Wall clock time and date at job start Sat Apr 11 2020 06:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 110.05691 * 2 1 4 4 C 1.54080 * 110.16330 * 238.52733 * 2 1 3 5 5 C 1.54272 * 106.62316 * 240.88047 * 4 2 1 6 6 C 1.54893 * 104.19450 * 336.27970 * 5 4 2 7 7 C 1.54267 * 110.02992 * 121.41033 * 2 1 3 8 8 H 1.09001 * 110.48959 * 24.09046 * 7 2 1 9 9 C 1.53000 * 110.49042 * 261.57292 * 7 2 1 10 10 C 1.50698 * 109.47603 * 176.83730 * 9 7 2 11 11 O 1.21280 * 119.99714 * 0.02562 * 10 9 7 12 12 N 1.34772 * 120.00104 * 179.97438 * 10 9 7 13 13 C 1.47581 * 134.49157 * 180.02562 * 12 10 9 14 14 C 1.53946 * 86.11834 * 155.36344 * 13 12 10 15 15 N 1.46497 * 113.74152 * 137.95159 * 14 13 12 16 16 C 1.34777 * 119.99525 * 156.92208 * 15 14 13 17 17 O 1.21283 * 120.00463 * 0.02562 * 16 15 14 18 18 C 1.50700 * 119.99675 * 179.72583 * 16 15 14 19 19 S 1.80997 * 109.47151 * 180.27780 * 18 16 15 20 20 C 1.76196 * 100.00314 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00018 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00626 * 179.97438 * 20 19 18 23 23 N 1.31633 * 119.99674 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00584 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47012 * 89.99727 * 24 22 20 26 26 H 1.48501 * 109.47302 * 209.99797 * 24 22 20 27 27 H 1.48501 * 109.46788 * 330.00118 * 24 22 20 28 28 C 1.47805 * 134.45858 * 359.87371 * 12 10 9 29 29 H 1.09004 * 109.47633 * 298.58461 * 1 2 3 30 30 H 1.09000 * 109.46979 * 58.59083 * 1 2 3 31 31 H 1.09004 * 109.47095 * 178.59009 * 1 2 3 32 32 H 1.09004 * 110.11437 * 121.53744 * 4 2 1 33 33 H 1.08999 * 109.96962 * 0.14100 * 4 2 1 34 34 H 1.09002 * 110.48531 * 217.60177 * 5 4 2 35 35 H 1.09002 * 110.48368 * 94.95694 * 5 4 2 36 36 H 1.08995 * 110.75633 * 279.62854 * 6 5 4 37 37 H 1.09001 * 110.91346 * 156.32989 * 6 5 4 38 38 H 1.09006 * 109.46831 * 56.84585 * 9 7 2 39 39 H 1.08993 * 109.47345 * 296.84625 * 9 7 2 40 40 H 1.09006 * 113.76919 * 41.05941 * 13 12 10 41 41 H 1.09005 * 113.87115 * 269.67661 * 13 12 10 42 42 H 1.08998 * 113.73561 * 269.15705 * 14 13 12 43 43 H 0.97000 * 120.00580 * 336.92954 * 15 14 13 44 44 H 1.09009 * 109.47352 * 300.27556 * 18 16 15 45 45 H 1.08998 * 109.47585 * 60.27844 * 18 16 15 46 46 H 0.97003 * 120.00297 * 179.97438 * 23 22 20 47 47 H 1.09002 * 113.76915 * 90.37682 * 28 12 10 48 48 H 1.08999 * 113.84170 * 318.91588 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0611 -0.7551 -1.2336 5 6 2.8885 -1.9434 -0.7012 6 6 3.3131 -1.5032 0.7218 7 6 2.0583 -0.7554 1.2370 8 1 1.3133 -1.4643 1.5982 9 6 2.4391 0.2299 2.3439 10 6 2.8781 -0.5335 3.5668 11 8 2.8861 -1.7462 3.5541 12 7 3.2627 0.1314 4.6742 13 6 3.7390 -0.2740 6.0109 14 6 4.4250 1.1029 6.0691 15 7 4.3014 1.7691 7.3679 16 6 5.1950 2.7109 7.7299 17 8 6.1011 3.0072 6.9801 18 6 5.0643 3.4006 9.0634 19 16 6.3990 4.6086 9.2513 20 6 6.0122 5.2463 10.8476 21 1 5.1573 4.8672 11.3879 22 6 6.8068 6.2349 11.4113 23 7 7.8496 6.6959 10.7534 24 14 6.3971 6.9105 13.1040 25 1 7.0947 6.1068 14.1397 26 1 6.8406 8.3249 13.1931 27 1 4.9305 6.8366 13.3247 28 6 3.3794 1.5598 5.0359 29 1 -0.3634 0.4917 0.9024 30 1 -0.3633 0.5356 -0.8771 31 1 -0.3633 -1.0274 -0.0253 32 1 2.6928 -0.0985 -1.8318 33 1 1.2277 -1.1198 -1.8341 34 1 3.7655 -2.1084 -1.3271 35 1 2.2764 -2.8442 -0.6552 36 1 4.1717 -0.8331 0.6788 37 1 3.5313 -2.3685 1.3479 38 1 1.5766 0.8485 2.5921 39 1 3.2551 0.8653 1.9998 40 1 4.4361 -1.1118 5.9935 41 1 2.9420 -0.3991 6.7440 42 1 5.4462 1.1008 5.6880 43 1 3.5766 1.5323 7.9675 44 1 4.1024 3.9109 9.1159 45 1 5.1278 2.6619 9.8624 46 1 8.4047 7.3871 11.1472 47 1 2.4752 1.9756 5.4805 48 1 3.7899 2.1833 4.2417 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001297002572.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:55 Heat of formation + Delta-G solvation = -84.202260 kcal Electronic energy + Delta-G solvation = -26254.064823 eV Core-core repulsion = 22434.371057 eV Total energy + Delta-G solvation = -3819.693766 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.69071 -40.54395 -39.55437 -38.41233 -34.91709 -34.55469 -32.77465 -32.05579 -31.24167 -29.44507 -27.65454 -27.43735 -26.80242 -25.20474 -22.95886 -21.79932 -21.49341 -20.38935 -20.03697 -19.71740 -18.12685 -18.01577 -17.48540 -17.19394 -16.85431 -16.39209 -16.34170 -15.93414 -15.85746 -15.71204 -14.86871 -14.68518 -14.56412 -14.42566 -14.15835 -14.06334 -13.78381 -13.67184 -13.54482 -13.24580 -13.13764 -13.01928 -12.87627 -12.78774 -12.59166 -12.35226 -11.90008 -11.84697 -11.71248 -11.62236 -11.51237 -11.44932 -11.22858 -11.12125 -11.04693 -10.75478 -10.23646 -10.17530 -9.80335 -8.63035 -8.32551 -6.09686 1.27174 1.44031 1.46125 1.55870 1.57298 1.59751 1.72252 2.29040 2.38299 3.01974 3.22120 3.34730 3.43762 3.63365 3.72514 3.77864 3.88015 3.97197 4.10382 4.28582 4.34260 4.36660 4.39476 4.42455 4.50190 4.53783 4.56591 4.57443 4.61525 4.69537 4.72426 4.78767 4.84364 4.91352 4.94352 5.03337 5.11184 5.18630 5.28527 5.33951 5.36231 5.43306 5.44815 5.50743 5.60305 6.22183 6.47114 6.61026 7.08723 7.09427 7.24204 8.76404 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.030032 B = 0.001596 C = 0.001581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.121860 B =17544.915064 C =17700.935480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 H 0.082 0.918 4 C -0.119 4.119 5 C -0.125 4.125 6 C -0.120 4.120 7 C -0.070 4.070 8 H 0.065 0.935 9 C -0.123 4.123 10 C 0.534 3.466 11 O -0.578 6.578 12 N -0.648 5.648 13 C 0.103 3.897 14 C 0.113 3.887 15 N -0.699 5.699 16 C 0.541 3.459 17 O -0.561 6.561 18 C -0.131 4.131 19 S -0.152 6.152 20 C -0.546 4.546 21 H 0.084 0.916 22 C 0.014 3.986 23 N -0.911 5.911 24 Si 0.996 3.004 25 H -0.270 1.270 26 H -0.279 1.279 27 H -0.257 1.257 28 C 0.095 3.905 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.050 0.950 38 H 0.112 0.888 39 H 0.107 0.893 40 H 0.082 0.918 41 H 0.114 0.886 42 H 0.105 0.895 43 H 0.422 0.578 44 H 0.115 0.885 45 H 0.111 0.889 46 H 0.270 0.730 47 H 0.115 0.885 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.716 -14.560 -18.776 29.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.109 4.109 3 H 0.101 0.899 4 C -0.157 4.157 5 C -0.162 4.162 6 C -0.158 4.158 7 C -0.089 4.089 8 H 0.084 0.916 9 C -0.163 4.163 10 C 0.326 3.674 11 O -0.458 6.458 12 N -0.384 5.384 13 C -0.020 4.020 14 C 0.007 3.993 15 N -0.354 5.354 16 C 0.327 3.673 17 O -0.438 6.438 18 C -0.282 4.282 19 S 0.075 5.925 20 C -0.693 4.693 21 H 0.102 0.898 22 C -0.191 4.191 23 N -0.548 5.548 24 Si 0.818 3.182 25 H -0.195 1.195 26 H -0.205 1.205 27 H -0.181 1.181 28 C -0.028 4.028 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.130 0.870 39 H 0.125 0.875 40 H 0.100 0.900 41 H 0.132 0.868 42 H 0.123 0.877 43 H 0.260 0.740 44 H 0.133 0.867 45 H 0.129 0.871 46 H 0.079 0.921 47 H 0.133 0.867 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -16.150 -14.716 -20.227 29.774 hybrid contribution -0.988 -0.065 2.154 2.371 sum -17.138 -14.780 -18.073 28.962 Atomic orbital electron populations 1.21877 0.94398 1.01684 1.02149 1.21834 0.96108 0.99595 0.93350 0.89923 1.22260 0.99540 0.96713 0.97155 1.22343 0.99774 0.98316 0.95780 1.22529 0.97266 0.99759 0.96216 1.21797 0.97410 0.95981 0.93665 0.91621 1.21758 1.04027 0.98944 0.91522 1.20933 0.75284 0.87357 0.83872 1.90684 1.55668 1.15681 1.83730 1.49878 1.66139 1.09917 1.12457 1.23561 0.97878 0.96671 0.83864 1.22907 1.00439 0.92188 0.83793 1.45562 1.30938 1.39418 1.19475 1.20055 0.81058 0.79132 0.87084 1.90713 1.34606 1.64201 1.54313 1.23389 1.04804 1.02186 0.97845 1.85584 1.36683 1.45758 1.24460 1.23219 1.16804 1.25981 1.03346 0.89802 1.26093 0.94173 0.95884 1.02949 1.70180 1.16557 1.28236 1.39800 0.84983 0.79185 0.77282 0.76720 1.19498 1.20475 1.18117 1.23934 0.99233 0.82516 0.97115 0.92423 0.91827 0.93136 0.91220 0.91214 0.91380 0.92153 0.91906 0.93117 0.86959 0.87510 0.89963 0.86828 0.87725 0.73999 0.86733 0.87089 0.92069 0.86725 0.88487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 8.85 71.98 0.64 -0.78 16 2 C -0.09 -1.01 3.08 -10.00 -0.03 -1.04 16 3 H 0.08 0.79 7.84 -2.39 -0.02 0.77 16 4 C -0.12 -1.34 6.47 31.39 0.20 -1.13 16 5 C -0.12 -1.74 6.83 31.67 0.22 -1.52 16 6 C -0.12 -2.09 5.69 31.89 0.18 -1.90 16 7 C -0.07 -1.05 1.99 -9.72 -0.02 -1.07 16 8 H 0.07 1.23 7.67 -2.39 -0.02 1.21 16 9 C -0.12 -1.68 4.80 29.85 0.14 -1.54 16 10 C 0.53 10.88 7.86 87.66 0.69 11.57 16 11 O -0.58 -16.32 15.33 -3.03 -0.05 -16.37 16 12 N -0.65 -11.06 3.61 -836.52 -3.02 -14.08 16 13 C 0.10 1.58 8.59 86.49 0.74 2.32 16 14 C 0.11 2.03 4.40 46.74 0.21 2.24 16 15 N -0.70 -13.58 5.37 -447.41 -2.40 -15.99 16 16 C 0.54 17.26 7.85 87.66 0.69 17.95 16 17 O -0.56 -23.46 15.49 -3.04 -0.05 -23.51 16 18 C -0.13 -4.65 6.16 71.24 0.44 -4.22 16 19 S -0.15 -8.04 20.57 -56.49 -1.16 -9.20 16 20 C -0.55 -30.06 9.50 67.95 0.65 -29.41 16 21 H 0.08 4.26 7.80 -2.91 -0.02 4.23 16 22 C 0.01 0.77 5.49 84.86 0.47 1.23 16 23 N -0.91 -54.83 13.22 21.65 0.29 -54.55 16 24 Si 1.00 42.47 29.55 68.60 2.03 44.49 16 25 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 26 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 27 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 28 C 0.10 1.30 8.43 86.44 0.73 2.03 16 29 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 30 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 32 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.07 0.70 7.68 -2.39 -0.02 0.69 16 34 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.06 1.06 8.00 -2.39 -0.02 1.04 16 37 H 0.05 1.14 7.16 -2.39 -0.02 1.13 16 38 H 0.11 1.09 8.14 -2.38 -0.02 1.07 16 39 H 0.11 1.22 8.06 -2.39 -0.02 1.20 16 40 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 41 H 0.11 1.21 8.11 -2.38 -0.02 1.19 16 42 H 0.10 2.45 7.51 -2.39 -0.02 2.44 16 43 H 0.42 5.08 8.71 -92.71 -0.81 4.28 16 44 H 0.11 3.56 8.14 -2.39 -0.02 3.54 16 45 H 0.11 3.53 8.14 -2.40 -0.02 3.51 16 46 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 47 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 48 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -78.78 405.00 1.71 -77.07 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: 0.14 Total: 17.40 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: 5.93 Total: -5.27 kcal Atomic # 7 Polarization: -79.48 SS G_CDS: -5.14 Total: -84.62 kcal Atomic # 8 Polarization: -39.78 SS G_CDS: -0.09 Total: -39.88 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.49 kcal Atomic # 16 Polarization: -8.04 SS G_CDS: -1.16 Total: -9.20 kcal Total: -78.78 1.71 -77.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001297002572.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.130 kcal (2) G-P(sol) polarization free energy of solvation -78.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds