Wall clock time and date at job start Sat Apr 11 2020 06:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 108.82494 * 2 1 4 4 C 1.45818 * 108.84830 * 241.51241 * 2 1 3 5 5 C 1.53994 * 113.29621 * 174.16204 * 4 2 1 6 6 N 1.44678 * 109.43353 * 81.00104 * 5 4 2 7 7 C 1.34775 * 119.72376 * 81.48264 * 6 5 4 8 8 O 1.21354 * 119.99739 * 5.03172 * 7 6 5 9 9 C 1.49450 * 120.00330 * 185.03860 * 7 6 5 10 10 O 1.21342 * 120.00235 * 85.41064 * 9 7 6 11 11 N 1.34782 * 119.99528 * 265.41449 * 9 7 6 12 12 C 1.46989 * 120.61403 * 354.97827 * 11 9 7 13 13 C 1.53193 * 108.73916 * 126.39005 * 12 11 9 14 14 C 1.53042 * 109.34004 * 54.61657 * 13 12 11 15 15 C 1.53039 * 109.53915 * 298.61846 * 14 13 12 16 16 H 1.08999 * 109.49896 * 301.38512 * 15 14 13 17 17 C 1.50699 * 109.49613 * 181.31575 * 15 14 13 18 18 H 1.07995 * 120.00225 * 359.97438 * 17 15 14 19 19 C 1.37874 * 119.99669 * 180.02562 * 17 15 14 20 20 N 1.31515 * 120.00414 * 359.97438 * 19 17 15 21 21 Si 1.86804 * 120.00041 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47041 * 59.99131 * 21 19 17 23 23 H 1.48494 * 109.47429 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46831 * 299.99741 * 21 19 17 25 25 C 1.46927 * 120.62804 * 174.95077 * 11 9 7 26 26 C 1.46390 * 120.54915 * 261.76136 * 6 5 4 27 27 C 1.53480 * 115.16611 * 42.14657 * 26 6 5 28 28 S 1.79953 * 110.98540 * 43.32540 * 27 26 6 29 29 H 1.08998 * 109.47596 * 178.48495 * 1 2 3 30 30 H 1.09005 * 109.47286 * 298.49105 * 1 2 3 31 31 H 1.09002 * 109.46617 * 58.48407 * 1 2 3 32 32 H 1.09001 * 108.72097 * 53.17120 * 4 2 1 33 33 H 1.09005 * 108.71705 * 295.14179 * 4 2 1 34 34 H 1.09008 * 109.47323 * 321.01927 * 5 4 2 35 35 H 1.08999 * 109.49213 * 200.99940 * 5 4 2 36 36 H 1.08994 * 109.63409 * 6.59700 * 12 11 9 37 37 H 1.09002 * 109.58041 * 246.14317 * 12 11 9 38 38 H 1.08997 * 109.49389 * 294.65003 * 13 12 11 39 39 H 1.09000 * 109.50072 * 174.58541 * 13 12 11 40 40 H 1.09002 * 109.45886 * 58.64218 * 14 13 12 41 41 H 1.09000 * 109.45693 * 178.60210 * 14 13 12 42 42 H 0.96996 * 120.00421 * 180.02562 * 20 19 17 43 43 H 1.09003 * 109.58127 * 113.84118 * 25 11 9 44 44 H 1.08999 * 109.70688 * 353.49389 * 25 11 9 45 45 H 1.09006 * 108.38672 * 163.68919 * 26 6 5 46 46 H 1.09001 * 108.38884 * 280.84635 * 26 6 5 47 47 H 1.08994 * 109.28121 * 282.90785 * 27 26 6 48 48 H 1.08997 * 109.11847 * 163.63699 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8817 1.0317 0.0000 4 6 2.0010 -0.6582 -1.2129 5 6 3.5294 -0.5899 -1.3886 6 7 4.1530 -1.6167 -0.5824 7 6 4.2159 -2.8817 -1.0430 8 8 3.8338 -3.1382 -2.1659 9 6 4.7561 -3.9686 -0.1710 10 8 4.0254 -4.5364 0.6138 11 7 6.0551 -4.3179 -0.2563 12 6 6.9264 -3.7172 -1.2764 13 6 8.1592 -3.1268 -0.5848 14 6 8.8339 -4.2101 0.2599 15 6 7.8631 -4.6971 1.3380 16 1 7.5621 -3.8565 1.9632 17 6 8.5393 -5.7406 2.1895 18 1 9.5594 -6.0283 1.9824 19 6 7.8552 -6.3287 3.2321 20 7 6.6127 -5.9787 3.4839 21 14 8.6935 -7.6217 4.2880 22 1 9.8935 -7.0314 4.9337 23 1 7.7510 -8.0939 5.3338 24 1 9.1028 -8.7671 3.4361 25 6 6.6268 -5.3059 0.6688 26 6 4.7107 -1.2942 0.7321 27 6 3.8529 -0.3569 1.5931 28 16 2.1160 -0.8216 1.5172 29 1 -0.3634 -1.0273 -0.0272 30 1 -0.3634 0.4902 0.9032 31 1 -0.3632 0.5372 -0.8761 32 1 1.5284 -0.1852 -2.0737 33 1 1.6989 -1.7051 -1.1826 34 1 3.8882 0.3893 -1.0712 35 1 3.7824 -0.7473 -2.4370 36 1 6.3874 -2.9272 -1.7993 37 1 7.2378 -4.4824 -1.9874 38 1 7.8550 -2.3009 0.0581 39 1 8.8593 -2.7634 -1.3371 40 1 9.1156 -5.0465 -0.3798 41 1 9.7255 -3.7987 0.7332 42 1 6.1315 -6.3922 4.2176 43 1 6.9136 -6.2006 0.1163 44 1 5.8907 -5.5664 1.4293 45 1 4.8590 -2.2247 1.2804 46 1 5.6846 -0.8267 0.5872 47 1 3.9653 0.6658 1.2333 48 1 4.1926 -0.4114 2.6273 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328227726.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:45 Heat of formation + Delta-G solvation = -89.682082 kcal Electronic energy + Delta-G solvation = -29507.685205 eV Core-core repulsion = 25687.753816 eV Total energy + Delta-G solvation = -3819.931389 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.15991 -40.20310 -38.47825 -38.05374 -36.12048 -35.32054 -33.53656 -32.20513 -31.68072 -30.45407 -27.70022 -26.86676 -25.50672 -24.79276 -23.62820 -23.44883 -22.36630 -20.92071 -19.77832 -18.97180 -18.30608 -18.03485 -17.83412 -17.49767 -16.63189 -16.57052 -16.23982 -15.85343 -15.68321 -15.32737 -15.24274 -15.02030 -14.70765 -14.56478 -14.41701 -14.31504 -14.19655 -13.92336 -13.60175 -13.20076 -12.92773 -12.86402 -12.76574 -12.66388 -12.53146 -12.47571 -12.31998 -12.27642 -12.01622 -11.98319 -11.84402 -11.66885 -11.11838 -10.96301 -10.66010 -10.57275 -10.48933 -9.96544 -9.62605 -8.72286 -8.11097 -6.26924 0.66860 0.96581 1.08215 1.42722 1.43859 1.51525 1.51968 1.62228 2.29339 2.43502 3.08185 3.19130 3.46638 3.59341 3.80289 3.90472 3.91744 4.07560 4.15787 4.27410 4.31051 4.34841 4.43291 4.47669 4.52692 4.58687 4.65295 4.67444 4.74750 4.76264 4.78321 4.84000 4.89352 5.07537 5.13735 5.19501 5.21701 5.23696 5.31035 5.37401 5.43016 5.59443 5.82917 5.87146 5.95222 6.30130 6.33559 6.61565 6.81801 6.90549 7.43438 8.92110 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015789 B = 0.003631 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.996167 B = 7709.593977 C = 8532.501431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.032 4.032 3 H 0.117 0.883 4 C -0.136 4.136 5 C 0.104 3.896 6 N -0.570 5.570 7 C 0.532 3.468 8 O -0.541 6.541 9 C 0.498 3.502 10 O -0.559 6.559 11 N -0.588 5.588 12 C 0.103 3.897 13 C -0.120 4.120 14 C -0.106 4.106 15 C 0.044 3.956 16 H 0.000 1.000 17 C -0.535 4.535 18 H 0.063 0.937 19 C 0.014 3.986 20 N -0.914 5.914 21 Si 0.953 3.047 22 H -0.266 1.266 23 H -0.291 1.291 24 H -0.270 1.270 25 C 0.123 3.877 26 C 0.101 3.899 27 C -0.083 4.083 28 S -0.319 6.319 29 H 0.041 0.959 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.114 0.886 33 H 0.038 0.962 34 H 0.122 0.878 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.064 0.936 39 H 0.106 0.894 40 H 0.054 0.946 41 H 0.061 0.939 42 H 0.259 0.741 43 H 0.038 0.962 44 H 0.079 0.921 45 H 0.048 0.952 46 H 0.110 0.890 47 H 0.128 0.872 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.051 19.465 -10.749 22.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.160 4.160 3 H 0.135 0.865 4 C -0.175 4.175 5 C -0.017 4.017 6 N -0.302 5.302 7 C 0.314 3.686 8 O -0.418 6.418 9 C 0.280 3.720 10 O -0.437 6.437 11 N -0.320 5.320 12 C -0.019 4.019 13 C -0.158 4.158 14 C -0.144 4.144 15 C 0.025 3.975 16 H 0.018 0.982 17 C -0.573 4.573 18 H 0.082 0.918 19 C -0.186 4.186 20 N -0.552 5.552 21 Si 0.779 3.221 22 H -0.191 1.191 23 H -0.217 1.217 24 H -0.195 1.195 25 C 0.002 3.998 26 C -0.024 4.024 27 C -0.232 4.232 28 S -0.092 6.092 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.116 0.884 32 H 0.132 0.868 33 H 0.057 0.943 34 H 0.140 0.860 35 H 0.112 0.888 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.083 0.917 39 H 0.125 0.875 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.056 0.944 44 H 0.097 0.903 45 H 0.067 0.933 46 H 0.128 0.872 47 H 0.146 0.854 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.343 18.391 -10.089 21.646 hybrid contribution 0.665 -0.919 0.449 1.220 sum -4.678 17.472 -9.639 20.495 Atomic orbital electron populations 1.21690 0.91139 1.02247 1.04011 1.21963 1.00303 1.01616 0.92112 0.86540 1.21108 0.96540 1.01123 0.98772 1.21782 0.91840 0.91274 0.96808 1.47398 1.57206 1.06944 1.18670 1.20013 0.78902 0.83511 0.86130 1.90730 1.49977 1.81960 1.19117 1.20671 0.83255 0.84928 0.83107 1.90803 1.58134 1.55947 1.38856 1.48627 1.07741 1.42018 1.33659 1.22030 0.91987 0.98215 0.89647 1.21894 0.96099 0.97985 0.99778 1.21535 0.98187 0.97786 0.96859 1.18873 0.91243 0.94690 0.92681 0.98219 1.21478 0.99379 1.22831 1.13641 0.91837 1.25824 0.95307 0.98806 0.98653 1.70038 1.11032 1.43654 1.30484 0.85684 0.78344 0.79662 0.78442 1.19114 1.21731 1.19544 1.21944 0.98493 0.88839 0.90523 1.21864 0.97650 1.00390 0.82510 1.23638 0.92254 1.02756 1.04545 1.87521 1.11639 1.73798 1.36220 0.93940 0.91300 0.88395 0.86840 0.94319 0.86003 0.88757 0.89582 0.90116 0.91728 0.87535 0.92697 0.92046 0.93148 0.94387 0.90261 0.93315 0.87229 0.85399 0.86055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 9.03 71.98 0.65 -1.37 16 2 C -0.03 -0.54 2.63 28.39 0.07 -0.46 16 3 H 0.12 1.23 8.11 -2.39 -0.02 1.21 16 4 C -0.14 -2.46 4.59 28.73 0.13 -2.33 16 5 C 0.10 1.82 5.26 87.06 0.46 2.27 16 6 N -0.57 -14.77 2.41 -825.26 -1.99 -16.76 16 7 C 0.53 18.90 5.11 87.27 0.45 19.35 16 8 O -0.54 -20.75 16.72 -3.26 -0.05 -20.80 16 9 C 0.50 21.80 5.42 87.27 0.47 22.28 16 10 O -0.56 -30.12 16.47 -3.22 -0.05 -30.18 16 11 N -0.59 -24.10 2.97 -820.32 -2.44 -26.53 16 12 C 0.10 3.10 6.36 86.35 0.55 3.65 16 13 C -0.12 -3.22 6.08 30.67 0.19 -3.04 16 14 C -0.11 -3.78 5.11 30.62 0.16 -3.63 16 15 C 0.04 2.11 2.25 -11.46 -0.03 2.08 16 16 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 17 C -0.53 -28.31 8.56 25.60 0.22 -28.09 16 18 H 0.06 3.23 7.74 -2.91 -0.02 3.20 16 19 C 0.01 0.76 5.30 84.65 0.45 1.21 16 20 N -0.91 -54.20 11.40 21.45 0.24 -53.95 16 21 Si 0.95 43.46 29.54 68.60 2.03 45.48 16 22 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 23 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 24 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 25 C 0.12 6.08 5.39 86.36 0.47 6.55 16 26 C 0.10 2.48 5.90 86.56 0.51 2.99 16 27 C -0.08 -1.64 5.90 72.14 0.43 -1.21 16 28 S -0.32 -8.24 20.94 -56.49 -1.18 -9.42 16 29 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 31 H 0.10 0.95 8.11 -2.39 -0.02 0.93 16 32 H 0.11 1.39 8.04 -2.39 -0.02 1.37 16 33 H 0.04 1.06 7.82 -2.38 -0.02 1.04 16 34 H 0.12 1.16 7.52 -2.38 -0.02 1.14 16 35 H 0.09 1.65 7.57 -2.39 -0.02 1.63 16 36 H 0.09 2.29 6.30 -2.39 -0.02 2.27 16 37 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.05 1.92 8.14 -2.39 -0.02 1.91 16 41 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 43 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.08 4.69 5.17 -2.39 -0.01 4.68 16 45 H 0.05 1.71 6.18 -2.38 -0.01 1.70 16 46 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 47 H 0.13 1.46 7.91 -2.47 -0.02 1.44 16 48 H 0.12 2.43 8.14 -2.47 -0.02 2.41 16 Total: -1.00 -76.52 383.00 2.66 -73.86 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: 0.94 Total: 18.05 kcal Atomic # 6 Polarization: 15.08 SS G_CDS: 5.17 Total: 20.25 kcal Atomic # 7 Polarization: -93.07 SS G_CDS: -4.18 Total: -97.25 kcal Atomic # 8 Polarization: -50.87 SS G_CDS: -0.11 Total: -50.98 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 16 Polarization: -8.24 SS G_CDS: -1.18 Total: -9.42 kcal Total: -76.52 2.66 -73.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328227726.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.818 kcal (2) G-P(sol) polarization free energy of solvation -76.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds