Wall clock time and date at job start Sat Apr 11 2020 06:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 110.05691 * 2 1 4 4 C 1.54080 * 110.16330 * 238.52733 * 2 1 3 5 5 C 1.54272 * 106.62316 * 240.88047 * 4 2 1 6 6 C 1.54893 * 104.19450 * 336.27970 * 5 4 2 7 7 C 1.54267 * 110.02992 * 121.41033 * 2 1 3 8 8 H 1.09001 * 110.48959 * 24.09046 * 7 2 1 9 9 C 1.53000 * 110.49042 * 261.57292 * 7 2 1 10 10 C 1.50698 * 109.47603 * 176.83730 * 9 7 2 11 11 O 1.21280 * 119.99714 * 0.02562 * 10 9 7 12 12 N 1.34772 * 120.00104 * 179.97438 * 10 9 7 13 13 C 1.47581 * 134.49157 * 180.02562 * 12 10 9 14 14 C 1.53946 * 86.11834 * 155.36344 * 13 12 10 15 15 N 1.46497 * 113.74152 * 137.95159 * 14 13 12 16 16 C 1.34777 * 119.99525 * 156.92208 * 15 14 13 17 17 O 1.21283 * 120.00463 * 0.02562 * 16 15 14 18 18 C 1.50700 * 119.99675 * 179.72583 * 16 15 14 19 19 S 1.80997 * 109.47151 * 180.27780 * 18 16 15 20 20 C 1.76196 * 100.00314 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00018 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00626 * 179.97438 * 20 19 18 23 23 N 1.31633 * 119.99674 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00584 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47012 * 89.99727 * 24 22 20 26 26 H 1.48501 * 109.47302 * 209.99797 * 24 22 20 27 27 H 1.48501 * 109.46788 * 330.00118 * 24 22 20 28 28 C 1.47805 * 134.45858 * 359.87371 * 12 10 9 29 29 H 1.09004 * 109.47633 * 298.58461 * 1 2 3 30 30 H 1.09000 * 109.46979 * 58.59083 * 1 2 3 31 31 H 1.09004 * 109.47095 * 178.59009 * 1 2 3 32 32 H 1.09004 * 110.11437 * 121.53744 * 4 2 1 33 33 H 1.08999 * 109.96962 * 0.14100 * 4 2 1 34 34 H 1.09002 * 110.48531 * 217.60177 * 5 4 2 35 35 H 1.09002 * 110.48368 * 94.95694 * 5 4 2 36 36 H 1.08995 * 110.75633 * 279.62854 * 6 5 4 37 37 H 1.09001 * 110.91346 * 156.32989 * 6 5 4 38 38 H 1.09006 * 109.46831 * 56.84585 * 9 7 2 39 39 H 1.08993 * 109.47345 * 296.84625 * 9 7 2 40 40 H 1.09006 * 113.76919 * 41.05941 * 13 12 10 41 41 H 1.09005 * 113.87115 * 269.67661 * 13 12 10 42 42 H 1.08998 * 113.73561 * 269.15705 * 14 13 12 43 43 H 0.97000 * 120.00580 * 336.92954 * 15 14 13 44 44 H 1.09009 * 109.47352 * 300.27556 * 18 16 15 45 45 H 1.08998 * 109.47585 * 60.27844 * 18 16 15 46 46 H 0.97003 * 120.00297 * 179.97438 * 23 22 20 47 47 H 1.09002 * 113.76915 * 90.37682 * 28 12 10 48 48 H 1.08999 * 113.84170 * 318.91588 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0611 -0.7551 -1.2336 5 6 2.8885 -1.9434 -0.7012 6 6 3.3131 -1.5032 0.7218 7 6 2.0583 -0.7554 1.2370 8 1 1.3133 -1.4643 1.5982 9 6 2.4391 0.2299 2.3439 10 6 2.8781 -0.5335 3.5668 11 8 2.8861 -1.7462 3.5541 12 7 3.2627 0.1314 4.6742 13 6 3.7390 -0.2740 6.0109 14 6 4.4250 1.1029 6.0691 15 7 4.3014 1.7691 7.3679 16 6 5.1950 2.7109 7.7299 17 8 6.1011 3.0072 6.9801 18 6 5.0643 3.4006 9.0634 19 16 6.3990 4.6086 9.2513 20 6 6.0122 5.2463 10.8476 21 1 5.1573 4.8672 11.3879 22 6 6.8068 6.2349 11.4113 23 7 7.8496 6.6959 10.7534 24 14 6.3971 6.9105 13.1040 25 1 7.0947 6.1068 14.1397 26 1 6.8406 8.3249 13.1931 27 1 4.9305 6.8366 13.3247 28 6 3.3794 1.5598 5.0359 29 1 -0.3634 0.4917 0.9024 30 1 -0.3633 0.5356 -0.8771 31 1 -0.3633 -1.0274 -0.0253 32 1 2.6928 -0.0985 -1.8318 33 1 1.2277 -1.1198 -1.8341 34 1 3.7655 -2.1084 -1.3271 35 1 2.2764 -2.8442 -0.6552 36 1 4.1717 -0.8331 0.6788 37 1 3.5313 -2.3685 1.3479 38 1 1.5766 0.8485 2.5921 39 1 3.2551 0.8653 1.9998 40 1 4.4361 -1.1118 5.9935 41 1 2.9420 -0.3991 6.7440 42 1 5.4462 1.1008 5.6880 43 1 3.5766 1.5323 7.9675 44 1 4.1024 3.9109 9.1159 45 1 5.1278 2.6619 9.8624 46 1 8.4047 7.3871 11.1472 47 1 2.4752 1.9756 5.4805 48 1 3.7899 2.1833 4.2417 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001297002572.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:56 Heat of formation + Delta-G solvation = -61.625402 kcal Electronic energy + Delta-G solvation = -26253.085817 eV Core-core repulsion = 22434.371057 eV Total energy + Delta-G solvation = -3818.714760 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.84787 -39.59000 -38.64442 -37.53571 -33.78155 -32.46837 -32.09051 -31.52236 -30.04347 -28.41002 -26.76480 -26.18915 -25.52497 -24.60622 -22.04091 -20.86059 -20.62548 -19.84008 -19.19568 -17.90579 -17.28379 -16.95622 -16.46285 -16.29771 -15.42687 -15.33020 -15.17442 -14.90217 -14.84009 -14.37429 -14.00604 -13.70302 -13.52880 -13.47211 -13.23251 -13.09013 -13.06150 -12.68321 -12.56045 -12.41125 -12.17314 -12.01595 -11.50030 -11.29498 -11.27951 -11.09716 -11.06627 -11.04666 -10.92081 -10.84020 -10.80056 -10.71692 -10.04395 -9.86176 -9.52660 -9.16808 -9.09624 -8.99827 -8.29631 -6.55286 -6.25801 -3.96948 2.34679 2.38011 2.90131 3.00214 3.19705 3.25534 3.29163 3.64013 3.93895 4.16104 4.17330 4.21769 4.32142 4.41526 4.59908 4.77941 4.84706 4.90968 4.96936 5.02589 5.06225 5.08511 5.09686 5.14603 5.18136 5.21193 5.25754 5.31224 5.37353 5.47157 5.50415 5.52497 5.57043 5.66397 5.71872 5.80035 5.81619 5.82752 5.84146 6.00537 6.06717 6.07029 6.17877 6.42293 7.34345 7.53014 7.55978 7.88675 8.30999 8.45000 9.19737 10.81572 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.030032 B = 0.001596 C = 0.001581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.121860 B =17544.915064 C =17700.935480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 H 0.073 0.927 4 C -0.120 4.120 5 C -0.125 4.125 6 C -0.119 4.119 7 C -0.072 4.072 8 H 0.083 0.917 9 C -0.128 4.128 10 C 0.540 3.460 11 O -0.537 6.537 12 N -0.646 5.646 13 C 0.099 3.901 14 C 0.118 3.882 15 N -0.729 5.729 16 C 0.535 3.465 17 O -0.513 6.513 18 C -0.155 4.155 19 S -0.059 6.059 20 C -0.537 4.537 21 H 0.073 0.927 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 C 0.085 3.915 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.127 0.873 43 H 0.402 0.598 44 H 0.091 0.909 45 H 0.091 0.909 46 H 0.269 0.731 47 H 0.091 0.909 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.156 -14.777 -19.192 28.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 H 0.091 0.909 4 C -0.158 4.158 5 C -0.163 4.163 6 C -0.156 4.156 7 C -0.091 4.091 8 H 0.101 0.899 9 C -0.168 4.168 10 C 0.330 3.670 11 O -0.414 6.414 12 N -0.383 5.383 13 C -0.024 4.024 14 C 0.011 3.989 15 N -0.384 5.384 16 C 0.322 3.678 17 O -0.386 6.386 18 C -0.305 4.305 19 S 0.167 5.833 20 C -0.685 4.685 21 H 0.091 0.909 22 C -0.135 4.135 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.207 1.207 27 H -0.197 1.197 28 C -0.039 4.039 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.108 0.892 41 H 0.106 0.894 42 H 0.145 0.855 43 H 0.237 0.763 44 H 0.110 0.890 45 H 0.110 0.890 46 H 0.079 0.921 47 H 0.109 0.891 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.537 -14.908 -20.651 28.844 hybrid contribution -1.748 0.135 2.332 2.918 sum -15.285 -14.773 -18.319 28.062 Atomic orbital electron populations 1.21886 0.94970 1.01811 1.01556 1.21852 0.95668 0.99449 0.94353 0.90881 1.22253 0.99398 0.97109 0.97051 1.22345 0.99428 0.97936 0.96557 1.22570 0.96724 1.00626 0.95695 1.21846 0.98297 0.96072 0.92852 0.89902 1.21720 1.02907 0.99160 0.93034 1.20397 0.75861 0.87650 0.83082 1.90697 1.53787 1.13857 1.83042 1.49833 1.66821 1.09215 1.12413 1.23497 0.97439 0.97972 0.83494 1.22903 1.00733 0.91057 0.84187 1.45934 1.32055 1.41536 1.18831 1.20401 0.80806 0.78426 0.88172 1.90716 1.32334 1.62296 1.53249 1.23545 1.07383 1.03737 0.95862 1.85410 1.31660 1.42340 1.23875 1.22862 1.16566 1.25899 1.03174 0.90882 1.24992 0.94477 0.95580 0.98494 1.70014 1.15176 1.27412 1.37633 0.86164 0.78729 0.78191 0.82395 1.20253 1.20738 1.19696 1.23879 0.99154 0.83150 0.97704 0.92744 0.92716 0.92593 0.91915 0.91837 0.91844 0.91765 0.91923 0.90441 0.89007 0.88754 0.89214 0.89357 0.85480 0.76334 0.89037 0.89034 0.92141 0.89075 0.89167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 8.85 37.15 0.33 -0.52 16 2 C -0.09 -0.61 3.08 -89.40 -0.28 -0.88 16 3 H 0.07 0.44 7.84 -51.93 -0.41 0.04 16 4 C -0.12 -0.76 6.47 -25.50 -0.16 -0.93 16 5 C -0.13 -0.89 6.83 -25.07 -0.17 -1.07 16 6 C -0.12 -1.02 5.69 -24.73 -0.14 -1.16 16 7 C -0.07 -0.57 1.99 -88.96 -0.18 -0.75 16 8 H 0.08 0.77 7.67 -51.93 -0.40 0.37 16 9 C -0.13 -0.98 4.80 -27.88 -0.13 -1.12 16 10 C 0.54 5.75 7.86 -10.99 -0.09 5.67 16 11 O -0.54 -7.50 15.33 5.56 0.09 -7.42 16 12 N -0.65 -6.10 3.61 -178.33 -0.64 -6.74 16 13 C 0.10 0.86 8.59 -2.97 -0.03 0.83 16 14 C 0.12 1.16 4.40 -70.15 -0.31 0.85 16 15 N -0.73 -8.00 5.37 -55.35 -0.30 -8.29 16 16 C 0.54 8.88 7.85 -10.98 -0.09 8.79 16 17 O -0.51 -10.62 15.49 5.55 0.09 -10.54 16 18 C -0.15 -2.86 6.16 36.01 0.22 -2.64 16 19 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 20 C -0.54 -14.84 9.50 30.94 0.29 -14.54 16 21 H 0.07 1.90 7.80 -52.48 -0.41 1.50 16 22 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 23 N -0.87 -25.61 13.22 55.49 0.73 -24.87 16 24 Si 0.92 20.92 29.55 -169.99 -5.02 15.90 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 28 C 0.09 0.70 8.43 -2.85 -0.02 0.67 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.37 7.68 -51.93 -0.40 -0.03 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.53 8.00 -51.93 -0.42 0.11 16 37 H 0.08 0.82 7.16 -51.93 -0.37 0.45 16 38 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.09 0.64 8.06 -51.93 -0.42 0.22 16 40 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.09 0.62 8.11 -51.93 -0.42 0.20 16 42 H 0.13 1.50 7.51 -51.93 -0.39 1.11 16 43 H 0.40 3.19 8.71 -40.82 -0.36 2.84 16 44 H 0.09 1.54 8.14 -51.91 -0.42 1.12 16 45 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 46 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 47 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 405.00 15.07 6.10 6.10 Total: -1.00 -34.78 405.00 -10.21 -44.98 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -8.19 Total: -0.55 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -0.84 Total: -4.82 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: -0.21 Total: -39.91 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: 0.17 Total: -17.95 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.78 -10.21 -44.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001297002572.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.641 kcal (2) G-P(sol) polarization free energy of solvation -34.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds