Wall clock time and date at job start Sat Apr 11 2020 06:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 115.55189 * 2 1 4 4 C 1.53008 * 117.49590 * 145.71110 * 2 1 3 5 5 C 1.53002 * 117.49441 * 214.32964 * 2 1 3 6 6 H 1.08997 * 117.50322 * 0.02562 * 5 2 1 7 7 C 1.50707 * 117.49718 * 145.02323 * 5 2 1 8 8 O 1.21283 * 119.99692 * 359.97438 * 7 5 2 9 9 N 1.34773 * 120.00050 * 179.97438 * 7 5 2 10 10 C 1.46504 * 119.99960 * 174.55200 * 9 7 5 11 11 C 1.52999 * 110.43595 * 303.04594 * 10 9 7 12 12 N 1.46490 * 109.47241 * 307.77354 * 11 10 9 13 13 C 1.34782 * 120.00189 * 174.99496 * 12 11 10 14 14 O 1.21273 * 119.99867 * 359.97438 * 13 12 11 15 15 C 1.50697 * 120.00014 * 179.97438 * 13 12 11 16 16 S 1.81003 * 109.47173 * 179.97438 * 15 13 12 17 17 C 1.76199 * 100.00150 * 179.97438 * 16 15 13 18 18 H 1.08004 * 119.99768 * 0.02562 * 17 16 15 19 19 C 1.38798 * 119.99767 * 179.97438 * 17 16 15 20 20 N 1.31626 * 120.00205 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99734 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47304 * 90.00298 * 21 19 17 23 23 H 1.48503 * 109.47080 * 210.00224 * 21 19 17 24 24 H 1.48506 * 109.47070 * 330.00349 * 21 19 17 25 25 C 1.54890 * 110.48678 * 180.49976 * 10 9 7 26 26 C 1.55235 * 102.59198 * 279.19306 * 25 10 9 27 27 C 1.54269 * 104.22734 * 322.08525 * 26 25 10 28 28 C 1.53872 * 106.60454 * 23.61093 * 27 26 25 29 29 H 1.09000 * 109.46918 * 205.66609 * 1 2 3 30 30 H 1.08998 * 109.46606 * 85.67062 * 1 2 3 31 31 H 1.08999 * 109.46801 * 325.67162 * 1 2 3 32 32 H 1.09002 * 117.49744 * 214.97340 * 4 2 1 33 33 H 1.08996 * 117.49675 * 359.97438 * 4 2 1 34 34 H 0.97004 * 120.00318 * 354.56040 * 9 7 5 35 35 H 1.09001 * 109.46766 * 67.77646 * 11 10 9 36 36 H 1.09004 * 109.46769 * 187.76881 * 11 10 9 37 37 H 0.97001 * 120.00316 * 354.98699 * 12 11 10 38 38 H 1.09008 * 109.47225 * 299.99340 * 15 13 12 39 39 H 1.08994 * 109.47427 * 59.99603 * 15 13 12 40 40 H 0.97002 * 120.00198 * 180.02562 * 20 19 17 41 41 H 1.08997 * 110.75211 * 37.58678 * 25 10 9 42 42 H 1.09004 * 110.75172 * 160.95026 * 25 10 9 43 43 H 1.08998 * 110.46822 * 203.39680 * 26 25 10 44 44 H 1.08996 * 110.58426 * 80.82702 * 26 25 10 45 45 H 1.09003 * 110.03045 * 264.32351 * 27 26 25 46 46 H 1.09004 * 110.07074 * 142.91903 * 27 26 25 47 47 H 1.08997 * 110.03021 * 240.71630 * 28 27 26 48 48 H 1.08991 * 110.03505 * 119.28062 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2364 -1.1214 0.7646 5 6 2.2364 -1.1208 -0.7654 6 1 1.6112 -1.8579 -1.2693 7 6 3.5293 -0.7807 -1.4611 8 8 3.9716 0.3470 -1.4015 9 7 4.1939 -1.7298 -2.1496 10 6 5.3854 -1.3737 -2.9241 11 6 5.0530 -0.2837 -3.9450 12 7 3.8943 -0.6968 -4.7405 13 6 3.3563 0.1520 -5.6387 14 8 3.8312 1.2578 -5.7880 15 6 2.1647 -0.2732 -6.4574 16 16 1.6797 1.0758 -7.5625 17 6 0.3073 0.3271 -8.3752 18 1 0.0124 -0.6801 -8.1202 19 6 -0.3955 1.0322 -9.3424 20 7 -0.0365 2.2598 -9.6529 21 14 -1.8510 0.2387 -10.2035 22 1 -3.0937 0.5288 -9.4442 23 1 -1.9716 0.7867 -11.5784 24 1 -1.6446 -1.2304 -10.2725 25 6 5.9640 -2.6230 -3.6337 26 6 6.7726 -3.3114 -2.5014 27 6 7.4010 -2.1401 -1.7183 28 6 6.5191 -0.9081 -1.9870 29 1 -0.3633 -0.9263 0.4451 30 1 -0.3632 0.0776 -1.0247 31 1 -0.3633 0.8487 0.5795 32 1 3.1716 -0.8758 1.2680 33 1 1.6111 -1.8587 1.2679 34 1 3.8833 -2.6486 -2.1324 35 1 4.8229 0.6450 -3.4229 36 1 5.9085 -0.1286 -4.6024 37 1 3.5143 -1.5812 -4.6209 38 1 2.4245 -1.1517 -7.0481 39 1 1.3349 -0.5144 -5.7932 40 1 -0.5279 2.7527 -10.3286 41 1 5.1629 -3.2712 -3.9888 42 1 6.6194 -2.3320 -4.4547 43 1 7.5496 -3.9497 -2.9218 44 1 6.1119 -3.8905 -1.8564 45 1 8.4159 -1.9569 -2.0713 46 1 7.4119 -2.3661 -0.6520 47 1 7.1060 -0.1271 -2.4703 48 1 6.1013 -0.5368 -1.0513 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001297531921.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:21 Heat of formation + Delta-G solvation = -91.874852 kcal Electronic energy + Delta-G solvation = -27788.230181 eV Core-core repulsion = 23968.203706 eV Total energy + Delta-G solvation = -3820.026475 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.79708 -40.45829 -39.33563 -37.45630 -35.63661 -34.58918 -34.34541 -31.71382 -29.99953 -29.74539 -29.22661 -27.68004 -25.71506 -24.92540 -22.26351 -21.92966 -21.32824 -20.98689 -20.50741 -19.80085 -18.48618 -17.95780 -17.70057 -16.88539 -16.80428 -16.56382 -16.09308 -15.98861 -15.85005 -15.70001 -15.19287 -14.80665 -14.56236 -14.46242 -14.32023 -14.12191 -14.01642 -13.69666 -13.36961 -13.17203 -12.95493 -12.88892 -12.81996 -12.58036 -12.47707 -12.33028 -12.16179 -12.02455 -11.85630 -11.73502 -11.34556 -11.32221 -11.14538 -11.02753 -11.00599 -10.71928 -10.28166 -10.13839 -10.09018 -8.68337 -8.34581 -6.13609 1.25492 1.42892 1.46371 1.49623 1.56839 1.59082 2.04156 2.26558 2.29966 2.84723 2.99556 3.30949 3.37362 3.52869 3.71644 3.76040 3.78055 3.88846 3.97108 4.17801 4.22458 4.27942 4.37445 4.40707 4.45721 4.51395 4.54331 4.60356 4.72050 4.74187 4.83571 4.84247 4.87568 4.91184 5.04114 5.05968 5.09674 5.20443 5.24631 5.27708 5.34584 5.38698 5.41226 5.48063 5.59981 6.19532 6.45740 6.58982 7.06205 7.21911 7.30126 8.74804 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010976 B = 0.002920 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.348877 B = 9585.268606 C =11186.203850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.142 4.142 3 H 0.083 0.917 4 C -0.124 4.124 5 C -0.195 4.195 6 H 0.148 0.852 7 C 0.540 3.460 8 O -0.576 6.576 9 N -0.700 5.700 10 C 0.171 3.829 11 C 0.118 3.882 12 N -0.702 5.702 13 C 0.530 3.470 14 O -0.569 6.569 15 C -0.125 4.125 16 S -0.155 6.155 17 C -0.545 4.545 18 H 0.085 0.915 19 C 0.012 3.988 20 N -0.913 5.913 21 Si 1.001 2.999 22 H -0.268 1.268 23 H -0.278 1.278 24 H -0.255 1.255 25 C -0.121 4.121 26 C -0.115 4.115 27 C -0.119 4.119 28 C -0.124 4.124 29 H 0.080 0.920 30 H 0.051 0.949 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.133 0.867 34 H 0.419 0.581 35 H 0.048 0.952 36 H 0.068 0.932 37 H 0.413 0.587 38 H 0.114 0.886 39 H 0.107 0.893 40 H 0.271 0.729 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.080 0.920 45 H 0.070 0.930 46 H 0.067 0.933 47 H 0.062 0.938 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.932 -19.966 22.378 31.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.161 4.161 3 H 0.102 0.898 4 C -0.161 4.161 5 C -0.216 4.216 6 H 0.165 0.835 7 C 0.328 3.672 8 O -0.455 6.455 9 N -0.353 5.353 10 C 0.084 3.916 11 C -0.008 4.008 12 N -0.355 5.355 13 C 0.316 3.684 14 O -0.448 6.448 15 C -0.276 4.276 16 S 0.072 5.928 17 C -0.693 4.693 18 H 0.103 0.897 19 C -0.193 4.193 20 N -0.549 5.549 21 Si 0.822 3.178 22 H -0.193 1.193 23 H -0.204 1.204 24 H -0.179 1.179 25 C -0.159 4.159 26 C -0.152 4.152 27 C -0.156 4.156 28 C -0.163 4.163 29 H 0.099 0.901 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.109 0.891 33 H 0.151 0.849 34 H 0.257 0.743 35 H 0.066 0.934 36 H 0.086 0.914 37 H 0.250 0.750 38 H 0.132 0.868 39 H 0.125 0.875 40 H 0.080 0.920 41 H 0.115 0.885 42 H 0.104 0.896 43 H 0.101 0.899 44 H 0.099 0.901 45 H 0.089 0.911 46 H 0.086 0.914 47 H 0.081 0.919 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.034 -17.208 22.072 29.732 hybrid contribution -1.424 -1.266 -0.547 1.982 sum 8.610 -18.475 21.525 29.644 Atomic orbital electron populations 1.21381 0.90966 1.03348 1.02012 1.22336 0.96294 0.94273 1.03182 0.89826 1.23154 1.02660 1.00670 0.89656 1.22422 0.96742 1.05771 0.96672 0.83459 1.20132 0.84997 0.84287 0.77823 1.90705 1.69361 1.23301 1.62173 1.45763 1.28091 1.12089 1.49402 1.21316 0.85470 0.94944 0.89866 1.21704 0.88169 0.98522 0.92360 1.45507 1.32724 1.18111 1.39208 1.20176 0.83893 0.84429 0.79915 1.90694 1.63240 1.22889 1.67942 1.23327 0.98764 1.04153 1.01331 1.85689 1.39791 1.21125 1.46208 1.23201 1.16488 1.03655 1.25933 0.89716 1.26169 1.01034 0.95301 0.96766 1.70196 1.41261 1.11700 1.31759 0.84922 0.76959 0.78819 0.77076 1.19315 1.20374 1.17904 1.22928 1.00580 0.94002 0.98342 1.22408 0.99691 0.96913 0.96209 1.22112 0.98886 0.93787 1.00842 1.22397 0.95819 0.99008 0.99042 0.90123 0.92946 0.91625 0.89089 0.84891 0.74303 0.93381 0.91402 0.74999 0.86794 0.87490 0.92013 0.88517 0.89563 0.89861 0.90117 0.91115 0.91401 0.91948 0.92492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.88 10.19 71.98 0.73 -1.14 16 2 C -0.14 -2.70 5.92 -10.79 -0.06 -2.77 16 3 H 0.08 2.15 7.67 -2.39 -0.02 2.13 16 4 C -0.12 -1.60 9.88 30.60 0.30 -1.30 16 5 C -0.20 -3.17 5.91 -11.54 -0.07 -3.24 16 6 H 0.15 1.64 8.14 -2.39 -0.02 1.62 16 7 C 0.54 11.80 6.85 87.66 0.60 12.40 16 8 O -0.58 -18.61 13.22 -3.04 -0.04 -18.65 16 9 N -0.70 -10.23 4.54 -418.05 -1.90 -12.13 16 10 C 0.17 2.92 0.39 4.68 0.00 2.92 16 11 C 0.12 3.18 4.14 86.38 0.36 3.54 16 12 N -0.70 -19.28 5.26 -463.08 -2.43 -21.71 16 13 C 0.53 21.02 7.85 87.66 0.69 21.71 16 14 O -0.57 -28.81 15.86 -3.01 -0.05 -28.86 16 15 C -0.12 -5.08 6.16 71.23 0.44 -4.64 16 16 S -0.16 -8.86 20.57 -56.49 -1.16 -10.02 16 17 C -0.55 -31.38 9.50 67.95 0.65 -30.73 16 18 H 0.08 4.48 7.80 -2.91 -0.02 4.46 16 19 C 0.01 0.68 5.49 84.86 0.47 1.15 16 20 N -0.91 -56.87 13.22 21.65 0.29 -56.59 16 21 Si 1.00 43.65 29.55 68.60 2.03 45.68 16 22 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 23 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 24 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 25 C -0.12 -1.25 5.67 32.01 0.18 -1.07 16 26 C -0.11 -0.88 6.80 31.79 0.22 -0.66 16 27 C -0.12 -1.37 6.80 31.32 0.21 -1.16 16 28 C -0.12 -2.26 5.68 31.32 0.18 -2.08 16 29 H 0.08 0.86 7.90 -2.39 -0.02 0.85 16 30 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.13 0.94 8.05 -2.39 -0.02 0.92 16 34 H 0.42 2.98 8.50 -92.71 -0.79 2.19 16 35 H 0.05 1.75 6.48 -2.39 -0.02 1.74 16 36 H 0.07 1.88 8.02 -2.38 -0.02 1.86 16 37 H 0.41 8.00 8.07 -92.71 -0.75 7.25 16 38 H 0.11 4.06 8.14 -2.39 -0.02 4.04 16 39 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 40 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 41 H 0.10 0.63 8.10 -2.39 -0.02 0.61 16 42 H 0.09 1.01 7.97 -2.38 -0.02 0.99 16 43 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 44 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 45 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.06 1.29 7.84 -2.39 -0.02 1.27 16 48 H 0.06 1.30 6.63 -2.39 -0.02 1.28 16 Total: -1.00 -86.14 403.53 1.05 -85.09 By element: Atomic # 1 Polarization: 24.83 SS G_CDS: -0.57 Total: 24.27 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: 4.89 Total: -7.06 kcal Atomic # 7 Polarization: -86.39 SS G_CDS: -4.05 Total: -90.43 kcal Atomic # 8 Polarization: -47.43 SS G_CDS: -0.09 Total: -47.51 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: -8.86 SS G_CDS: -1.16 Total: -10.02 kcal Total: -86.14 1.05 -85.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001297531921.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.785 kcal (2) G-P(sol) polarization free energy of solvation -86.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds