Wall clock time and date at job start Sat Apr 11 2020 06:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.50001 * 2 1 4 4 C 1.53040 * 109.52471 * 120.08468 * 2 1 3 5 5 C 1.53041 * 109.53903 * 181.32819 * 4 2 1 6 6 C 1.53622 * 109.24305 * 298.51425 * 5 4 2 7 7 N 1.46921 * 108.54484 * 54.85423 * 6 5 4 8 8 C 1.34778 * 120.63382 * 126.36822 * 7 6 5 9 9 O 1.21279 * 120.00501 * 173.79261 * 8 7 6 10 10 C 1.50700 * 119.99783 * 353.78951 * 8 7 6 11 11 C 1.52998 * 109.47344 * 180.02562 * 10 8 7 12 12 F 1.39902 * 109.46765 * 299.99861 * 11 10 8 13 13 F 1.39892 * 109.47073 * 59.99914 * 11 10 8 14 14 C 1.53004 * 109.47321 * 180.02562 * 11 10 8 15 15 F 1.39898 * 109.47095 * 180.02562 * 14 11 10 16 16 F 1.39896 * 109.46834 * 300.00089 * 14 11 10 17 17 C 1.46927 * 118.73664 * 306.09474 * 7 6 5 18 18 H 1.08993 * 109.58975 * 294.06793 * 17 7 6 19 19 C 1.53005 * 109.58679 * 173.64674 * 17 7 6 20 20 N 1.46503 * 109.46980 * 301.82191 * 19 17 7 21 21 C 1.36944 * 119.99791 * 185.35511 * 20 19 17 22 22 H 1.07997 * 120.00052 * 0.02562 * 21 20 19 23 23 C 1.38810 * 119.99715 * 180.02562 * 21 20 19 24 24 N 1.31619 * 120.00150 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99759 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47328 * 59.99555 * 25 23 21 27 27 H 1.48505 * 109.47126 * 179.97438 * 25 23 21 28 28 H 1.48495 * 109.46965 * 299.99376 * 25 23 21 29 29 H 1.09004 * 109.47609 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.47192 * 300.06296 * 1 2 3 31 31 H 1.08996 * 109.47512 * 60.05721 * 1 2 3 32 32 H 1.08993 * 109.46313 * 301.35002 * 4 2 1 33 33 H 1.09008 * 109.46035 * 61.32482 * 4 2 1 34 34 H 1.09000 * 109.49500 * 58.59030 * 5 4 2 35 35 H 1.08997 * 109.49943 * 178.64919 * 5 4 2 36 36 H 1.08999 * 109.73895 * 295.11284 * 6 5 4 37 37 H 1.09000 * 109.66460 * 174.54681 * 6 5 4 38 38 H 1.09010 * 109.47254 * 59.99851 * 10 8 7 39 39 H 1.09002 * 109.47273 * 300.00140 * 10 8 7 40 40 H 1.08997 * 109.47139 * 59.99600 * 14 11 10 41 41 H 1.09000 * 109.47005 * 61.81711 * 19 17 7 42 42 H 1.08998 * 109.47107 * 181.82271 * 19 17 7 43 43 H 0.96996 * 120.00221 * 5.36177 * 20 19 17 44 44 H 0.96999 * 119.99758 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7230 1.2481 5 6 3.5715 -0.6944 1.2653 6 6 4.1056 -1.4307 0.0273 7 7 3.5046 -0.8281 -1.1703 8 6 4.2806 -0.3849 -2.1792 9 8 3.7722 0.0066 -3.2084 10 6 5.7800 -0.3756 -2.0284 11 6 6.4178 0.1707 -3.3073 12 9 6.0630 -0.6420 -4.3893 13 9 5.9640 1.4743 -3.5346 14 6 7.9402 0.1796 -3.1544 15 9 8.5234 0.6797 -4.3236 16 9 8.2954 0.9919 -2.0722 17 6 2.0412 -0.7234 -1.2498 18 1 1.6055 -1.7213 -1.2983 19 6 1.6509 0.0709 -2.4979 20 7 2.2675 1.3988 -2.4442 21 6 1.9715 2.3304 -3.4033 22 1 1.2831 2.0864 -4.1989 23 6 2.5562 3.5884 -3.3527 24 7 3.3947 3.8859 -2.3828 25 14 2.1518 4.8594 -4.6605 26 1 0.6938 5.1405 -4.6436 27 1 2.9001 6.1116 -4.3819 28 1 2.5398 4.3369 -5.9952 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5149 0.8895 31 1 -0.3634 0.5129 -0.8904 32 1 1.6589 -0.2248 2.1388 33 1 1.6980 -1.7575 1.2349 34 1 3.9161 0.3396 1.2535 35 1 3.9345 -1.1885 2.1665 36 1 3.8349 -2.4852 0.0809 37 1 5.1901 -1.3316 -0.0188 38 1 6.1336 -1.3913 -1.8508 39 1 6.0565 0.2579 -1.1856 40 1 8.2935 -0.8363 -2.9775 41 1 1.9984 -0.4553 -3.3869 42 1 0.5666 0.1752 -2.5378 43 1 2.8856 1.6180 -1.7295 44 1 3.8030 4.7651 -2.3473 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319859504.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:37 Heat of formation + Delta-G solvation = -210.230193 kcal Electronic energy + Delta-G solvation = -33371.122261 eV Core-core repulsion = 28437.893597 eV Total energy + Delta-G solvation = -4933.228664 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.151 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -50.77229 -49.54486 -48.43125 -47.95916 -41.55221 -38.50020 -36.44940 -34.75342 -33.73490 -33.34214 -31.74498 -29.35707 -27.85297 -27.01329 -25.60120 -24.19077 -23.37597 -22.25034 -21.28893 -20.00236 -19.42086 -19.23538 -19.03999 -18.53395 -17.67274 -17.46397 -17.29904 -16.74234 -16.22600 -16.18566 -15.70669 -15.53016 -15.42716 -15.13079 -14.99741 -14.79612 -14.74729 -14.63771 -14.61951 -14.40380 -14.16949 -13.97732 -13.83404 -13.44725 -13.26684 -13.11110 -13.03771 -12.94156 -12.79523 -12.68344 -12.44754 -12.16796 -11.99552 -11.77322 -11.70360 -11.59767 -11.41591 -11.08496 -10.86747 -9.88772 -9.39546 -8.59044 -7.81947 -4.98752 1.38438 1.43460 1.47669 1.63388 1.90399 2.18031 2.61257 2.68087 2.84636 2.96813 3.08329 3.51568 3.66167 3.77841 3.82669 3.91572 3.96216 4.03151 4.15609 4.26453 4.29430 4.39595 4.46905 4.48879 4.66394 4.69492 4.85955 4.90509 4.95132 5.00717 5.05781 5.17903 5.25247 5.34600 5.46498 5.50145 5.53599 5.65596 5.85321 6.39553 6.63626 7.46770 7.52805 8.28754 8.52130 9.41547 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.008467 B = 0.006733 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3306.137340 B = 4157.553075 C = 6477.047203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.097 4.097 3 H 0.037 0.963 4 C -0.106 4.106 5 C -0.135 4.135 6 C 0.103 3.897 7 N -0.612 5.612 8 C 0.482 3.518 9 O -0.504 6.504 10 C -0.179 4.179 11 C 0.246 3.754 12 F -0.187 7.187 13 F -0.198 7.198 14 C 0.242 3.758 15 F -0.203 7.203 16 F -0.187 7.187 17 C 0.156 3.844 18 H 0.094 0.906 19 C 0.153 3.847 20 N -0.700 5.700 21 C -0.210 4.210 22 H 0.053 0.947 23 C -0.074 4.074 24 N -0.961 5.961 25 Si 0.953 3.047 26 H -0.278 1.278 27 H -0.295 1.295 28 H -0.295 1.295 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.034 0.966 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.042 0.958 35 H 0.106 0.894 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.178 0.822 39 H 0.136 0.864 40 H 0.210 0.790 41 H 0.022 0.978 42 H 0.012 0.988 43 H 0.371 0.629 44 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.553 -19.041 11.123 23.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.117 4.117 3 H 0.056 0.944 4 C -0.143 4.143 5 C -0.173 4.173 6 C -0.019 4.019 7 N -0.349 5.349 8 C 0.268 3.732 9 O -0.377 6.377 10 C -0.219 4.219 11 C 0.208 3.792 12 F -0.168 7.168 13 F -0.179 7.179 14 C 0.188 3.812 15 F -0.184 7.184 16 F -0.168 7.168 17 C 0.053 3.947 18 H 0.112 0.888 19 C 0.027 3.973 20 N -0.342 5.342 21 C -0.344 4.344 22 H 0.071 0.929 23 C -0.266 4.266 24 N -0.613 5.613 25 Si 0.785 3.215 26 H -0.205 1.205 27 H -0.221 1.221 28 H -0.223 1.223 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.053 0.947 32 H 0.085 0.915 33 H 0.104 0.896 34 H 0.061 0.939 35 H 0.124 0.876 36 H 0.115 0.885 37 H 0.123 0.877 38 H 0.196 0.804 39 H 0.154 0.846 40 H 0.227 0.773 41 H 0.040 0.960 42 H 0.029 0.971 43 H 0.204 0.796 44 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 7.187 -18.727 10.353 22.573 hybrid contribution -0.151 1.915 -1.154 2.241 sum 7.037 -16.811 9.199 20.415 Atomic orbital electron populations 1.21719 0.94143 1.02372 1.01222 1.21404 0.96444 0.98824 0.95031 0.94407 1.21551 0.95676 1.01152 0.95955 1.22015 0.95855 1.00577 0.98854 1.22173 0.99279 0.97833 0.82568 1.47975 1.05792 1.62163 1.18940 1.20421 0.89102 0.78938 0.84774 1.91029 1.73694 1.43292 1.29667 1.22882 0.94318 1.08330 0.96326 1.22374 0.94210 0.75586 0.87048 1.93045 1.93173 1.72456 1.58124 1.93202 1.90781 1.38505 1.95397 1.23365 0.88313 0.96956 0.72541 1.93024 1.85245 1.90252 1.49917 1.93048 1.92200 1.76919 1.54681 1.21424 0.79917 0.98687 0.94702 0.88784 1.21036 0.93716 0.86610 0.95961 1.42163 1.52987 1.09309 1.29778 1.19316 1.18748 0.92602 1.03689 0.92870 1.25172 1.01131 0.99546 1.00762 1.69756 1.35602 1.20907 1.35081 0.85492 0.77409 0.79217 0.79420 1.20482 1.22134 1.22250 0.90539 0.92140 0.94725 0.91464 0.89631 0.93940 0.87555 0.88478 0.87718 0.80444 0.84612 0.77332 0.96030 0.97084 0.79629 0.94961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.70 8.97 71.98 0.65 -3.05 16 2 C -0.10 -2.85 2.24 -10.72 -0.02 -2.88 16 3 H 0.04 1.50 6.93 -2.39 -0.02 1.48 16 4 C -0.11 -2.06 5.17 30.62 0.16 -1.90 16 5 C -0.13 -2.31 6.10 30.82 0.19 -2.12 16 6 C 0.10 1.65 6.38 86.51 0.55 2.20 16 7 N -0.61 -17.35 2.84 -794.21 -2.26 -19.61 16 8 C 0.48 17.08 6.30 87.66 0.55 17.63 16 9 O -0.50 -24.36 9.20 -3.03 -0.03 -24.39 16 10 C -0.18 -4.43 3.53 29.85 0.11 -4.32 16 11 C 0.25 7.90 1.40 30.60 0.04 7.94 16 12 F -0.19 -6.60 16.12 44.97 0.73 -5.88 16 13 F -0.20 -9.59 16.11 44.97 0.72 -8.86 16 14 C 0.24 5.38 4.83 71.98 0.35 5.73 16 15 F -0.20 -5.88 17.30 44.97 0.78 -5.10 16 16 F -0.19 -4.65 16.80 44.97 0.76 -3.89 16 17 C 0.16 4.92 2.62 44.98 0.12 5.03 16 18 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 19 C 0.15 6.80 4.82 86.38 0.42 7.21 16 20 N -0.70 -38.15 2.90 -343.44 -1.00 -39.15 16 21 C -0.21 -13.09 9.83 84.03 0.83 -12.27 16 22 H 0.05 3.32 7.83 -2.91 -0.02 3.29 16 23 C -0.07 -4.71 5.50 84.86 0.47 -4.25 16 24 N -0.96 -63.09 13.06 21.65 0.28 -62.81 16 25 Si 0.95 51.96 29.55 68.60 2.03 53.98 16 26 H -0.28 -14.42 7.11 99.48 0.71 -13.72 16 27 H -0.30 -15.98 7.11 99.48 0.71 -15.28 16 28 H -0.29 -16.16 7.11 99.48 0.71 -15.45 16 29 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 30 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 31 H 0.03 1.14 6.58 -2.39 -0.02 1.13 16 32 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 34 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.10 1.13 5.93 -2.39 -0.01 1.11 16 38 H 0.18 2.00 7.69 -2.38 -0.02 1.98 16 39 H 0.14 3.10 7.60 -2.39 -0.02 3.08 16 40 H 0.21 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.02 1.09 6.22 -2.39 -0.01 1.07 16 42 H 0.01 0.51 6.55 -2.39 -0.02 0.50 16 43 H 0.37 21.20 5.76 -92.71 -0.53 20.66 16 44 H 0.24 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -90.28 355.56 6.91 -83.37 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: 0.50 Total: 17.36 kcal Atomic # 6 Polarization: 10.58 SS G_CDS: 4.39 Total: 14.98 kcal Atomic # 7 Polarization: -118.59 SS G_CDS: -2.97 Total: -121.56 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.03 Total: -24.39 kcal Atomic # 9 Polarization: -26.72 SS G_CDS: 2.98 Total: -23.74 kcal Atomic # 14 Polarization: 51.96 SS G_CDS: 2.03 Total: 53.98 kcal Total: -90.28 6.91 -83.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319859504.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.860 kcal (2) G-P(sol) polarization free energy of solvation -90.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds