Wall clock time and date at job start Sat Apr 11 2020 06:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.52919 * 2 1 4 4 C 1.53036 * 109.49967 * 239.91650 * 2 1 3 5 5 C 1.53045 * 109.53960 * 178.69045 * 4 2 1 6 6 C 1.52758 * 109.38495 * 61.23504 * 5 4 2 7 7 N 1.46921 * 109.01100 * 305.59033 * 6 5 4 8 8 C 1.34776 * 120.63439 * 233.58231 * 7 6 5 9 9 O 1.21272 * 120.00221 * 174.04179 * 8 7 6 10 10 C 1.50703 * 119.99446 * 353.76478 * 8 7 6 11 11 C 1.53004 * 109.46528 * 180.27058 * 10 8 7 12 12 F 1.39896 * 109.47838 * 300.00219 * 11 10 8 13 13 F 1.39899 * 109.46815 * 60.00620 * 11 10 8 14 14 C 1.53007 * 109.46887 * 180.02562 * 11 10 8 15 15 F 1.39897 * 109.47083 * 60.00063 * 14 11 10 16 16 F 1.39893 * 109.47204 * 180.02562 * 14 11 10 17 17 C 1.46936 * 118.73587 * 53.31248 * 7 6 5 18 18 H 1.08992 * 109.58744 * 66.56962 * 17 7 6 19 19 C 1.52998 * 109.58318 * 186.85354 * 17 7 6 20 20 N 1.46494 * 109.47297 * 292.93717 * 19 17 7 21 21 C 1.36935 * 119.99949 * 185.82267 * 20 19 17 22 22 H 1.08002 * 120.00551 * 0.02562 * 21 20 19 23 23 C 1.38816 * 119.99994 * 179.97438 * 21 20 19 24 24 N 1.31612 * 119.99987 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 120.00097 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46749 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.46788 * 120.00169 * 25 23 21 28 28 H 1.48498 * 109.47279 * 240.00093 * 25 23 21 29 29 H 1.09000 * 109.47315 * 299.92194 * 1 2 3 30 30 H 1.09003 * 109.46217 * 59.92081 * 1 2 3 31 31 H 1.08993 * 109.47044 * 179.91854 * 1 2 3 32 32 H 1.09005 * 109.45885 * 298.70397 * 4 2 1 33 33 H 1.08994 * 109.46434 * 58.66464 * 4 2 1 34 34 H 1.08995 * 109.49546 * 181.31706 * 5 4 2 35 35 H 1.09000 * 109.49072 * 301.37657 * 5 4 2 36 36 H 1.09004 * 109.50650 * 185.70487 * 6 5 4 37 37 H 1.08997 * 109.42985 * 65.42906 * 6 5 4 38 38 H 1.08998 * 109.47388 * 300.27152 * 10 8 7 39 39 H 1.09001 * 109.46835 * 60.27557 * 10 8 7 40 40 H 1.09001 * 109.46943 * 300.00905 * 14 11 10 41 41 H 1.09003 * 109.47231 * 52.93934 * 19 17 7 42 42 H 1.08998 * 109.47084 * 172.93380 * 19 17 7 43 43 H 0.96997 * 120.00041 * 5.82762 * 20 19 17 44 44 H 0.97008 * 120.00100 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0408 -0.7231 -1.2483 5 6 3.5709 -0.6952 -1.2658 6 6 4.1055 -1.4217 -0.0329 7 7 3.5046 -0.8291 1.1697 8 6 4.2810 -0.3856 2.1781 9 8 3.7816 0.1985 3.1163 10 6 5.7691 -0.6210 2.1428 11 6 6.4091 -0.0284 3.3998 12 9 6.1555 1.3466 3.4485 13 9 5.8665 -0.6431 4.5334 14 6 7.9201 -0.2668 3.3637 15 9 8.4622 0.3482 2.2302 16 9 8.5052 0.2745 4.5133 17 6 2.0412 -0.7238 1.2497 18 1 1.6053 -1.7215 1.3006 19 6 1.6516 0.0705 2.4979 20 7 2.0067 -0.6958 3.6949 21 6 1.6444 -0.2378 4.9335 22 1 1.0964 0.6881 5.0280 23 6 1.9804 -0.9642 6.0677 24 7 2.6476 -2.0927 5.9527 25 14 1.4867 -0.3391 7.7575 26 1 0.7504 0.9427 7.6153 27 1 0.6129 -1.3406 8.4198 28 1 2.7038 -0.1228 8.5803 29 1 -0.3634 0.5126 0.8907 30 1 -0.3632 0.5151 -0.8893 31 1 -0.3633 -1.0276 -0.0015 32 1 1.6967 -1.7573 -1.2351 33 1 1.6583 -0.2246 -2.1388 34 1 3.9335 -1.1899 -2.1668 35 1 3.9160 0.3387 -1.2545 36 1 5.1895 -1.3161 0.0102 37 1 3.8412 -2.4775 -0.0912 38 1 5.9667 -1.6923 2.1050 39 1 6.1918 -0.1421 1.2595 40 1 8.1180 -1.3380 3.3256 41 1 2.1840 1.0216 2.5042 42 1 0.5775 0.2555 2.4903 43 1 2.4986 -1.5275 3.6102 44 1 2.8828 -2.6002 6.7453 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319859506.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:42 Heat of formation + Delta-G solvation = -182.420835 kcal Electronic energy + Delta-G solvation = -33017.976803 eV Core-core repulsion = 28085.954044 eV Total energy + Delta-G solvation = -4932.022760 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.151 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -49.67851 -48.30605 -47.36981 -46.62937 -40.25448 -37.31179 -34.81953 -33.44399 -32.39299 -32.07488 -30.19303 -28.03621 -26.58594 -25.91489 -23.96898 -22.48266 -22.24893 -20.94979 -20.24218 -19.04147 -18.30371 -18.08226 -17.52432 -16.95237 -16.52436 -16.12783 -16.06718 -15.17695 -15.06265 -14.70713 -14.57127 -14.29591 -14.13404 -13.97260 -13.66661 -13.62124 -13.38677 -13.26213 -13.07842 -12.97607 -12.91283 -12.71297 -12.57924 -12.36893 -12.05468 -11.98335 -11.89514 -11.65950 -11.41937 -10.98743 -10.85413 -10.67915 -10.66321 -10.63153 -10.55846 -10.12296 -9.75770 -9.46831 -8.69026 -8.41087 -8.07986 -6.44167 -5.51036 -2.69726 2.70808 3.22847 3.30092 3.58864 3.64234 3.65813 3.69303 3.82300 3.98954 4.14198 4.63310 4.73638 4.75666 4.77772 4.87704 4.89173 5.01920 5.06936 5.26105 5.32913 5.41614 5.49052 5.56620 5.69281 5.72342 5.76490 5.82662 5.88014 5.89151 6.00050 6.09044 6.15446 6.31740 6.43978 6.60067 6.66260 6.94614 7.27073 7.86902 7.93045 8.66538 8.85034 9.78650 10.36752 10.70918 11.72629 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.007368 B = 0.007084 C = 0.003887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3799.459032 B = 3951.803403 C = 7201.297346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.099 4.099 3 H 0.073 0.927 4 C -0.112 4.112 5 C -0.135 4.135 6 C 0.111 3.889 7 N -0.616 5.616 8 C 0.466 3.534 9 O -0.415 6.415 10 C -0.186 4.186 11 C 0.272 3.728 12 F -0.174 7.174 13 F -0.148 7.148 14 C 0.232 3.768 15 F -0.187 7.187 16 F -0.184 7.184 17 C 0.150 3.850 18 H 0.069 0.931 19 C 0.159 3.841 20 N -0.690 5.690 21 C -0.209 4.209 22 H 0.064 0.936 23 C -0.017 4.017 24 N -0.933 5.933 25 Si 0.898 3.102 26 H -0.283 1.283 27 H -0.296 1.296 28 H -0.295 1.295 29 H 0.065 0.935 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.141 0.859 41 H 0.037 0.963 42 H 0.021 0.979 43 H 0.379 0.621 44 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.006 -0.239 -17.908 19.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.119 4.119 3 H 0.091 0.909 4 C -0.150 4.150 5 C -0.173 4.173 6 C -0.013 4.013 7 N -0.354 5.354 8 C 0.249 3.751 9 O -0.280 6.280 10 C -0.227 4.227 11 C 0.233 3.767 12 F -0.155 7.155 13 F -0.128 7.128 14 C 0.177 3.823 15 F -0.168 7.168 16 F -0.165 7.165 17 C 0.047 3.953 18 H 0.087 0.913 19 C 0.032 3.968 20 N -0.334 5.334 21 C -0.341 4.341 22 H 0.082 0.918 23 C -0.211 4.211 24 N -0.583 5.583 25 Si 0.731 3.269 26 H -0.209 1.209 27 H -0.224 1.224 28 H -0.222 1.222 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.158 0.842 41 H 0.054 0.946 42 H 0.038 0.962 43 H 0.213 0.787 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 7.659 0.281 -17.145 18.780 hybrid contribution 0.193 0.055 0.953 0.974 sum 7.853 0.336 -16.191 17.998 Atomic orbital electron populations 1.21837 0.94494 1.02055 1.01991 1.21480 0.96013 1.00026 0.94416 0.90893 1.21564 0.94959 1.00838 0.97639 1.21848 0.96557 1.01341 0.97576 1.21514 0.97713 0.97194 0.84859 1.47701 1.06175 1.63731 1.17823 1.19644 0.86881 0.85059 0.83544 1.91257 1.70912 1.34617 1.31249 1.22789 0.98103 1.04669 0.97120 1.21460 0.90697 0.77421 0.87074 1.93103 1.94978 1.30590 1.96809 1.93294 1.86253 1.81738 1.51537 1.22952 0.89396 0.97442 0.72485 1.93023 1.86928 1.85803 1.51024 1.93064 1.85290 1.88355 1.49767 1.21511 0.78624 0.99456 0.95712 0.91349 1.20944 0.95872 0.95244 0.84778 1.42285 1.65553 1.24903 1.00613 1.19150 1.27096 1.03851 0.84051 0.91784 1.24566 1.01754 0.97690 0.97136 1.69647 1.45349 1.15904 1.27418 0.86214 0.77411 0.77605 0.85652 1.20888 1.22393 1.22214 0.91596 0.92929 0.92613 0.91852 0.91998 0.91109 0.91623 0.90501 0.91790 0.86434 0.86466 0.84237 0.94559 0.96196 0.78721 0.94195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 8.97 37.16 0.33 -1.38 16 2 C -0.10 -1.25 2.34 -90.50 -0.21 -1.46 16 3 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 4 C -0.11 -1.09 5.17 -26.69 -0.14 -1.23 16 5 C -0.13 -1.19 6.06 -26.83 -0.16 -1.35 16 6 C 0.11 1.13 6.29 -3.94 -0.02 1.10 16 7 N -0.62 -9.23 2.98 -165.48 -0.49 -9.73 16 8 C 0.47 8.35 6.73 -10.98 -0.07 8.28 16 9 O -0.42 -9.76 8.49 5.56 0.05 -9.71 16 10 C -0.19 -2.48 3.60 -27.88 -0.10 -2.58 16 11 C 0.27 4.43 1.40 -26.73 -0.04 4.39 16 12 F -0.17 -3.37 16.10 2.25 0.04 -3.33 16 13 F -0.15 -3.17 16.13 2.25 0.04 -3.13 16 14 C 0.23 2.82 4.83 37.16 0.18 3.00 16 15 F -0.19 -2.17 16.80 2.25 0.04 -2.13 16 16 F -0.18 -2.73 17.30 2.25 0.04 -2.69 16 17 C 0.15 2.43 2.42 -67.59 -0.16 2.27 16 18 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 19 C 0.16 3.38 4.76 -4.05 -0.02 3.36 16 20 N -0.69 -18.19 3.15 -59.91 -0.19 -18.38 16 21 C -0.21 -6.23 9.69 -15.06 -0.15 -6.37 16 22 H 0.06 1.90 7.83 -52.49 -0.41 1.49 16 23 C -0.02 -0.51 5.50 -17.43 -0.10 -0.60 16 24 N -0.93 -29.32 13.06 55.49 0.72 -28.60 16 25 Si 0.90 24.12 29.55 -169.99 -5.02 19.09 16 26 H -0.28 -7.42 7.11 56.52 0.40 -7.02 16 27 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 28 H -0.29 -8.04 7.11 56.52 0.40 -7.64 16 29 H 0.07 0.87 6.47 -51.93 -0.34 0.53 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.62 5.97 -51.93 -0.31 0.31 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.12 1.22 8.13 -51.93 -0.42 0.79 16 39 H 0.12 1.18 7.11 -51.93 -0.37 0.81 16 40 H 0.14 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.04 0.86 6.50 -51.93 -0.34 0.52 16 42 H 0.02 0.43 6.34 -51.93 -0.33 0.10 16 43 H 0.38 10.56 6.82 -40.82 -0.28 10.28 16 44 H 0.25 7.61 8.31 -40.82 -0.34 7.28 16 LS Contribution 357.52 15.07 5.39 5.39 Total: -1.00 -36.59 357.52 -6.21 -42.80 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -6.16 Total: 2.98 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: -0.66 Total: 7.44 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: 0.04 Total: -56.71 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.05 Total: -9.71 kcal Atomic # 9 Polarization: -11.43 SS G_CDS: 0.15 Total: -11.28 kcal Atomic # 14 Polarization: 24.12 SS G_CDS: -5.02 Total: 19.09 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -36.59 -6.21 -42.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319859506.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.616 kcal (2) G-P(sol) polarization free energy of solvation -36.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds