Wall clock time and date at job start Sat Apr 11 2020 06:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 115.55189 * 2 1 4 4 C 1.53008 * 117.49590 * 145.71110 * 2 1 3 5 5 C 1.53002 * 117.49441 * 214.32964 * 2 1 3 6 6 H 1.08997 * 117.50322 * 0.02562 * 5 2 1 7 7 C 1.50707 * 117.49718 * 145.02323 * 5 2 1 8 8 O 1.21283 * 119.99692 * 359.97438 * 7 5 2 9 9 N 1.34773 * 120.00050 * 179.97438 * 7 5 2 10 10 C 1.46504 * 119.99960 * 174.55200 * 9 7 5 11 11 C 1.52999 * 110.43595 * 303.04594 * 10 9 7 12 12 N 1.46490 * 109.47241 * 307.77354 * 11 10 9 13 13 C 1.34782 * 120.00189 * 174.99496 * 12 11 10 14 14 O 1.21273 * 119.99867 * 359.97438 * 13 12 11 15 15 C 1.50697 * 120.00014 * 179.97438 * 13 12 11 16 16 S 1.81003 * 109.47173 * 179.97438 * 15 13 12 17 17 C 1.76199 * 100.00150 * 179.97438 * 16 15 13 18 18 H 1.08004 * 119.99768 * 0.02562 * 17 16 15 19 19 C 1.38798 * 119.99767 * 179.97438 * 17 16 15 20 20 N 1.31626 * 120.00205 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99734 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47304 * 90.00298 * 21 19 17 23 23 H 1.48503 * 109.47080 * 210.00224 * 21 19 17 24 24 H 1.48506 * 109.47070 * 330.00349 * 21 19 17 25 25 C 1.54890 * 110.48678 * 180.49976 * 10 9 7 26 26 C 1.55235 * 102.59198 * 279.19306 * 25 10 9 27 27 C 1.54269 * 104.22734 * 322.08525 * 26 25 10 28 28 C 1.53872 * 106.60454 * 23.61093 * 27 26 25 29 29 H 1.09000 * 109.46918 * 205.66609 * 1 2 3 30 30 H 1.08998 * 109.46606 * 85.67062 * 1 2 3 31 31 H 1.08999 * 109.46801 * 325.67162 * 1 2 3 32 32 H 1.09002 * 117.49744 * 214.97340 * 4 2 1 33 33 H 1.08996 * 117.49675 * 359.97438 * 4 2 1 34 34 H 0.97004 * 120.00318 * 354.56040 * 9 7 5 35 35 H 1.09001 * 109.46766 * 67.77646 * 11 10 9 36 36 H 1.09004 * 109.46769 * 187.76881 * 11 10 9 37 37 H 0.97001 * 120.00316 * 354.98699 * 12 11 10 38 38 H 1.09008 * 109.47225 * 299.99340 * 15 13 12 39 39 H 1.08994 * 109.47427 * 59.99603 * 15 13 12 40 40 H 0.97002 * 120.00198 * 180.02562 * 20 19 17 41 41 H 1.08997 * 110.75211 * 37.58678 * 25 10 9 42 42 H 1.09004 * 110.75172 * 160.95026 * 25 10 9 43 43 H 1.08998 * 110.46822 * 203.39680 * 26 25 10 44 44 H 1.08996 * 110.58426 * 80.82702 * 26 25 10 45 45 H 1.09003 * 110.03045 * 264.32351 * 27 26 25 46 46 H 1.09004 * 110.07074 * 142.91903 * 27 26 25 47 47 H 1.08997 * 110.03021 * 240.71630 * 28 27 26 48 48 H 1.08991 * 110.03505 * 119.28062 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2364 -1.1214 0.7646 5 6 2.2364 -1.1208 -0.7654 6 1 1.6112 -1.8579 -1.2693 7 6 3.5293 -0.7807 -1.4611 8 8 3.9716 0.3470 -1.4015 9 7 4.1939 -1.7298 -2.1496 10 6 5.3854 -1.3737 -2.9241 11 6 5.0530 -0.2837 -3.9450 12 7 3.8943 -0.6968 -4.7405 13 6 3.3563 0.1520 -5.6387 14 8 3.8312 1.2578 -5.7880 15 6 2.1647 -0.2732 -6.4574 16 16 1.6797 1.0758 -7.5625 17 6 0.3073 0.3271 -8.3752 18 1 0.0124 -0.6801 -8.1202 19 6 -0.3955 1.0322 -9.3424 20 7 -0.0365 2.2598 -9.6529 21 14 -1.8510 0.2387 -10.2035 22 1 -3.0937 0.5288 -9.4442 23 1 -1.9716 0.7867 -11.5784 24 1 -1.6446 -1.2304 -10.2725 25 6 5.9640 -2.6230 -3.6337 26 6 6.7726 -3.3114 -2.5014 27 6 7.4010 -2.1401 -1.7183 28 6 6.5191 -0.9081 -1.9870 29 1 -0.3633 -0.9263 0.4451 30 1 -0.3632 0.0776 -1.0247 31 1 -0.3633 0.8487 0.5795 32 1 3.1716 -0.8758 1.2680 33 1 1.6111 -1.8587 1.2679 34 1 3.8833 -2.6486 -2.1324 35 1 4.8229 0.6450 -3.4229 36 1 5.9085 -0.1286 -4.6024 37 1 3.5143 -1.5812 -4.6209 38 1 2.4245 -1.1517 -7.0481 39 1 1.3349 -0.5144 -5.7932 40 1 -0.5279 2.7527 -10.3286 41 1 5.1629 -3.2712 -3.9888 42 1 6.6194 -2.3320 -4.4547 43 1 7.5496 -3.9497 -2.9218 44 1 6.1119 -3.8905 -1.8564 45 1 8.4159 -1.9569 -2.0713 46 1 7.4119 -2.3661 -0.6520 47 1 7.1060 -0.1271 -2.4703 48 1 6.1013 -0.5368 -1.0513 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001297531921.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:22 Heat of formation + Delta-G solvation = -66.209988 kcal Electronic energy + Delta-G solvation = -27787.117269 eV Core-core repulsion = 23968.203706 eV Total energy + Delta-G solvation = -3818.913563 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.90391 -39.12106 -38.38313 -36.66663 -34.40308 -33.39636 -32.40944 -30.37173 -29.16538 -29.01420 -28.26790 -25.51094 -24.70644 -24.14976 -21.46749 -21.08907 -20.27480 -20.12753 -19.58499 -17.85841 -17.71156 -16.73458 -16.29863 -15.68278 -15.32082 -15.28597 -15.12657 -14.86230 -14.78868 -14.19407 -14.04838 -13.83639 -13.48385 -13.46181 -13.08891 -12.99945 -12.84083 -12.59261 -12.31948 -11.99437 -11.82416 -11.74567 -11.63537 -11.56363 -11.44946 -11.09167 -11.04782 -11.00571 -10.80605 -10.74624 -10.60736 -10.31492 -9.81799 -9.79821 -9.38099 -9.22211 -9.05069 -8.74217 -8.19742 -6.46872 -6.19483 -3.89679 2.33930 2.81695 3.10011 3.19762 3.23213 3.29197 3.34158 3.55730 3.76747 4.08585 4.22251 4.23256 4.39714 4.44815 4.50045 4.53724 4.83656 4.91668 5.07383 5.09817 5.13625 5.15379 5.17210 5.22786 5.34036 5.35769 5.41109 5.43802 5.54944 5.57648 5.60780 5.64566 5.65952 5.71163 5.78952 5.88360 5.89952 5.91827 5.99709 6.07657 6.10434 6.15698 6.36648 6.70742 7.30131 7.61015 7.78590 8.09293 8.36931 8.70925 9.25497 10.87927 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010976 B = 0.002920 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.348877 B = 9585.268606 C =11186.203850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.117 4.117 3 H 0.118 0.882 4 C -0.151 4.151 5 C -0.193 4.193 6 H 0.122 0.878 7 C 0.548 3.452 8 O -0.526 6.526 9 N -0.718 5.718 10 C 0.165 3.835 11 C 0.115 3.885 12 N -0.732 5.732 13 C 0.531 3.469 14 O -0.516 6.516 15 C -0.151 4.151 16 S -0.059 6.059 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.918 3.082 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C -0.126 4.126 26 C -0.123 4.123 27 C -0.123 4.123 28 C -0.123 4.123 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.400 0.600 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.393 0.607 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.268 0.732 41 H 0.075 0.925 42 H 0.089 0.911 43 H 0.068 0.932 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.062 0.938 47 H 0.076 0.924 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.849 -15.233 21.578 28.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.136 4.136 3 H 0.136 0.864 4 C -0.188 4.188 5 C -0.214 4.214 6 H 0.140 0.860 7 C 0.335 3.665 8 O -0.402 6.402 9 N -0.370 5.370 10 C 0.078 3.922 11 C -0.010 4.010 12 N -0.387 5.387 13 C 0.316 3.684 14 O -0.390 6.390 15 C -0.302 4.302 16 S 0.168 5.832 17 C -0.684 4.684 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.197 1.197 25 C -0.164 4.164 26 C -0.161 4.161 27 C -0.161 4.161 28 C -0.162 4.162 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.115 0.885 33 H 0.121 0.879 34 H 0.234 0.766 35 H 0.106 0.894 36 H 0.088 0.912 37 H 0.226 0.774 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.107 0.893 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.081 0.919 47 H 0.094 0.906 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 10.945 -12.373 21.236 26.905 hybrid contribution -1.821 -2.775 -0.408 3.344 sum 9.124 -15.148 20.828 27.323 Atomic orbital electron populations 1.21418 0.92087 1.02083 1.02682 1.22375 0.95405 0.95049 1.00772 0.86435 1.23088 1.03094 1.01888 0.90756 1.22330 0.97816 1.05741 0.95540 0.85958 1.19611 0.84284 0.84688 0.77957 1.90706 1.68001 1.21069 1.60393 1.45912 1.28853 1.11530 1.50703 1.21396 0.85189 0.94924 0.90655 1.21680 0.89094 0.98255 0.91942 1.45835 1.33311 1.18219 1.41301 1.20266 0.84139 0.84637 0.79320 1.90704 1.61710 1.20492 1.66080 1.23510 0.97773 1.06670 1.02257 1.85434 1.38577 1.15782 1.43427 1.22868 1.16607 1.03172 1.25734 0.91010 1.24988 0.97700 0.94834 0.96067 1.70020 1.39522 1.09794 1.30911 0.86176 0.81478 0.79251 0.78630 1.20286 1.20755 1.19722 1.22905 0.99932 0.95338 0.98199 1.22423 0.99336 0.97495 0.96826 1.22134 0.99174 0.94630 1.00145 1.22432 0.95517 0.97950 1.00331 0.92467 0.91537 0.91601 0.88468 0.87924 0.76594 0.89357 0.91171 0.77392 0.89413 0.89516 0.92196 0.90649 0.89289 0.91288 0.91624 0.91598 0.91930 0.90552 0.90337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.04 10.19 37.16 0.38 -0.66 16 2 C -0.12 -1.12 5.92 -90.61 -0.54 -1.66 16 3 H 0.12 1.37 7.67 -51.93 -0.40 0.97 16 4 C -0.15 -1.12 9.88 -26.72 -0.26 -1.38 16 5 C -0.19 -1.72 5.91 -91.77 -0.54 -2.26 16 6 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 7 C 0.55 6.08 6.85 -10.98 -0.08 6.01 16 8 O -0.53 -7.99 13.22 5.56 0.07 -7.92 16 9 N -0.72 -5.92 4.54 -46.07 -0.21 -6.13 16 10 C 0.16 1.50 0.39 -130.15 -0.05 1.45 16 11 C 0.12 1.54 4.14 -4.05 -0.02 1.52 16 12 N -0.73 -10.40 5.26 -60.30 -0.32 -10.72 16 13 C 0.53 10.47 7.85 -10.98 -0.09 10.38 16 14 O -0.52 -12.48 15.86 5.56 0.09 -12.40 16 15 C -0.15 -3.15 6.16 36.00 0.22 -2.93 16 16 S -0.06 -1.63 20.57 -107.50 -2.21 -3.85 16 17 C -0.54 -15.44 9.50 30.94 0.29 -15.14 16 18 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 19 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 20 N -0.87 -26.46 13.22 55.49 0.73 -25.73 16 21 Si 0.92 21.53 29.55 -169.99 -5.02 16.51 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 C -0.13 -0.85 5.67 -24.55 -0.14 -0.99 16 26 C -0.12 -0.70 6.80 -24.88 -0.17 -0.87 16 27 C -0.12 -0.84 6.80 -25.61 -0.17 -1.01 16 28 C -0.12 -1.13 5.68 -25.61 -0.15 -1.27 16 29 H 0.06 0.38 7.90 -51.93 -0.41 -0.03 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.10 0.57 8.05 -51.93 -0.42 0.15 16 34 H 0.40 2.18 8.50 -40.82 -0.35 1.83 16 35 H 0.09 1.50 6.48 -51.93 -0.34 1.16 16 36 H 0.07 0.94 8.02 -51.93 -0.42 0.53 16 37 H 0.39 4.37 8.07 -40.82 -0.33 4.04 16 38 H 0.09 1.67 8.14 -51.91 -0.42 1.24 16 39 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 40 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 41 H 0.07 0.43 8.10 -51.93 -0.42 0.01 16 42 H 0.09 0.65 7.97 -51.93 -0.41 0.23 16 43 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.08 0.74 7.84 -51.93 -0.41 0.33 16 48 H 0.08 0.86 6.63 -51.93 -0.34 0.51 16 LS Contribution 403.53 15.07 6.08 6.08 Total: -1.00 -36.67 403.53 -10.20 -46.87 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -8.01 Total: 4.09 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: -1.40 Total: -6.81 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: 0.21 Total: -42.58 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: 0.16 Total: -20.32 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -36.67 -10.20 -46.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001297531921.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.341 kcal (2) G-P(sol) polarization free energy of solvation -36.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds