Wall clock time and date at job start Sat Apr 11 2020 06:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.52919 * 2 1 4 4 C 1.53036 * 109.49967 * 239.91650 * 2 1 3 5 5 C 1.53045 * 109.53960 * 178.69045 * 4 2 1 6 6 C 1.52758 * 109.38495 * 61.23504 * 5 4 2 7 7 N 1.46921 * 109.01100 * 305.59033 * 6 5 4 8 8 C 1.34776 * 120.63439 * 233.58231 * 7 6 5 9 9 O 1.21272 * 120.00221 * 174.04179 * 8 7 6 10 10 C 1.50703 * 119.99446 * 353.76478 * 8 7 6 11 11 C 1.53004 * 109.46528 * 180.27058 * 10 8 7 12 12 F 1.39896 * 109.47838 * 300.00219 * 11 10 8 13 13 F 1.39899 * 109.46815 * 60.00620 * 11 10 8 14 14 C 1.53007 * 109.46887 * 180.02562 * 11 10 8 15 15 F 1.39897 * 109.47083 * 60.00063 * 14 11 10 16 16 F 1.39893 * 109.47204 * 180.02562 * 14 11 10 17 17 C 1.46936 * 118.73587 * 53.31248 * 7 6 5 18 18 H 1.08992 * 109.58744 * 66.56962 * 17 7 6 19 19 C 1.52998 * 109.58318 * 186.85354 * 17 7 6 20 20 N 1.46494 * 109.47297 * 292.93717 * 19 17 7 21 21 C 1.36935 * 119.99949 * 185.82267 * 20 19 17 22 22 H 1.08002 * 120.00551 * 0.02562 * 21 20 19 23 23 C 1.38816 * 119.99994 * 179.97438 * 21 20 19 24 24 N 1.31612 * 119.99987 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 120.00097 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46749 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.46788 * 120.00169 * 25 23 21 28 28 H 1.48498 * 109.47279 * 240.00093 * 25 23 21 29 29 H 1.09000 * 109.47315 * 299.92194 * 1 2 3 30 30 H 1.09003 * 109.46217 * 59.92081 * 1 2 3 31 31 H 1.08993 * 109.47044 * 179.91854 * 1 2 3 32 32 H 1.09005 * 109.45885 * 298.70397 * 4 2 1 33 33 H 1.08994 * 109.46434 * 58.66464 * 4 2 1 34 34 H 1.08995 * 109.49546 * 181.31706 * 5 4 2 35 35 H 1.09000 * 109.49072 * 301.37657 * 5 4 2 36 36 H 1.09004 * 109.50650 * 185.70487 * 6 5 4 37 37 H 1.08997 * 109.42985 * 65.42906 * 6 5 4 38 38 H 1.08998 * 109.47388 * 300.27152 * 10 8 7 39 39 H 1.09001 * 109.46835 * 60.27557 * 10 8 7 40 40 H 1.09001 * 109.46943 * 300.00905 * 14 11 10 41 41 H 1.09003 * 109.47231 * 52.93934 * 19 17 7 42 42 H 1.08998 * 109.47084 * 172.93380 * 19 17 7 43 43 H 0.96997 * 120.00041 * 5.82762 * 20 19 17 44 44 H 0.97008 * 120.00100 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0408 -0.7231 -1.2483 5 6 3.5709 -0.6952 -1.2658 6 6 4.1055 -1.4217 -0.0329 7 7 3.5046 -0.8291 1.1697 8 6 4.2810 -0.3856 2.1781 9 8 3.7816 0.1985 3.1163 10 6 5.7691 -0.6210 2.1428 11 6 6.4091 -0.0284 3.3998 12 9 6.1555 1.3466 3.4485 13 9 5.8665 -0.6431 4.5334 14 6 7.9201 -0.2668 3.3637 15 9 8.4622 0.3482 2.2302 16 9 8.5052 0.2745 4.5133 17 6 2.0412 -0.7238 1.2497 18 1 1.6053 -1.7215 1.3006 19 6 1.6516 0.0705 2.4979 20 7 2.0067 -0.6958 3.6949 21 6 1.6444 -0.2378 4.9335 22 1 1.0964 0.6881 5.0280 23 6 1.9804 -0.9642 6.0677 24 7 2.6476 -2.0927 5.9527 25 14 1.4867 -0.3391 7.7575 26 1 0.7504 0.9427 7.6153 27 1 0.6129 -1.3406 8.4198 28 1 2.7038 -0.1228 8.5803 29 1 -0.3634 0.5126 0.8907 30 1 -0.3632 0.5151 -0.8893 31 1 -0.3633 -1.0276 -0.0015 32 1 1.6967 -1.7573 -1.2351 33 1 1.6583 -0.2246 -2.1388 34 1 3.9335 -1.1899 -2.1668 35 1 3.9160 0.3387 -1.2545 36 1 5.1895 -1.3161 0.0102 37 1 3.8412 -2.4775 -0.0912 38 1 5.9667 -1.6923 2.1050 39 1 6.1918 -0.1421 1.2595 40 1 8.1180 -1.3380 3.3256 41 1 2.1840 1.0216 2.5042 42 1 0.5775 0.2555 2.4903 43 1 2.4986 -1.5275 3.6102 44 1 2.8828 -2.6002 6.7453 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319859506.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:41 Heat of formation + Delta-G solvation = -206.898369 kcal Electronic energy + Delta-G solvation = -33019.038229 eV Core-core repulsion = 28085.954044 eV Total energy + Delta-G solvation = -4933.084185 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.151 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -50.80577 -49.54635 -48.46950 -47.98085 -41.52393 -38.51147 -36.49483 -34.85234 -33.74205 -33.35802 -31.90908 -29.28931 -27.83976 -27.05134 -25.62398 -24.06728 -23.35707 -22.22064 -21.30231 -20.27314 -19.42860 -19.39183 -18.91605 -18.52225 -17.69479 -17.40152 -17.33872 -16.71228 -16.39582 -16.21668 -15.61538 -15.50259 -15.44305 -15.15394 -15.07181 -14.91261 -14.72028 -14.64545 -14.54628 -14.43518 -14.07781 -13.84401 -13.82037 -13.72909 -13.33169 -13.16205 -13.09719 -12.95152 -12.81781 -12.72865 -12.49053 -12.08116 -11.89337 -11.84506 -11.78650 -11.59515 -11.46182 -11.07616 -10.83998 -9.90225 -9.42582 -8.53905 -7.81826 -4.98001 1.40288 1.43757 1.51463 1.61967 1.94322 2.14782 2.61300 2.67518 2.77292 2.99600 3.05141 3.51831 3.63741 3.75686 3.80085 3.81262 3.92828 4.00521 4.18152 4.25620 4.36847 4.39029 4.42091 4.45860 4.60702 4.67731 4.83517 4.87581 4.91284 4.98696 5.06239 5.16234 5.27632 5.31191 5.35424 5.41998 5.53559 5.58840 5.85783 6.39305 6.64651 7.46103 7.55063 8.25919 8.49241 9.42075 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.007368 B = 0.007084 C = 0.003887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3799.459032 B = 3951.803403 C = 7201.297346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 H 0.061 0.939 4 C -0.108 4.108 5 C -0.130 4.130 6 C 0.100 3.900 7 N -0.613 5.613 8 C 0.460 3.540 9 O -0.488 6.488 10 C -0.176 4.176 11 C 0.247 3.753 12 F -0.202 7.202 13 F -0.186 7.186 14 C 0.245 3.755 15 F -0.180 7.180 16 F -0.202 7.202 17 C 0.156 3.844 18 H 0.061 0.939 19 C 0.165 3.835 20 N -0.695 5.695 21 C -0.211 4.211 22 H 0.054 0.946 23 C -0.075 4.075 24 N -0.960 5.960 25 Si 0.955 3.045 26 H -0.276 1.276 27 H -0.289 1.289 28 H -0.302 1.302 29 H 0.041 0.959 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.105 0.895 35 H 0.060 0.940 36 H 0.107 0.893 37 H 0.077 0.923 38 H 0.157 0.843 39 H 0.158 0.842 40 H 0.197 0.803 41 H 0.011 0.989 42 H 0.015 0.985 43 H 0.369 0.631 44 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.292 -1.320 -21.226 23.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.079 0.921 4 C -0.146 4.146 5 C -0.168 4.168 6 C -0.022 4.022 7 N -0.350 5.350 8 C 0.246 3.754 9 O -0.359 6.359 10 C -0.216 4.216 11 C 0.210 3.790 12 F -0.183 7.183 13 F -0.167 7.167 14 C 0.191 3.809 15 F -0.161 7.161 16 F -0.184 7.184 17 C 0.052 3.948 18 H 0.079 0.921 19 C 0.038 3.962 20 N -0.336 5.336 21 C -0.344 4.344 22 H 0.072 0.928 23 C -0.267 4.267 24 N -0.613 5.613 25 Si 0.787 3.213 26 H -0.201 1.201 27 H -0.216 1.216 28 H -0.230 1.230 29 H 0.060 0.940 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.123 0.877 35 H 0.079 0.921 36 H 0.125 0.875 37 H 0.095 0.905 38 H 0.175 0.825 39 H 0.176 0.824 40 H 0.213 0.787 41 H 0.029 0.971 42 H 0.033 0.967 43 H 0.201 0.799 44 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 8.938 -0.795 -20.550 22.423 hybrid contribution -0.192 0.471 1.831 1.901 sum 8.745 -0.325 -18.718 20.663 Atomic orbital electron populations 1.21823 0.94039 1.02337 1.01998 1.21422 0.96394 0.99230 0.94102 0.92088 1.21563 0.95879 1.00868 0.96259 1.21848 0.95573 1.01293 0.98049 1.21965 0.99367 0.97744 0.83089 1.47903 1.05491 1.62738 1.18859 1.20559 0.89007 0.82932 0.82947 1.91242 1.72751 1.38136 1.33753 1.22869 0.94364 1.07302 0.97069 1.22367 0.93842 0.75975 0.86849 1.93036 1.95482 1.32851 1.96896 1.93204 1.87311 1.82291 1.53912 1.23189 0.86033 0.99852 0.71864 1.93038 1.86408 1.86112 1.50499 1.93028 1.85270 1.88918 1.51141 1.21331 0.80089 0.98463 0.94899 0.92067 1.20910 0.94926 0.94649 0.85695 1.42267 1.65581 1.24836 1.00963 1.19389 1.25982 1.03092 0.85935 0.92803 1.25214 1.02916 0.98429 1.00155 1.69778 1.46981 1.16915 1.27621 0.85305 0.76741 0.77476 0.81779 1.20096 1.21639 1.23028 0.94024 0.90466 0.92178 0.91195 0.89984 0.87681 0.92111 0.87519 0.90468 0.82526 0.82447 0.78674 0.97121 0.96736 0.79885 0.94813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 8.97 71.98 0.65 -2.60 16 2 C -0.09 -2.18 2.34 -10.72 -0.03 -2.20 16 3 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 4 C -0.11 -1.70 5.17 30.62 0.16 -1.54 16 5 C -0.13 -1.68 6.06 30.53 0.19 -1.49 16 6 C 0.10 1.61 6.29 86.22 0.54 2.15 16 7 N -0.61 -17.48 2.98 -795.86 -2.37 -19.85 16 8 C 0.46 16.34 6.73 87.66 0.59 16.93 16 9 O -0.49 -23.95 8.49 -3.01 -0.03 -23.98 16 10 C -0.18 -4.24 3.60 29.85 0.11 -4.13 16 11 C 0.25 7.90 1.40 30.60 0.04 7.94 16 12 F -0.20 -8.03 16.10 44.97 0.72 -7.31 16 13 F -0.19 -8.23 16.13 44.97 0.73 -7.51 16 14 C 0.24 5.34 4.83 71.98 0.35 5.69 16 15 F -0.18 -3.58 16.80 44.97 0.76 -2.82 16 16 F -0.20 -5.83 17.30 44.97 0.78 -5.05 16 17 C 0.16 5.05 2.42 44.97 0.11 5.15 16 18 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 19 C 0.16 7.37 4.76 86.38 0.41 7.78 16 20 N -0.70 -38.40 3.15 -343.46 -1.08 -39.48 16 21 C -0.21 -13.12 9.69 84.03 0.81 -12.30 16 22 H 0.05 3.36 7.83 -2.91 -0.02 3.34 16 23 C -0.08 -4.74 5.50 84.86 0.47 -4.28 16 24 N -0.96 -62.41 13.06 21.65 0.28 -62.13 16 25 Si 0.96 51.36 29.55 68.60 2.03 53.38 16 26 H -0.28 -14.27 7.11 99.48 0.71 -13.57 16 27 H -0.29 -15.07 7.11 99.48 0.71 -14.36 16 28 H -0.30 -16.49 7.11 99.48 0.71 -15.78 16 29 H 0.04 1.12 6.47 -2.39 -0.02 1.10 16 30 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 33 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.11 1.11 5.97 -2.39 -0.01 1.09 16 37 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.16 2.55 8.13 -2.39 -0.02 2.53 16 39 H 0.16 2.47 7.11 -2.39 -0.02 2.45 16 40 H 0.20 2.15 8.14 -2.39 -0.02 2.13 16 41 H 0.01 0.55 6.50 -2.39 -0.02 0.54 16 42 H 0.02 0.67 6.34 -2.39 -0.02 0.66 16 43 H 0.37 21.44 6.82 -92.71 -0.63 20.81 16 44 H 0.24 15.38 8.31 -92.70 -0.77 14.61 16 Total: -1.00 -87.69 357.52 6.62 -81.07 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: 0.40 Total: 16.56 kcal Atomic # 6 Polarization: 12.71 SS G_CDS: 4.40 Total: 17.10 kcal Atomic # 7 Polarization: -118.29 SS G_CDS: -3.17 Total: -121.46 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -0.03 Total: -23.98 kcal Atomic # 9 Polarization: -25.67 SS G_CDS: 2.98 Total: -22.68 kcal Atomic # 14 Polarization: 51.36 SS G_CDS: 2.03 Total: 53.38 kcal Total: -87.69 6.62 -81.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319859506.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.824 kcal (2) G-P(sol) polarization free energy of solvation -87.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds