Wall clock time and date at job start Sat Apr 11 2020 06:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 108.82494 * 2 1 4 4 C 1.45818 * 108.84830 * 241.51241 * 2 1 3 5 5 C 1.53994 * 113.29621 * 174.16204 * 4 2 1 6 6 N 1.44678 * 109.43353 * 81.00104 * 5 4 2 7 7 C 1.34775 * 119.72376 * 81.48264 * 6 5 4 8 8 O 1.21354 * 119.99739 * 5.03172 * 7 6 5 9 9 C 1.49450 * 120.00330 * 185.03860 * 7 6 5 10 10 O 1.21342 * 120.00235 * 85.41064 * 9 7 6 11 11 N 1.34782 * 119.99528 * 265.41449 * 9 7 6 12 12 C 1.46989 * 120.61403 * 354.97827 * 11 9 7 13 13 C 1.53193 * 108.73916 * 126.39005 * 12 11 9 14 14 C 1.53042 * 109.34004 * 54.61657 * 13 12 11 15 15 C 1.53039 * 109.53915 * 298.61846 * 14 13 12 16 16 H 1.08999 * 109.49896 * 301.38512 * 15 14 13 17 17 C 1.50699 * 109.49613 * 181.31575 * 15 14 13 18 18 H 1.07995 * 120.00225 * 359.97438 * 17 15 14 19 19 C 1.37874 * 119.99669 * 180.02562 * 17 15 14 20 20 N 1.31515 * 120.00414 * 359.97438 * 19 17 15 21 21 Si 1.86804 * 120.00041 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47041 * 59.99131 * 21 19 17 23 23 H 1.48494 * 109.47429 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46831 * 299.99741 * 21 19 17 25 25 C 1.46927 * 120.62804 * 174.95077 * 11 9 7 26 26 C 1.46390 * 120.54915 * 261.76136 * 6 5 4 27 27 C 1.53480 * 115.16611 * 42.14657 * 26 6 5 28 28 S 1.79953 * 110.98540 * 43.32540 * 27 26 6 29 29 H 1.08998 * 109.47596 * 178.48495 * 1 2 3 30 30 H 1.09005 * 109.47286 * 298.49105 * 1 2 3 31 31 H 1.09002 * 109.46617 * 58.48407 * 1 2 3 32 32 H 1.09001 * 108.72097 * 53.17120 * 4 2 1 33 33 H 1.09005 * 108.71705 * 295.14179 * 4 2 1 34 34 H 1.09008 * 109.47323 * 321.01927 * 5 4 2 35 35 H 1.08999 * 109.49213 * 200.99940 * 5 4 2 36 36 H 1.08994 * 109.63409 * 6.59700 * 12 11 9 37 37 H 1.09002 * 109.58041 * 246.14317 * 12 11 9 38 38 H 1.08997 * 109.49389 * 294.65003 * 13 12 11 39 39 H 1.09000 * 109.50072 * 174.58541 * 13 12 11 40 40 H 1.09002 * 109.45886 * 58.64218 * 14 13 12 41 41 H 1.09000 * 109.45693 * 178.60210 * 14 13 12 42 42 H 0.96996 * 120.00421 * 180.02562 * 20 19 17 43 43 H 1.09003 * 109.58127 * 113.84118 * 25 11 9 44 44 H 1.08999 * 109.70688 * 353.49389 * 25 11 9 45 45 H 1.09006 * 108.38672 * 163.68919 * 26 6 5 46 46 H 1.09001 * 108.38884 * 280.84635 * 26 6 5 47 47 H 1.08994 * 109.28121 * 282.90785 * 27 26 6 48 48 H 1.08997 * 109.11847 * 163.63699 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8817 1.0317 0.0000 4 6 2.0010 -0.6582 -1.2129 5 6 3.5294 -0.5899 -1.3886 6 7 4.1530 -1.6167 -0.5824 7 6 4.2159 -2.8817 -1.0430 8 8 3.8338 -3.1382 -2.1659 9 6 4.7561 -3.9686 -0.1710 10 8 4.0254 -4.5364 0.6138 11 7 6.0551 -4.3179 -0.2563 12 6 6.9264 -3.7172 -1.2764 13 6 8.1592 -3.1268 -0.5848 14 6 8.8339 -4.2101 0.2599 15 6 7.8631 -4.6971 1.3380 16 1 7.5621 -3.8565 1.9632 17 6 8.5393 -5.7406 2.1895 18 1 9.5594 -6.0283 1.9824 19 6 7.8552 -6.3287 3.2321 20 7 6.6127 -5.9787 3.4839 21 14 8.6935 -7.6217 4.2880 22 1 9.8935 -7.0314 4.9337 23 1 7.7510 -8.0939 5.3338 24 1 9.1028 -8.7671 3.4361 25 6 6.6268 -5.3059 0.6688 26 6 4.7107 -1.2942 0.7321 27 6 3.8529 -0.3569 1.5931 28 16 2.1160 -0.8216 1.5172 29 1 -0.3634 -1.0273 -0.0272 30 1 -0.3634 0.4902 0.9032 31 1 -0.3632 0.5372 -0.8761 32 1 1.5284 -0.1852 -2.0737 33 1 1.6989 -1.7051 -1.1826 34 1 3.8882 0.3893 -1.0712 35 1 3.7824 -0.7473 -2.4370 36 1 6.3874 -2.9272 -1.7993 37 1 7.2378 -4.4824 -1.9874 38 1 7.8550 -2.3009 0.0581 39 1 8.8593 -2.7634 -1.3371 40 1 9.1156 -5.0465 -0.3798 41 1 9.7255 -3.7987 0.7332 42 1 6.1315 -6.3922 4.2176 43 1 6.9136 -6.2006 0.1163 44 1 5.8907 -5.5664 1.4293 45 1 4.8590 -2.2247 1.2804 46 1 5.6846 -0.8267 0.5872 47 1 3.9653 0.6658 1.2333 48 1 4.1926 -0.4114 2.6273 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328227726.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:46 Heat of formation + Delta-G solvation = -70.622123 kcal Electronic energy + Delta-G solvation = -29506.858703 eV Core-core repulsion = 25687.753816 eV Total energy + Delta-G solvation = -3819.104887 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.74321 -38.74926 -37.01799 -36.68504 -35.18639 -33.43529 -31.87835 -31.24905 -29.98989 -29.45996 -26.15597 -25.11594 -24.35648 -23.69202 -22.47239 -21.92807 -21.23445 -19.34947 -18.46669 -17.48481 -16.92160 -16.75168 -16.29863 -16.11285 -15.48386 -15.02206 -14.76869 -14.61298 -14.42615 -14.11448 -13.87617 -13.70279 -13.59713 -13.31332 -13.20761 -12.82951 -12.69580 -12.35894 -12.22062 -12.13466 -12.00399 -11.76590 -11.52785 -11.23942 -11.23403 -11.06905 -10.98043 -10.91650 -10.58087 -10.45774 -10.31005 -9.99700 -9.78943 -9.28599 -9.20982 -8.91627 -8.82796 -8.49664 -7.92907 -7.70860 -6.06059 -4.14703 1.53522 2.36652 2.41281 2.54426 3.07726 3.29412 3.36169 3.36909 3.67339 4.28586 4.38239 4.42786 4.53197 4.62139 4.77541 4.90774 5.06785 5.14553 5.20748 5.25096 5.25769 5.35259 5.37433 5.40889 5.50369 5.55605 5.58619 5.64157 5.68316 5.87229 5.92437 6.00624 6.07248 6.22046 6.39718 6.49462 6.55707 6.75403 6.87315 6.99281 7.08454 7.10419 7.51892 7.75831 7.87578 7.93589 8.04085 8.28876 8.51637 8.88848 9.51581 10.99532 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015789 B = 0.003631 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.996167 B = 7709.593977 C = 8532.501431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.051 4.051 3 H 0.082 0.918 4 C -0.139 4.139 5 C 0.111 3.889 6 N -0.586 5.586 7 C 0.525 3.475 8 O -0.520 6.520 9 C 0.505 3.495 10 O -0.503 6.503 11 N -0.589 5.589 12 C 0.108 3.892 13 C -0.131 4.131 14 C -0.112 4.112 15 C 0.043 3.957 16 H 0.030 0.970 17 C -0.523 4.523 18 H 0.059 0.941 19 C 0.064 3.936 20 N -0.881 5.881 21 Si 0.893 3.107 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 C 0.111 3.889 26 C 0.102 3.898 27 C -0.102 4.102 28 S -0.229 6.229 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.051 0.949 41 H 0.054 0.946 42 H 0.265 0.735 43 H 0.047 0.953 44 H 0.124 0.876 45 H 0.096 0.904 46 H 0.077 0.923 47 H 0.086 0.914 48 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.595 16.094 -8.635 19.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.180 4.180 3 H 0.100 0.900 4 C -0.179 4.179 5 C -0.012 4.012 6 N -0.321 5.321 7 C 0.308 3.692 8 O -0.395 6.395 9 C 0.286 3.714 10 O -0.378 6.378 11 N -0.323 5.323 12 C -0.015 4.015 13 C -0.170 4.170 14 C -0.149 4.149 15 C 0.024 3.976 16 H 0.048 0.952 17 C -0.561 4.561 18 H 0.077 0.923 19 C -0.139 4.139 20 N -0.518 5.518 21 Si 0.721 3.279 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.202 1.202 25 C -0.009 4.009 26 C -0.023 4.023 27 C -0.252 4.252 28 S -0.001 6.001 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.108 0.892 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.066 0.934 44 H 0.142 0.858 45 H 0.115 0.885 46 H 0.095 0.905 47 H 0.104 0.896 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.924 14.964 -7.953 18.306 hybrid contribution 1.169 0.107 -0.199 1.191 sum -5.755 15.071 -8.152 18.075 Atomic orbital electron populations 1.21670 0.91731 1.03235 1.02602 1.21901 0.99979 1.00887 0.95203 0.89950 1.21125 0.96329 1.03326 0.97160 1.21389 0.92011 0.90806 0.97003 1.47406 1.58452 1.07888 1.18329 1.20741 0.78584 0.82906 0.86933 1.90742 1.48635 1.81512 1.18634 1.19955 0.83455 0.84504 0.83457 1.90846 1.56649 1.53945 1.36313 1.48624 1.07277 1.42810 1.33634 1.21707 0.92020 0.97406 0.90411 1.21947 0.96278 0.99394 0.99339 1.21646 0.99036 0.96431 0.97818 1.18957 0.90477 0.96380 0.91783 0.95234 1.21019 0.99112 1.22570 1.13410 0.92298 1.25038 0.94893 0.96780 0.97164 1.69840 1.09572 1.42316 1.30088 0.86639 0.79244 0.81917 0.80119 1.20276 1.21216 1.20211 1.22474 0.99424 0.88096 0.90900 1.21756 0.95524 1.01866 0.83150 1.23661 0.95198 1.01529 1.04793 1.87099 1.08546 1.71926 1.32573 0.91623 0.91506 0.91241 0.90082 0.90054 0.90273 0.89219 0.91622 0.91244 0.92195 0.91955 0.92976 0.92769 0.92453 0.93414 0.85776 0.88520 0.90506 0.89567 0.85968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.15 9.03 37.15 0.34 -0.81 16 2 C -0.05 -0.50 2.63 -30.13 -0.08 -0.57 16 3 H 0.08 0.65 8.11 -51.92 -0.42 0.23 16 4 C -0.14 -1.45 4.59 -29.61 -0.14 -1.58 16 5 C 0.11 1.17 5.26 -4.50 -0.02 1.15 16 6 N -0.59 -8.07 2.41 -174.79 -0.42 -8.49 16 7 C 0.52 9.30 5.11 -11.59 -0.06 9.24 16 8 O -0.52 -10.05 16.72 5.49 0.09 -9.96 16 9 C 0.51 10.55 5.42 -11.58 -0.06 10.49 16 10 O -0.50 -12.48 16.47 5.50 0.09 -12.39 16 11 N -0.59 -11.76 2.97 -173.22 -0.52 -12.28 16 12 C 0.11 1.73 6.36 -3.68 -0.02 1.71 16 13 C -0.13 -1.98 6.08 -26.61 -0.16 -2.14 16 14 C -0.11 -2.08 5.11 -26.69 -0.14 -2.21 16 15 C 0.04 1.00 2.25 -91.65 -0.21 0.79 16 16 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 17 C -0.52 -13.55 8.56 -34.44 -0.29 -13.84 16 18 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 19 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 20 N -0.88 -24.72 11.40 55.43 0.63 -24.09 16 21 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 25 C 0.11 2.59 5.39 -3.71 -0.02 2.57 16 26 C 0.10 1.32 5.90 -3.85 -0.02 1.30 16 27 C -0.10 -1.11 5.90 37.41 0.22 -0.89 16 28 S -0.23 -2.97 20.94 -107.50 -2.25 -5.22 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.46 8.11 -51.93 -0.42 0.04 16 32 H 0.08 0.67 8.04 -51.93 -0.42 0.25 16 33 H 0.08 1.13 7.82 -51.93 -0.41 0.72 16 34 H 0.08 0.63 7.52 -51.92 -0.39 0.23 16 35 H 0.09 0.96 7.57 -51.93 -0.39 0.57 16 36 H 0.07 0.97 6.30 -51.93 -0.33 0.64 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 43 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 44 H 0.12 3.40 5.17 -51.93 -0.27 3.13 16 45 H 0.10 1.62 6.18 -51.93 -0.32 1.30 16 46 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 47 H 0.09 0.70 7.91 -51.80 -0.41 0.29 16 48 H 0.12 1.27 8.14 -51.80 -0.42 0.85 16 LS Contribution 383.00 15.07 5.77 5.77 Total: -1.00 -31.37 383.00 -10.35 -41.72 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -7.97 Total: 2.40 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: -0.76 Total: 6.82 kcal Atomic # 7 Polarization: -44.55 SS G_CDS: -0.30 Total: -44.86 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: 0.18 Total: -22.35 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: -2.97 SS G_CDS: -2.25 Total: -5.22 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.37 -10.35 -41.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328227726.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.900 kcal (2) G-P(sol) polarization free energy of solvation -31.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds