Wall clock time and date at job start Sat Apr 11 2020 06:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.69575 * 2 1 4 4 S 1.81745 * 109.57976 * 239.65664 * 2 1 3 5 5 C 1.81742 * 102.30363 * 185.66823 * 4 2 1 6 6 C 1.52726 * 108.84261 * 54.42519 * 5 4 2 7 7 N 1.46377 * 109.77155 * 302.51911 * 6 5 4 8 8 C 1.34777 * 119.64831 * 245.08920 * 7 6 5 9 9 O 1.21345 * 119.99948 * 184.69480 * 8 7 6 10 10 C 1.49446 * 119.99979 * 4.41327 * 8 7 6 11 11 O 1.21349 * 120.00255 * 84.57199 * 10 8 7 12 12 N 1.34776 * 120.00074 * 264.57665 * 10 8 7 13 13 C 1.46923 * 120.63310 * 4.76155 * 12 10 8 14 14 C 1.52754 * 109.00770 * 233.58654 * 13 12 10 15 15 C 1.53047 * 109.38416 * 305.58223 * 14 13 12 16 16 C 1.50699 * 109.45014 * 181.25330 * 15 14 13 17 17 H 1.07993 * 120.00269 * 239.93720 * 16 15 14 18 18 C 1.37883 * 119.99608 * 59.94449 * 16 15 14 19 19 N 1.31509 * 120.00031 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99550 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47588 * 59.99794 * 20 18 16 22 22 H 1.48506 * 109.46985 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47203 * 299.99341 * 20 18 16 24 24 C 1.53037 * 109.53463 * 61.24135 * 15 14 13 25 25 C 1.46930 * 120.62924 * 185.03623 * 12 10 8 26 26 C 1.46374 * 120.70313 * 64.80897 * 7 6 5 27 27 H 1.09001 * 109.47110 * 55.19641 * 26 7 6 28 28 C 1.53008 * 109.46651 * 175.18604 * 26 7 6 29 29 H 1.09000 * 109.46839 * 299.66145 * 1 2 3 30 30 H 1.08999 * 109.46880 * 59.65253 * 1 2 3 31 31 H 1.08995 * 109.47104 * 179.65756 * 1 2 3 32 32 H 1.09000 * 109.58245 * 174.33503 * 5 4 2 33 33 H 1.09002 * 109.58258 * 294.74401 * 5 4 2 34 34 H 1.09002 * 109.32897 * 182.42612 * 6 5 4 35 35 H 1.09000 * 109.32293 * 62.60917 * 6 5 4 36 36 H 1.09003 * 109.58484 * 353.41376 * 13 12 10 37 37 H 1.09001 * 109.59156 * 113.84163 * 13 12 10 38 38 H 1.09004 * 109.56658 * 185.55252 * 14 13 12 39 39 H 1.09004 * 109.39201 * 65.51210 * 14 13 12 40 40 H 1.09002 * 109.45416 * 301.22351 * 15 14 13 41 41 H 0.97009 * 119.99768 * 180.02562 * 19 18 16 42 42 H 1.09000 * 109.49475 * 178.68706 * 24 15 14 43 43 H 1.09005 * 109.52767 * 58.60304 * 24 15 14 44 44 H 1.09001 * 109.58864 * 246.15647 * 25 12 10 45 45 H 1.09000 * 109.58663 * 6.58334 * 25 12 10 46 46 H 1.08993 * 109.47255 * 62.60926 * 28 26 7 47 47 H 1.09003 * 109.46826 * 182.61667 * 28 26 7 48 48 H 1.09005 * 109.46627 * 302.61082 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 16 2.1391 -0.8651 -1.4778 5 6 3.9337 -0.9016 -1.1931 6 6 4.2040 -1.5348 0.1702 7 7 3.5061 -0.7815 1.2133 8 6 4.2177 -0.1242 2.1503 9 8 3.6477 0.4312 3.0663 10 6 5.7092 -0.0846 2.0646 11 8 6.2554 0.7518 1.3756 12 7 6.4477 -0.9779 2.7525 13 6 5.8016 -2.0602 3.5073 14 6 6.3041 -2.0297 4.9495 15 6 7.8336 -2.0847 4.9558 16 6 8.3298 -2.0857 6.3787 17 1 8.9788 -1.2950 6.7249 18 6 7.9554 -3.0964 7.2386 19 7 7.1648 -4.0591 6.8172 20 14 8.5711 -3.0980 9.0022 21 1 8.1190 -1.8596 9.6856 22 1 8.0282 -4.2824 9.7149 23 1 10.0551 -3.1533 9.0084 24 6 8.3926 -0.8637 4.2218 25 6 7.9139 -0.8842 2.7666 26 6 2.0437 -0.7294 1.2459 27 1 1.6443 -1.7435 1.2637 28 6 1.5880 0.0200 2.4996 29 1 -0.3633 0.5086 0.8930 30 1 -0.3633 0.5192 -0.8869 31 1 -0.3633 -1.0276 -0.0061 32 1 4.4154 -1.4911 -1.9732 33 1 4.3264 0.1152 -1.2056 34 1 5.2759 -1.5216 0.3680 35 1 3.8481 -2.5651 0.1663 36 1 4.7208 -1.9193 3.4954 37 1 6.0520 -3.0204 3.0562 38 1 5.9071 -2.8874 5.4926 39 1 5.9712 -1.1093 5.4294 40 1 8.1663 -2.9936 4.4544 41 1 6.9010 -4.7699 7.4223 42 1 9.4819 -0.8914 4.2468 43 1 8.0404 0.0463 4.7077 44 1 8.3402 -1.7465 2.2539 45 1 8.2264 0.0323 2.2662 46 1 1.9486 1.0478 2.4597 47 1 0.4990 0.0186 2.5481 48 1 1.9917 -0.4726 3.3842 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328439021.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:11 Heat of formation + Delta-G solvation = -50.808213 kcal Electronic energy + Delta-G solvation = -29278.905587 eV Core-core repulsion = 25460.659895 eV Total energy + Delta-G solvation = -3818.245692 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.23371 -39.21578 -37.06827 -36.91044 -34.74198 -33.64681 -31.42954 -31.05332 -30.30186 -29.36269 -26.70647 -25.56479 -24.58540 -23.53015 -22.65833 -22.17650 -21.20223 -19.63839 -18.45114 -17.74115 -17.17866 -16.71625 -16.49234 -16.20900 -15.54512 -15.27909 -15.16772 -14.65329 -14.56264 -14.04283 -13.84181 -13.64929 -13.43405 -13.20399 -13.06386 -12.87650 -12.84259 -12.67986 -12.45466 -12.40127 -12.27571 -12.06768 -11.75855 -11.45194 -11.43550 -11.06630 -10.96392 -10.75345 -10.72972 -10.48954 -10.15425 -10.12645 -9.70402 -9.29405 -9.17985 -9.09603 -8.91749 -8.46012 -8.26679 -7.98304 -6.08584 -4.14583 1.34760 2.10456 2.13950 2.17893 2.59946 3.27448 3.32166 3.33356 3.35555 4.15223 4.22414 4.37216 4.42862 4.59009 4.66602 4.76029 4.86301 5.02547 5.14466 5.20372 5.21919 5.31036 5.37879 5.45438 5.52242 5.57918 5.61534 5.71819 5.75663 5.88320 5.92920 5.97857 6.04481 6.14649 6.26222 6.40494 6.51381 6.69148 6.85412 6.89980 7.01931 7.15087 7.49894 7.62144 7.72529 7.83388 7.93995 8.04253 8.33340 8.88188 9.50912 10.97138 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019909 B = 0.002998 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.087753 B = 9338.500715 C = 9913.903993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.067 4.067 3 H 0.092 0.908 4 S -0.256 6.256 5 C -0.102 4.102 6 C 0.107 3.893 7 N -0.603 5.603 8 C 0.521 3.479 9 O -0.494 6.494 10 C 0.506 3.494 11 O -0.533 6.533 12 N -0.579 5.579 13 C 0.102 3.898 14 C -0.125 4.125 15 C 0.050 3.950 16 C -0.513 4.513 17 H 0.055 0.945 18 C 0.062 3.938 19 N -0.892 5.892 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C -0.125 4.125 25 C 0.110 3.890 26 C 0.147 3.853 27 H 0.092 0.908 28 C -0.138 4.138 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.120 0.880 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.108 0.892 39 H 0.042 0.958 40 H 0.029 0.971 41 H 0.262 0.738 42 H 0.065 0.935 43 H 0.054 0.946 44 H 0.069 0.931 45 H 0.081 0.919 46 H 0.075 0.925 47 H 0.051 0.949 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.128 2.919 -15.389 19.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.197 4.197 3 H 0.111 0.889 4 S -0.028 6.028 5 C -0.251 4.251 6 C -0.018 4.018 7 N -0.338 5.338 8 C 0.305 3.695 9 O -0.367 6.367 10 C 0.288 3.712 11 O -0.410 6.410 12 N -0.312 5.312 13 C -0.019 4.019 14 C -0.163 4.163 15 C 0.031 3.969 16 C -0.552 4.552 17 H 0.073 0.927 18 C -0.139 4.139 19 N -0.531 5.531 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.163 4.163 25 C -0.011 4.011 26 C 0.043 3.957 27 H 0.110 0.890 28 C -0.196 4.196 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.138 0.862 33 H 0.110 0.890 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.126 0.874 39 H 0.061 0.939 40 H 0.047 0.953 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.073 0.927 44 H 0.087 0.913 45 H 0.100 0.900 46 H 0.094 0.906 47 H 0.069 0.931 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.791 3.070 -16.075 20.171 hybrid contribution 1.071 0.422 1.883 2.207 sum -10.720 3.492 -14.192 18.125 Atomic orbital electron populations 1.21629 0.90774 1.03409 1.03217 1.23731 1.00228 1.01692 0.94037 0.88943 1.86873 1.06188 1.77472 1.32265 1.23780 0.94843 1.05868 1.00579 1.21743 0.98447 0.95936 0.85649 1.48015 1.06550 1.50334 1.28945 1.20550 0.88384 0.78529 0.82086 1.90895 1.69020 1.43882 1.32926 1.20208 0.87598 0.82464 0.80924 1.90759 1.71778 1.37587 1.40922 1.48396 1.07878 1.27677 1.47226 1.22061 0.95805 0.88385 0.95671 1.21968 1.00076 1.03288 0.90973 1.18635 0.90960 0.92083 0.95181 1.21139 1.29480 1.08886 0.95647 0.92668 1.24952 0.94996 0.95368 0.98570 1.69809 1.35100 1.12416 1.35737 0.86658 0.79160 0.77450 0.84753 1.20292 1.21278 1.20282 1.22043 1.00208 1.01472 0.92604 1.21869 0.77509 1.02158 0.99606 1.21540 0.78252 1.00662 0.95289 0.88967 1.22385 0.99217 1.02112 0.95931 0.90314 0.91414 0.91289 0.86204 0.88952 0.88593 0.88787 0.91919 0.91088 0.87447 0.93888 0.95308 0.92859 0.91672 0.92719 0.91317 0.90046 0.90650 0.93077 0.90069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.96 8.93 37.16 0.33 -0.63 16 2 C -0.07 -0.64 2.82 -26.61 -0.08 -0.71 16 3 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 4 S -0.26 -2.51 21.66 -107.50 -2.33 -4.84 16 5 C -0.10 -0.94 6.65 37.02 0.25 -0.70 16 6 C 0.11 1.09 6.09 -4.25 -0.03 1.06 16 7 N -0.60 -7.40 2.80 -166.82 -0.47 -7.87 16 8 C 0.52 8.25 5.35 -11.59 -0.06 8.19 16 9 O -0.49 -8.83 12.24 5.50 0.07 -8.76 16 10 C 0.51 8.77 5.36 -11.59 -0.06 8.71 16 11 O -0.53 -10.26 16.53 5.50 0.09 -10.17 16 12 N -0.58 -9.94 2.98 -173.54 -0.52 -10.46 16 13 C 0.10 1.79 6.33 -3.94 -0.02 1.76 16 14 C -0.12 -2.71 5.14 -26.83 -0.14 -2.85 16 15 C 0.05 1.14 2.07 -91.73 -0.19 0.95 16 16 C -0.51 -13.39 8.56 -34.44 -0.29 -13.69 16 17 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 18 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 19 N -0.89 -23.93 11.30 55.43 0.63 -23.31 16 20 Si 0.89 20.63 29.54 -169.99 -5.02 15.61 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 24 C -0.13 -2.45 5.30 -26.61 -0.14 -2.59 16 25 C 0.11 1.86 6.42 -3.71 -0.02 1.84 16 26 C 0.15 1.55 2.83 -67.87 -0.19 1.36 16 27 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 28 C -0.14 -1.58 7.19 37.16 0.27 -1.32 16 29 H 0.08 0.51 6.57 -51.93 -0.34 0.17 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.12 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.10 1.06 6.21 -51.93 -0.32 0.74 16 35 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 1.04 6.31 -51.93 -0.33 0.71 16 37 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.11 2.60 6.03 -51.93 -0.31 2.29 16 39 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 42 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.08 1.36 7.04 -51.93 -0.37 0.99 16 46 H 0.07 1.01 6.66 -51.93 -0.35 0.66 16 47 H 0.05 0.46 6.64 -51.93 -0.34 0.11 16 48 H 0.08 1.11 6.68 -51.93 -0.35 0.76 16 LS Contribution 376.72 15.07 5.68 5.68 Total: -1.00 -29.13 376.72 -10.09 -39.23 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -7.74 Total: 1.95 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: -0.48 Total: 2.94 kcal Atomic # 7 Polarization: -41.28 SS G_CDS: -0.36 Total: -41.63 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: 0.16 Total: -18.93 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: -2.51 SS G_CDS: -2.33 Total: -4.84 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.13 -10.09 -39.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328439021.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.580 kcal (2) G-P(sol) polarization free energy of solvation -29.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds