Wall clock time and date at job start Sat Apr 11 2020 06:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 110.05428 * 2 1 4 4 C 1.54264 * 110.03456 * 238.58146 * 2 1 3 5 5 C 1.54884 * 104.19626 * 217.10305 * 4 2 1 6 6 C 1.54888 * 102.74825 * 37.94683 * 5 4 2 7 7 C 1.53875 * 110.02971 * 121.41442 * 2 1 3 8 8 H 1.08999 * 110.07480 * 238.59202 * 7 2 1 9 9 C 1.52997 * 110.03603 * 0.02562 * 7 2 1 10 10 C 1.50701 * 109.47212 * 183.61795 * 9 7 2 11 11 O 1.21280 * 119.99781 * 0.02562 * 10 9 7 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 7 13 13 C 1.47055 * 136.05788 * 359.63591 * 12 10 9 14 14 C 1.53757 * 87.88929 * 152.95713 * 13 12 10 15 15 N 1.46498 * 114.57644 * 272.66358 * 14 13 12 16 16 C 1.34775 * 119.99854 * 248.66875 * 15 14 13 17 17 O 1.21285 * 120.00097 * 359.97438 * 16 15 14 18 18 C 1.50700 * 119.99787 * 179.97438 * 16 15 14 19 19 S 1.81003 * 109.46949 * 180.02562 * 18 16 15 20 20 C 1.76199 * 99.99854 * 180.02562 * 19 18 16 21 21 H 1.08003 * 120.00442 * 359.97438 * 20 19 18 22 22 C 1.38806 * 119.99965 * 180.02562 * 20 19 18 23 23 N 1.31627 * 119.99905 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99817 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47355 * 59.99538 * 24 22 20 26 26 H 1.48497 * 109.47043 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47140 * 299.99730 * 24 22 20 28 28 C 1.47065 * 136.05284 * 179.97438 * 12 10 9 29 29 H 1.09001 * 109.47124 * 298.58416 * 1 2 3 30 30 H 1.09006 * 109.47417 * 58.58475 * 1 2 3 31 31 H 1.09002 * 109.47242 * 178.58418 * 1 2 3 32 32 H 1.09006 * 110.48568 * 98.42580 * 4 2 1 33 33 H 1.09001 * 110.48836 * 335.78706 * 4 2 1 34 34 H 1.09000 * 110.75793 * 279.62703 * 5 4 2 35 35 H 1.09003 * 110.75420 * 156.25403 * 5 4 2 36 36 H 1.08999 * 110.48584 * 203.37764 * 6 5 4 37 37 H 1.08999 * 110.48997 * 80.73256 * 6 5 4 38 38 H 1.09002 * 109.47153 * 63.61796 * 9 7 2 39 39 H 1.09001 * 109.46832 * 303.61987 * 9 7 2 40 40 H 1.09004 * 113.47070 * 267.68929 * 13 12 10 41 41 H 1.09003 * 113.47263 * 38.13096 * 13 12 10 42 42 H 1.09002 * 114.08791 * 139.77553 * 14 13 12 43 43 H 0.96994 * 119.99735 * 68.66934 * 15 14 13 44 44 H 1.09001 * 109.47351 * 299.99916 * 18 16 15 45 45 H 1.08997 * 109.47260 * 60.00205 * 18 16 15 46 46 H 0.96999 * 119.99618 * 180.02562 * 23 22 20 47 47 H 1.08997 * 113.46988 * 321.86829 * 28 12 10 48 48 H 1.09005 * 113.46467 * 92.25379 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9037 1.0239 0.0000 4 6 2.0585 -0.7555 -1.2368 5 6 3.3137 -1.5007 -0.7190 6 6 2.8874 -1.9406 0.7036 7 6 2.0570 -0.7535 1.2338 8 1 2.6864 -0.0958 1.8332 9 6 0.8861 -1.2674 2.0739 10 6 1.4143 -1.9250 3.3227 11 8 2.6096 -1.9771 3.5214 12 7 0.5583 -2.4543 4.2192 13 6 -0.9015 -2.5817 4.3420 14 6 -0.6632 -3.8397 5.1933 15 7 -0.5347 -5.0802 4.4246 16 6 -1.4940 -6.0236 4.5026 17 8 -2.4634 -5.8458 5.2095 18 6 -1.3622 -7.2994 3.7115 19 16 -2.7985 -8.3552 4.0254 20 6 -2.3931 -9.7343 3.0064 21 1 -1.4774 -9.7319 2.4337 22 6 -3.2510 -10.8233 2.9390 23 7 -4.3672 -10.8260 3.6366 24 14 -2.8208 -12.2857 1.8592 25 1 -1.5325 -12.8712 2.3091 26 1 -3.8919 -13.3091 1.9622 27 1 -2.6958 -11.8395 0.4484 28 6 0.6731 -3.1535 5.5079 29 1 -0.3633 0.4917 0.9024 30 1 -0.3634 0.5357 -0.8770 31 1 -0.3634 -1.0274 -0.0254 32 1 2.3297 -0.0536 -2.0255 33 1 1.3143 -1.4660 -1.5966 34 1 4.1710 -0.8289 -0.6751 35 1 3.5325 -2.3678 -1.3421 36 1 3.7637 -2.1037 1.3310 37 1 2.2771 -2.8425 0.6572 38 1 0.3145 -1.9929 1.4951 39 1 0.2415 -0.4322 2.3478 40 1 -1.3636 -1.7642 4.8956 41 1 -1.4009 -2.7851 3.3947 42 1 -1.3315 -3.9306 6.0496 43 1 0.2407 -5.2225 3.8596 44 1 -1.3101 -7.0641 2.6484 45 1 -0.4542 -7.8217 4.0128 46 1 -4.9666 -11.5873 3.5896 47 1 1.5153 -3.8439 5.5537 48 1 0.6276 -2.4867 6.3690 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001297002575.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:04 Heat of formation + Delta-G solvation = -51.100333 kcal Electronic energy + Delta-G solvation = -27002.325291 eV Core-core repulsion = 23184.066932 eV Total energy + Delta-G solvation = -3818.258359 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.01073 -39.71439 -38.64492 -37.56411 -33.59342 -32.45960 -32.31087 -31.22781 -30.04907 -28.54543 -26.56516 -25.80487 -25.50671 -25.11925 -22.16639 -21.06344 -20.63969 -19.43143 -18.67423 -17.95024 -17.51983 -16.81700 -16.52439 -16.06828 -15.72941 -15.48761 -15.04891 -14.89750 -14.82971 -14.50386 -14.04537 -13.86357 -13.61250 -13.34743 -13.21527 -13.12216 -12.78569 -12.63057 -12.55469 -12.30723 -12.21495 -11.95819 -11.28836 -11.19230 -11.08457 -11.07927 -11.05880 -11.01030 -10.95978 -10.82201 -10.79957 -10.57701 -9.94247 -9.86311 -9.58742 -9.14354 -9.07969 -8.96686 -8.29619 -6.54425 -6.24815 -3.95906 2.38774 2.55222 2.88067 2.90093 3.21809 3.24815 3.27744 3.58627 3.99952 4.17257 4.18219 4.25041 4.31824 4.43769 4.65221 4.85779 4.91671 4.99095 5.00148 5.03909 5.05485 5.08839 5.10549 5.17803 5.21380 5.23698 5.30185 5.34248 5.45124 5.47325 5.50418 5.51578 5.63452 5.66005 5.72449 5.74613 5.81918 5.86587 5.88382 6.07795 6.08273 6.10417 6.18445 6.47558 7.42246 7.55395 7.57187 7.92689 8.31958 8.45881 9.20648 10.82531 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011934 B = 0.002297 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2345.748870 B =12188.898409 C =13605.984891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.094 4.094 3 H 0.072 0.928 4 C -0.121 4.121 5 C -0.128 4.128 6 C -0.113 4.113 7 C -0.072 4.072 8 H 0.078 0.922 9 C -0.130 4.130 10 C 0.540 3.460 11 O -0.538 6.538 12 N -0.650 5.650 13 C 0.082 3.918 14 C 0.113 3.887 15 N -0.718 5.718 16 C 0.537 3.463 17 O -0.513 6.513 18 C -0.154 4.154 19 S -0.058 6.058 20 C -0.537 4.537 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 C 0.093 3.907 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.084 0.916 42 H 0.127 0.873 43 H 0.401 0.599 44 H 0.090 0.910 45 H 0.091 0.909 46 H 0.269 0.731 47 H 0.083 0.917 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.870 23.407 -4.601 26.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.112 4.112 3 H 0.090 0.910 4 C -0.158 4.158 5 C -0.165 4.165 6 C -0.151 4.151 7 C -0.090 4.090 8 H 0.096 0.904 9 C -0.169 4.169 10 C 0.330 3.670 11 O -0.415 6.415 12 N -0.387 5.387 13 C -0.043 4.043 14 C 0.006 3.994 15 N -0.371 5.371 16 C 0.324 3.676 17 O -0.386 6.386 18 C -0.305 4.305 19 S 0.169 5.831 20 C -0.685 4.685 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 C -0.030 4.030 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.114 0.886 39 H 0.112 0.888 40 H 0.115 0.885 41 H 0.102 0.898 42 H 0.145 0.855 43 H 0.236 0.764 44 H 0.109 0.891 45 H 0.109 0.891 46 H 0.079 0.921 47 H 0.102 0.898 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 10.868 23.654 -3.434 26.257 hybrid contribution 1.689 -1.092 -1.753 2.669 sum 12.557 22.562 -5.187 26.337 Atomic orbital electron populations 1.22028 0.95090 1.02053 1.01594 1.21800 0.95720 0.99260 0.94440 0.90997 1.22458 0.97533 0.98929 0.96896 1.22515 0.97564 0.99848 0.96604 1.22390 1.00091 0.97059 0.95532 1.21571 0.95061 0.97329 0.95084 0.90401 1.21939 0.99942 1.01265 0.93774 1.20454 0.85488 0.77021 0.84002 1.90703 1.15161 1.58007 1.77594 1.49800 1.08481 1.58834 1.21589 1.23709 0.81393 0.97594 1.01571 1.22109 0.97608 0.83937 0.95785 1.45624 1.25320 1.17117 1.49036 1.20373 0.81747 0.84013 0.81467 1.90709 1.30126 1.78729 1.39050 1.23538 1.07807 0.96937 1.02193 1.85373 1.21543 1.14464 1.61721 1.22823 1.10138 1.03892 1.31666 0.90955 1.24989 0.94463 0.98196 0.95876 1.70001 1.10343 1.31018 1.38907 0.86222 0.78222 0.80768 0.80291 1.19924 1.20789 1.19920 1.23390 0.98338 0.94376 0.86896 0.92456 0.92789 0.92169 0.91893 0.91440 0.91657 0.91650 0.90838 0.92032 0.88621 0.88760 0.88517 0.89752 0.85495 0.76430 0.89146 0.89067 0.92088 0.89843 0.88460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 7.88 37.16 0.29 -0.61 16 2 C -0.09 -0.64 3.50 -89.50 -0.31 -0.95 16 3 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 4 C -0.12 -0.83 6.36 -25.08 -0.16 -0.99 16 5 C -0.13 -0.98 6.91 -24.74 -0.17 -1.15 16 6 C -0.11 -1.04 5.36 -25.07 -0.13 -1.17 16 7 C -0.07 -0.59 2.56 -89.50 -0.23 -0.82 16 8 H 0.08 0.74 7.97 -51.93 -0.41 0.32 16 9 C -0.13 -1.03 3.70 -27.88 -0.10 -1.13 16 10 C 0.54 5.79 7.85 -10.98 -0.09 5.70 16 11 O -0.54 -7.61 15.52 5.56 0.09 -7.52 16 12 N -0.65 -6.01 3.69 -185.10 -0.68 -6.69 16 13 C 0.08 0.64 8.26 -8.38 -0.07 0.57 16 14 C 0.11 1.09 4.61 -67.69 -0.31 0.78 16 15 N -0.72 -8.67 5.40 -53.50 -0.29 -8.96 16 16 C 0.54 9.18 7.85 -10.99 -0.09 9.09 16 17 O -0.51 -10.60 15.45 5.55 0.09 -10.52 16 18 C -0.15 -2.96 6.16 36.01 0.22 -2.74 16 19 S -0.06 -1.51 20.57 -107.50 -2.21 -3.72 16 20 C -0.54 -15.02 9.50 30.94 0.29 -14.72 16 21 H 0.07 1.91 7.80 -52.48 -0.41 1.51 16 22 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -25.75 13.22 55.49 0.73 -25.02 16 24 Si 0.92 21.14 29.55 -169.99 -5.02 16.12 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 28 C 0.09 0.79 8.37 -8.52 -0.07 0.72 16 29 H 0.06 0.31 6.65 -51.93 -0.35 -0.03 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.38 6.81 -51.93 -0.35 0.02 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.47 7.84 -51.93 -0.41 0.07 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.80 7.60 -51.93 -0.39 0.41 16 37 H 0.06 0.59 7.78 -51.93 -0.40 0.19 16 38 H 0.10 0.72 6.86 -51.93 -0.36 0.36 16 39 H 0.09 0.61 6.51 -51.93 -0.34 0.27 16 40 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.13 1.29 7.45 -51.93 -0.39 0.91 16 43 H 0.40 4.26 8.76 -40.82 -0.36 3.91 16 44 H 0.09 1.61 8.14 -51.91 -0.42 1.19 16 45 H 0.09 1.64 8.14 -51.92 -0.42 1.21 16 46 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 47 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 48 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 399.00 15.07 6.01 6.01 Total: -1.00 -34.58 399.00 -10.26 -44.84 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -7.95 Total: 0.92 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -1.02 Total: -5.45 kcal Atomic # 7 Polarization: -40.43 SS G_CDS: -0.24 Total: -40.67 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: 0.17 Total: -18.04 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.21 Total: -3.72 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.58 -10.26 -44.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001297002575.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.261 kcal (2) G-P(sol) polarization free energy of solvation -34.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds