Wall clock time and date at job start Sat Apr 11 2020 06:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 110.05197 * 2 1 4 4 C 1.54266 * 110.03079 * 121.41334 * 2 1 3 5 5 C 1.54894 * 104.31305 * 95.60642 * 4 2 1 6 6 C 1.55238 * 102.58338 * 37.93170 * 5 4 2 7 7 C 1.53869 * 110.02962 * 238.57962 * 2 1 3 8 8 H 1.08999 * 110.04012 * 0.02562 * 7 2 1 9 9 C 1.53007 * 110.03216 * 121.43454 * 7 2 1 10 10 C 1.50698 * 109.47316 * 184.99928 * 9 7 2 11 11 O 1.21279 * 119.99697 * 359.97438 * 10 9 7 12 12 N 1.34779 * 120.00029 * 179.97438 * 10 9 7 13 13 C 1.47070 * 136.05643 * 359.63068 * 12 10 9 14 14 C 1.53756 * 87.88696 * 152.95916 * 13 12 10 15 15 N 1.46501 * 114.08065 * 139.77546 * 14 13 12 16 16 C 1.34775 * 119.99629 * 111.56451 * 15 14 13 17 17 O 1.21281 * 120.00200 * 0.02562 * 16 15 14 18 18 C 1.50702 * 120.00176 * 179.97438 * 16 15 14 19 19 S 1.81005 * 109.47370 * 180.02562 * 18 16 15 20 20 C 1.76196 * 100.00095 * 179.97438 * 19 18 16 21 21 H 1.08004 * 119.99875 * 0.02562 * 20 19 18 22 22 C 1.38791 * 120.00153 * 179.97438 * 20 19 18 23 23 N 1.31634 * 120.00234 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 119.99837 * 0.02562 * 22 20 19 25 25 H 1.48506 * 109.47026 * 90.00157 * 24 22 20 26 26 H 1.48501 * 109.47247 * 209.99650 * 24 22 20 27 27 H 1.48492 * 109.47493 * 329.99959 * 24 22 20 28 28 C 1.47059 * 136.05817 * 179.97438 * 12 10 9 29 29 H 1.08999 * 109.47517 * 300.04128 * 1 2 3 30 30 H 1.08997 * 109.47176 * 60.04047 * 1 2 3 31 31 H 1.09002 * 109.47240 * 180.02562 * 1 2 3 32 32 H 1.09002 * 110.48629 * 214.35395 * 4 2 1 33 33 H 1.08998 * 110.48744 * 336.86299 * 4 2 1 34 34 H 1.08996 * 110.75388 * 156.31523 * 5 4 2 35 35 H 1.08993 * 110.76071 * 279.69749 * 5 4 2 36 36 H 1.09005 * 110.46917 * 203.39204 * 6 5 4 37 37 H 1.09007 * 110.58541 * 80.83124 * 6 5 4 38 38 H 1.09008 * 109.46690 * 305.00203 * 9 7 2 39 39 H 1.08999 * 109.47013 * 64.99436 * 9 7 2 40 40 H 1.08999 * 113.46370 * 267.69764 * 13 12 10 41 41 H 1.09001 * 113.46717 * 38.12682 * 13 12 10 42 42 H 1.08990 * 114.57502 * 272.66115 * 14 13 12 43 43 H 0.96995 * 120.00801 * 291.55796 * 15 14 13 44 44 H 1.08999 * 109.46994 * 299.99885 * 18 16 15 45 45 H 1.08997 * 109.47224 * 60.00158 * 18 16 15 46 46 H 0.96998 * 119.99949 * 180.02562 * 23 22 20 47 47 H 1.09000 * 113.47171 * 321.87180 * 28 12 10 48 48 H 1.09011 * 113.46182 * 92.30798 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9037 1.0239 0.0000 4 6 2.0584 -0.7554 1.2369 5 6 2.3273 -2.1915 0.7226 6 6 2.8874 -1.9407 -0.7034 7 6 2.0570 -0.7536 -1.2336 8 1 1.2229 -1.1190 -1.8326 9 6 2.9409 0.1702 -2.0741 10 6 3.3497 -0.5397 -3.3390 11 8 2.9718 -1.6731 -3.5475 12 7 4.1353 0.0850 -4.2386 13 6 4.7710 1.4063 -4.3525 14 6 5.8497 0.7487 -5.2288 15 7 6.2660 1.5610 -6.3747 16 6 7.5061 2.0873 -6.4126 17 8 8.2777 1.8881 -5.4983 18 6 7.9347 2.9224 -7.5916 19 16 9.6396 3.4796 -7.3485 20 6 9.8735 4.4042 -8.8301 21 1 9.0723 4.4821 -9.5502 22 6 11.0869 5.0333 -9.0712 23 7 11.2615 5.7245 -10.1778 24 14 12.4723 4.8992 -7.8254 25 1 13.3080 3.7127 -8.1403 26 1 13.3101 6.1240 -7.8830 27 1 11.9004 4.7543 -6.4627 28 6 4.7292 -0.2526 -5.5409 29 1 -0.3634 0.5145 0.8896 30 1 -0.3633 0.5132 -0.8903 31 1 -0.3634 -1.0277 0.0005 32 1 2.9811 -0.3000 1.5967 33 1 1.3070 -0.7674 2.0264 34 1 3.0658 -2.6936 1.3475 35 1 1.4020 -2.7658 0.6788 36 1 2.7401 -2.8198 -1.3309 37 1 3.9443 -1.6775 -0.6592 38 1 2.3851 1.0731 -2.3275 39 1 3.8305 0.4391 -1.5045 40 1 4.1627 2.1359 -4.8871 41 1 5.1521 1.7878 -3.4052 42 1 6.6868 0.3240 -4.6749 43 1 5.6492 1.7200 -7.1062 44 1 7.8743 2.3249 -8.5012 45 1 7.2785 3.7881 -7.6814 46 1 12.1096 6.1639 -10.3465 47 1 5.0748 -1.2843 -5.6061 48 1 4.1098 0.0395 -6.3891 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001297002573.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:58 Heat of formation + Delta-G solvation = -79.280615 kcal Electronic energy + Delta-G solvation = -26300.366029 eV Core-core repulsion = 22480.885682 eV Total energy + Delta-G solvation = -3819.480348 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.81242 -40.60293 -39.67246 -38.50170 -34.98454 -34.64270 -32.77407 -31.87633 -31.32662 -29.53887 -27.83504 -27.35710 -26.89749 -25.27175 -23.06826 -21.86183 -21.53984 -20.24000 -20.09830 -19.73355 -18.15685 -18.02508 -17.55922 -17.19566 -17.07080 -16.44697 -16.34900 -16.10069 -15.86791 -15.67438 -15.01940 -14.77468 -14.59904 -14.43776 -14.26713 -14.13408 -13.79439 -13.57336 -13.49970 -13.32698 -13.31346 -13.11805 -12.99333 -12.92072 -12.62533 -12.20911 -11.85511 -11.84753 -11.81236 -11.63567 -11.48484 -11.45893 -11.30203 -11.15052 -11.10521 -10.81716 -10.49950 -10.16863 -9.83443 -8.96221 -8.49349 -6.19562 1.00329 1.33448 1.44955 1.52128 1.53256 1.55525 1.72344 2.26164 2.35189 2.74847 2.89268 3.20276 3.41348 3.64344 3.70299 3.74854 3.84346 3.89564 4.06876 4.27254 4.29592 4.33873 4.38331 4.45194 4.49957 4.52588 4.53371 4.55385 4.62171 4.66562 4.73394 4.78845 4.85506 4.89413 4.94277 5.02573 5.10048 5.22639 5.25158 5.31736 5.38180 5.40436 5.48880 5.59920 5.72875 6.14219 6.42764 6.62871 6.96261 7.06381 7.18086 8.62822 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026903 B = 0.001670 C = 0.001638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.540205 B =16762.056438 C =17091.263839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.091 4.091 3 H 0.085 0.915 4 C -0.119 4.119 5 C -0.125 4.125 6 C -0.115 4.115 7 C -0.071 4.071 8 H 0.064 0.936 9 C -0.122 4.122 10 C 0.540 3.460 11 O -0.578 6.578 12 N -0.650 5.650 13 C 0.092 3.908 14 C 0.114 3.886 15 N -0.696 5.696 16 C 0.543 3.457 17 O -0.558 6.558 18 C -0.112 4.112 19 S -0.177 6.177 20 C -0.528 4.528 21 H 0.064 0.936 22 C 0.045 3.955 23 N -0.917 5.917 24 Si 0.913 3.087 25 H -0.264 1.264 26 H -0.261 1.261 27 H -0.235 1.235 28 C 0.096 3.904 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.048 0.952 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.046 0.954 37 H 0.057 0.943 38 H 0.114 0.886 39 H 0.108 0.892 40 H 0.116 0.884 41 H 0.095 0.905 42 H 0.112 0.888 43 H 0.423 0.577 44 H 0.115 0.885 45 H 0.119 0.881 46 H 0.276 0.724 47 H 0.076 0.924 48 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.408 -10.954 19.747 32.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.109 4.109 3 H 0.103 0.897 4 C -0.156 4.156 5 C -0.163 4.163 6 C -0.153 4.153 7 C -0.090 4.090 8 H 0.082 0.918 9 C -0.161 4.161 10 C 0.332 3.668 11 O -0.457 6.457 12 N -0.386 5.386 13 C -0.031 4.031 14 C 0.007 3.993 15 N -0.350 5.350 16 C 0.329 3.671 17 O -0.435 6.435 18 C -0.263 4.263 19 S 0.049 5.951 20 C -0.676 4.676 21 H 0.082 0.918 22 C -0.160 4.160 23 N -0.556 5.556 24 Si 0.735 3.265 25 H -0.189 1.189 26 H -0.186 1.186 27 H -0.158 1.158 28 C -0.027 4.027 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.132 0.868 39 H 0.126 0.874 40 H 0.134 0.866 41 H 0.113 0.887 42 H 0.130 0.870 43 H 0.261 0.739 44 H 0.133 0.867 45 H 0.137 0.863 46 H 0.085 0.915 47 H 0.094 0.906 48 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -22.388 -11.882 21.192 33.038 hybrid contribution -0.261 0.325 -1.797 1.845 sum -22.649 -11.557 19.395 31.980 Atomic orbital electron populations 1.21872 0.94533 1.01616 1.02056 1.21799 0.96094 0.99636 0.93375 0.89701 1.22438 1.01279 0.94788 0.97117 1.22565 1.00693 0.97506 0.95502 1.22416 0.98795 0.97839 0.96249 1.21605 0.97158 0.94581 0.95620 0.91797 1.21853 1.02272 0.99871 0.92152 1.20869 0.75543 0.85738 0.84688 1.90696 1.55948 1.20356 1.78709 1.49415 1.50305 1.18153 1.20727 1.23752 0.91672 0.86149 1.01572 1.22671 0.95951 0.92322 0.88388 1.45443 1.13881 1.52135 1.23547 1.19943 0.81888 0.78802 0.86515 1.90712 1.53499 1.60130 1.39200 1.23284 0.99363 1.03216 1.00460 1.84738 1.15095 1.66113 1.29126 1.22477 1.03326 1.36400 1.05356 0.91816 1.25556 1.00266 0.93302 0.96890 1.70019 1.26645 1.32884 1.26006 0.85880 0.80024 0.79006 0.81542 1.18915 1.18585 1.15830 1.23403 0.91888 1.00273 0.87172 0.91734 0.92638 0.93243 0.91193 0.90829 0.91361 0.91755 0.93466 0.92463 0.86811 0.87412 0.86631 0.88713 0.87046 0.73885 0.86673 0.86270 0.91458 0.90589 0.86881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 8.83 71.98 0.64 -0.74 16 2 C -0.09 -0.93 3.16 -10.07 -0.03 -0.96 16 3 H 0.08 0.69 7.67 -2.39 -0.02 0.67 16 4 C -0.12 -1.21 6.36 31.67 0.20 -1.01 16 5 C -0.13 -1.62 6.94 32.01 0.22 -1.40 16 6 C -0.12 -1.94 5.44 31.79 0.17 -1.77 16 7 C -0.07 -1.02 2.20 -10.07 -0.02 -1.04 16 8 H 0.06 1.15 7.45 -2.39 -0.02 1.13 16 9 C -0.12 -1.55 4.66 29.85 0.14 -1.42 16 10 C 0.54 10.60 7.86 87.66 0.69 11.29 16 11 O -0.58 -16.07 15.60 -3.03 -0.05 -16.12 16 12 N -0.65 -10.47 3.69 -857.89 -3.16 -13.64 16 13 C 0.09 1.09 8.24 83.26 0.69 1.78 16 14 C 0.11 1.84 4.63 45.55 0.21 2.05 16 15 N -0.70 -12.14 5.38 -441.56 -2.38 -14.52 16 16 C 0.54 15.77 7.85 87.66 0.69 16.46 16 17 O -0.56 -21.17 15.45 -3.03 -0.05 -21.22 16 18 C -0.11 -3.73 6.16 71.24 0.44 -3.29 16 19 S -0.18 -8.46 18.55 -56.49 -1.05 -9.50 16 20 C -0.53 -29.63 10.04 67.95 0.68 -28.95 16 21 H 0.06 3.76 8.03 -2.91 -0.02 3.74 16 22 C 0.05 2.59 5.50 84.85 0.47 3.05 16 23 N -0.92 -54.78 13.97 21.65 0.30 -54.48 16 24 Si 0.91 43.87 27.74 68.60 1.90 45.78 16 25 H -0.26 -12.46 7.11 99.48 0.71 -11.76 16 26 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 27 H -0.23 -11.15 6.74 99.48 0.67 -10.48 16 28 C 0.10 1.38 8.38 83.17 0.70 2.08 16 29 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.07 0.64 7.84 -2.39 -0.02 0.62 16 34 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.05 1.02 7.66 -2.38 -0.02 1.00 16 37 H 0.06 0.98 7.76 -2.38 -0.02 0.96 16 38 H 0.11 0.97 8.14 -2.38 -0.02 0.95 16 39 H 0.11 1.12 8.00 -2.39 -0.02 1.10 16 40 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.11 2.39 7.45 -2.39 -0.02 2.37 16 43 H 0.42 4.42 8.76 -92.71 -0.81 3.61 16 44 H 0.12 3.49 8.14 -2.40 -0.02 3.47 16 45 H 0.12 3.53 8.14 -2.40 -0.02 3.51 16 46 H 0.28 15.28 8.31 -92.71 -0.77 14.51 16 47 H 0.08 1.28 8.14 -2.39 -0.02 1.27 16 48 H 0.11 1.11 8.13 -2.38 -0.02 1.09 16 Total: -1.00 -76.78 402.33 1.49 -75.29 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: 0.10 Total: 12.28 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: 5.88 Total: -3.87 kcal Atomic # 7 Polarization: -77.40 SS G_CDS: -5.24 Total: -82.64 kcal Atomic # 8 Polarization: -37.25 SS G_CDS: -0.09 Total: -37.34 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.90 Total: 45.78 kcal Atomic # 16 Polarization: -8.46 SS G_CDS: -1.05 Total: -9.50 kcal Total: -76.78 1.49 -75.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001297002573.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.993 kcal (2) G-P(sol) polarization free energy of solvation -76.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds