: -11.39 kcal Atomic # 7 Polarization: -81.99 SS G_CDS: -4.39 Total: -86.38 kcal Atomic # 8 Polarization: -38.66 SS G_CDS: -0.09 Total: -38.75 kcal Atomic # 14 Polarization: 48.98 SS G_CDS: 2.05 Total: 51.04 kcal Atomic # 16 Polarization: -10.48 SS G_CDS: -1.11 Total: -11.58 kcal Total: -81.67 2.99 -78.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001290710819.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.764 kcal (2) G-P(sol) polarization free energy of solvation -81.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds