Wall clock time and date at job start Sat Apr 11 2020 06:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.50001 * 2 1 4 4 C 1.53040 * 109.52471 * 120.08468 * 2 1 3 5 5 C 1.53041 * 109.53903 * 181.32819 * 4 2 1 6 6 C 1.53622 * 109.24305 * 298.51425 * 5 4 2 7 7 N 1.46921 * 108.54484 * 54.85423 * 6 5 4 8 8 C 1.34778 * 120.63382 * 126.36822 * 7 6 5 9 9 O 1.21279 * 120.00501 * 173.79261 * 8 7 6 10 10 C 1.50700 * 119.99783 * 353.78951 * 8 7 6 11 11 C 1.52998 * 109.47344 * 180.02562 * 10 8 7 12 12 F 1.39902 * 109.46765 * 299.99861 * 11 10 8 13 13 F 1.39892 * 109.47073 * 59.99914 * 11 10 8 14 14 C 1.53004 * 109.47321 * 180.02562 * 11 10 8 15 15 F 1.39898 * 109.47095 * 180.02562 * 14 11 10 16 16 F 1.39896 * 109.46834 * 300.00089 * 14 11 10 17 17 C 1.46927 * 118.73664 * 306.09474 * 7 6 5 18 18 H 1.08993 * 109.58975 * 294.06793 * 17 7 6 19 19 C 1.53005 * 109.58679 * 173.64674 * 17 7 6 20 20 N 1.46503 * 109.46980 * 301.82191 * 19 17 7 21 21 C 1.36944 * 119.99791 * 185.35511 * 20 19 17 22 22 H 1.07997 * 120.00052 * 0.02562 * 21 20 19 23 23 C 1.38810 * 119.99715 * 180.02562 * 21 20 19 24 24 N 1.31619 * 120.00150 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99759 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47328 * 59.99555 * 25 23 21 27 27 H 1.48505 * 109.47126 * 179.97438 * 25 23 21 28 28 H 1.48495 * 109.46965 * 299.99376 * 25 23 21 29 29 H 1.09004 * 109.47609 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.47192 * 300.06296 * 1 2 3 31 31 H 1.08996 * 109.47512 * 60.05721 * 1 2 3 32 32 H 1.08993 * 109.46313 * 301.35002 * 4 2 1 33 33 H 1.09008 * 109.46035 * 61.32482 * 4 2 1 34 34 H 1.09000 * 109.49500 * 58.59030 * 5 4 2 35 35 H 1.08997 * 109.49943 * 178.64919 * 5 4 2 36 36 H 1.08999 * 109.73895 * 295.11284 * 6 5 4 37 37 H 1.09000 * 109.66460 * 174.54681 * 6 5 4 38 38 H 1.09010 * 109.47254 * 59.99851 * 10 8 7 39 39 H 1.09002 * 109.47273 * 300.00140 * 10 8 7 40 40 H 1.08997 * 109.47139 * 59.99600 * 14 11 10 41 41 H 1.09000 * 109.47005 * 61.81711 * 19 17 7 42 42 H 1.08998 * 109.47107 * 181.82271 * 19 17 7 43 43 H 0.96996 * 120.00221 * 5.36177 * 20 19 17 44 44 H 0.96999 * 119.99758 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7230 1.2481 5 6 3.5715 -0.6944 1.2653 6 6 4.1056 -1.4307 0.0273 7 7 3.5046 -0.8281 -1.1703 8 6 4.2806 -0.3849 -2.1792 9 8 3.7722 0.0066 -3.2084 10 6 5.7800 -0.3756 -2.0284 11 6 6.4178 0.1707 -3.3073 12 9 6.0630 -0.6420 -4.3893 13 9 5.9640 1.4743 -3.5346 14 6 7.9402 0.1796 -3.1544 15 9 8.5234 0.6797 -4.3236 16 9 8.2954 0.9919 -2.0722 17 6 2.0412 -0.7234 -1.2498 18 1 1.6055 -1.7213 -1.2983 19 6 1.6509 0.0709 -2.4979 20 7 2.2675 1.3988 -2.4442 21 6 1.9715 2.3304 -3.4033 22 1 1.2831 2.0864 -4.1989 23 6 2.5562 3.5884 -3.3527 24 7 3.3947 3.8859 -2.3828 25 14 2.1518 4.8594 -4.6605 26 1 0.6938 5.1405 -4.6436 27 1 2.9001 6.1116 -4.3819 28 1 2.5398 4.3369 -5.9952 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5149 0.8895 31 1 -0.3634 0.5129 -0.8904 32 1 1.6589 -0.2248 2.1388 33 1 1.6980 -1.7575 1.2349 34 1 3.9161 0.3396 1.2535 35 1 3.9345 -1.1885 2.1665 36 1 3.8349 -2.4852 0.0809 37 1 5.1901 -1.3316 -0.0188 38 1 6.1336 -1.3913 -1.8508 39 1 6.0565 0.2579 -1.1856 40 1 8.2935 -0.8363 -2.9775 41 1 1.9984 -0.4553 -3.3869 42 1 0.5666 0.1752 -2.5378 43 1 2.8856 1.6180 -1.7295 44 1 3.8030 4.7651 -2.3473 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319859504.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:39 Heat of formation + Delta-G solvation = -185.440292 kcal Electronic energy + Delta-G solvation = -33370.047291 eV Core-core repulsion = 28437.893597 eV Total energy + Delta-G solvation = -4932.153693 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.151 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.62195 -48.32481 -47.29650 -46.59178 -40.26848 -37.24622 -34.79938 -33.26130 -32.41696 -31.95706 -30.00428 -28.08010 -26.53915 -25.85636 -23.89150 -22.52899 -22.24581 -21.08960 -20.05069 -18.76926 -18.30436 -17.94794 -17.50069 -16.99335 -16.49887 -16.17289 -16.03944 -15.19089 -14.97194 -14.53940 -14.26206 -14.25782 -14.13284 -14.06950 -13.69331 -13.60509 -13.32401 -13.28242 -13.07600 -12.93032 -12.78650 -12.73402 -12.64241 -12.09190 -12.02420 -11.86182 -11.70343 -11.53225 -11.39678 -11.02297 -10.65335 -10.63578 -10.60677 -10.58046 -10.36616 -10.03974 -9.77115 -9.43014 -8.76110 -8.34991 -8.08779 -6.47454 -5.48277 -2.68741 2.72071 3.16893 3.32758 3.60675 3.64842 3.66716 3.69238 3.83039 4.05027 4.09849 4.70699 4.74895 4.83934 4.84454 4.93977 4.98782 5.05993 5.20094 5.29848 5.40297 5.47528 5.54348 5.66571 5.79683 5.80082 5.87297 5.88955 5.94409 6.01890 6.08280 6.25938 6.35983 6.49772 6.55743 6.68797 6.85857 7.01678 7.28170 7.84502 7.95485 8.70036 8.80865 9.81928 10.40208 10.74896 11.75475 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.008467 B = 0.006733 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3306.137340 B = 4157.553075 C = 6477.047203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.103 4.103 3 H 0.089 0.911 4 C -0.112 4.112 5 C -0.137 4.137 6 C 0.111 3.889 7 N -0.615 5.615 8 C 0.493 3.507 9 O -0.434 6.434 10 C -0.188 4.188 11 C 0.270 3.730 12 F -0.175 7.175 13 F -0.146 7.146 14 C 0.234 3.766 15 F -0.185 7.185 16 F -0.181 7.181 17 C 0.151 3.849 18 H 0.064 0.936 19 C 0.152 3.848 20 N -0.701 5.701 21 C -0.210 4.210 22 H 0.062 0.938 23 C -0.015 4.015 24 N -0.935 5.935 25 Si 0.898 3.102 26 H -0.291 1.291 27 H -0.294 1.294 28 H -0.290 1.290 29 H 0.046 0.954 30 H 0.051 0.949 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.114 0.886 39 H 0.125 0.875 40 H 0.137 0.863 41 H 0.046 0.954 42 H 0.017 0.983 43 H 0.379 0.621 44 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.535 -15.806 8.731 19.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.122 4.122 3 H 0.107 0.893 4 C -0.150 4.150 5 C -0.175 4.175 6 C -0.012 4.012 7 N -0.352 5.352 8 C 0.277 3.723 9 O -0.301 6.301 10 C -0.229 4.229 11 C 0.232 3.768 12 F -0.155 7.155 13 F -0.126 7.126 14 C 0.179 3.821 15 F -0.166 7.166 16 F -0.162 7.162 17 C 0.048 3.952 18 H 0.082 0.918 19 C 0.025 3.975 20 N -0.346 5.346 21 C -0.342 4.342 22 H 0.080 0.920 23 C -0.210 4.210 24 N -0.585 5.585 25 Si 0.730 3.270 26 H -0.218 1.218 27 H -0.221 1.221 28 H -0.217 1.217 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.133 0.867 39 H 0.143 0.857 40 H 0.154 0.846 41 H 0.063 0.937 42 H 0.034 0.966 43 H 0.213 0.787 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 6.186 -15.442 7.913 18.422 hybrid contribution 0.218 1.028 -0.419 1.131 sum 6.404 -14.415 7.494 17.463 Atomic orbital electron populations 1.21755 0.94765 1.00881 1.02434 1.21505 0.95899 1.01332 0.93467 0.89293 1.21577 0.94879 1.00277 0.98252 1.22007 0.96672 1.01729 0.97118 1.21718 0.97759 0.96627 0.85135 1.47796 1.06425 1.63036 1.17977 1.19563 0.87022 0.80488 0.85270 1.91050 1.72104 1.40090 1.26901 1.22801 0.97751 1.04672 0.97634 1.21473 0.91035 0.77899 0.86419 1.93086 1.92703 1.72496 1.57248 1.93320 1.89703 1.34618 1.94985 1.22870 0.91500 0.94181 0.73567 1.93063 1.85303 1.89680 1.48532 1.93060 1.92506 1.76137 1.54506 1.21542 0.78427 0.98277 0.96926 0.91807 1.21044 0.94640 0.88100 0.93753 1.42203 1.53141 1.08182 1.31025 1.19040 1.19838 0.91709 1.03584 0.91968 1.24536 1.00247 0.97689 0.98555 1.69610 1.34250 1.21103 1.33556 0.86388 0.77104 0.81480 0.81987 1.21841 1.22059 1.21690 0.93486 0.93028 0.91389 0.92046 0.92399 0.91020 0.91333 0.91838 0.90491 0.86745 0.85710 0.84617 0.93689 0.96552 0.78684 0.94115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 8.97 37.15 0.33 -1.63 16 2 C -0.10 -1.55 2.24 -90.50 -0.20 -1.75 16 3 H 0.09 1.71 6.93 -51.93 -0.36 1.35 16 4 C -0.11 -1.29 5.17 -26.69 -0.14 -1.43 16 5 C -0.14 -1.44 6.10 -26.39 -0.16 -1.60 16 6 C 0.11 1.16 6.38 -3.49 -0.02 1.14 16 7 N -0.61 -9.31 2.84 -164.96 -0.47 -9.78 16 8 C 0.49 8.87 6.30 -10.98 -0.07 8.80 16 9 O -0.43 -10.09 9.20 5.56 0.05 -10.04 16 10 C -0.19 -2.56 3.53 -27.88 -0.10 -2.65 16 11 C 0.27 4.43 1.40 -26.73 -0.04 4.39 16 12 F -0.17 -3.08 16.12 2.25 0.04 -3.04 16 13 F -0.15 -3.36 16.11 2.25 0.04 -3.33 16 14 C 0.23 2.89 4.83 37.16 0.18 3.07 16 15 F -0.18 -2.75 17.30 2.25 0.04 -2.72 16 16 F -0.18 -2.43 16.80 2.25 0.04 -2.39 16 17 C 0.15 2.45 2.62 -67.60 -0.18 2.28 16 18 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 19 C 0.15 3.23 4.82 -4.04 -0.02 3.21 16 20 N -0.70 -18.13 2.90 -59.90 -0.17 -18.31 16 21 C -0.21 -6.20 9.83 -15.06 -0.15 -6.35 16 22 H 0.06 1.84 7.83 -52.49 -0.41 1.43 16 23 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 24 N -0.93 -29.36 13.06 55.49 0.72 -28.63 16 25 Si 0.90 24.27 29.55 -169.99 -5.02 19.25 16 26 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16 27 H -0.29 -7.99 7.11 56.52 0.40 -7.59 16 28 H -0.29 -7.89 7.11 56.52 0.40 -7.49 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 31 H 0.07 1.10 6.58 -51.93 -0.34 0.76 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.64 5.93 -51.93 -0.31 0.33 16 38 H 0.11 0.98 7.69 -51.92 -0.40 0.58 16 39 H 0.12 1.58 7.60 -51.93 -0.39 1.19 16 40 H 0.14 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.05 1.06 6.22 -51.93 -0.32 0.74 16 42 H 0.02 0.36 6.55 -51.93 -0.34 0.02 16 43 H 0.38 10.27 5.76 -40.82 -0.24 10.03 16 44 H 0.25 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 355.56 15.07 5.36 5.36 Total: -1.00 -36.66 355.56 -6.09 -42.75 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -6.05 Total: 3.96 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: -0.66 Total: 6.92 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: 0.08 Total: -56.72 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.05 Total: -10.04 kcal Atomic # 9 Polarization: -11.63 SS G_CDS: 0.15 Total: -11.48 kcal Atomic # 14 Polarization: 24.27 SS G_CDS: -5.02 Total: 19.25 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -36.66 -6.09 -42.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319859504.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.690 kcal (2) G-P(sol) polarization free energy of solvation -36.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds