Wall clock time and date at job start Sat Apr 11 2020 06:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 115.55992 * 2 1 4 4 C 1.52995 * 117.49798 * 145.69075 * 2 1 3 5 5 C 1.52995 * 117.49634 * 214.31452 * 2 1 3 6 6 H 1.09006 * 117.52096 * 359.97438 * 5 2 1 7 7 C 1.50704 * 117.49934 * 145.02340 * 5 2 1 8 8 O 1.21277 * 120.00142 * 0.02562 * 7 5 2 9 9 N 1.34781 * 119.99756 * 180.02562 * 7 5 2 10 10 C 1.48142 * 127.83876 * 359.97438 * 9 7 5 11 11 C 1.54394 * 104.61739 * 219.58738 * 10 9 7 12 12 H 1.08995 * 110.43273 * 217.21992 * 11 10 9 13 13 N 1.46504 * 110.34340 * 95.00478 * 11 10 9 14 14 C 1.34771 * 119.99670 * 89.46028 * 13 11 10 15 15 O 1.21284 * 120.00353 * 0.02562 * 14 13 11 16 16 C 1.50703 * 119.99952 * 179.97438 * 14 13 11 17 17 S 1.80990 * 109.47384 * 180.02562 * 16 14 13 18 18 C 1.76199 * 100.00278 * 180.02562 * 17 16 14 19 19 H 1.08003 * 119.99888 * 359.97438 * 18 17 16 20 20 C 1.38797 * 120.00452 * 179.97438 * 18 17 16 21 21 N 1.31633 * 120.00292 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 119.99660 * 0.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 269.99524 * 22 20 18 24 24 H 1.48503 * 109.47261 * 149.99704 * 22 20 18 25 25 H 1.48500 * 109.47454 * 29.99697 * 22 20 18 26 26 C 1.54289 * 104.95695 * 336.13615 * 11 10 9 27 27 C 1.52999 * 110.33961 * 118.87212 * 26 11 10 28 28 C 1.53003 * 110.33974 * 241.12666 * 26 11 10 29 29 C 1.48151 * 127.83545 * 179.97438 * 9 7 5 30 30 H 1.08994 * 109.47076 * 205.69159 * 1 2 3 31 31 H 1.08998 * 109.47089 * 325.68892 * 1 2 3 32 32 H 1.08998 * 109.46947 * 85.68671 * 1 2 3 33 33 H 1.09002 * 117.49828 * 359.97438 * 4 2 1 34 34 H 1.08997 * 117.51625 * 214.96864 * 4 2 1 35 35 H 1.09003 * 110.40835 * 100.80579 * 10 9 7 36 36 H 1.08996 * 110.41057 * 338.37438 * 10 9 7 37 37 H 0.96994 * 119.99668 * 269.46409 * 13 11 10 38 38 H 1.09001 * 109.47050 * 59.99941 * 16 14 13 39 39 H 1.08999 * 109.47014 * 300.00996 * 16 14 13 40 40 H 0.96997 * 119.99773 * 180.02562 * 21 20 18 41 41 H 1.08998 * 109.47477 * 60.00335 * 27 26 11 42 42 H 1.09004 * 109.46714 * 179.97438 * 27 26 11 43 43 H 1.08995 * 109.47079 * 299.99567 * 27 26 11 44 44 H 1.09003 * 109.47139 * 59.99993 * 28 26 11 45 45 H 1.08998 * 109.47378 * 180.02562 * 28 26 11 46 46 H 1.09000 * 109.47462 * 300.00242 * 28 26 11 47 47 H 1.09002 * 110.40462 * 21.62974 * 29 9 7 48 48 H 1.08993 * 110.40659 * 259.19697 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2365 -1.1210 0.7649 5 6 2.2364 -1.1209 -0.7651 6 1 1.6115 -1.8588 -1.2682 7 6 3.5293 -0.7811 -1.4609 8 8 3.9721 0.3464 -1.4008 9 7 4.1934 -1.7301 -2.1499 10 6 3.8153 -3.1504 -2.3357 11 6 5.1469 -3.9249 -2.2316 12 1 5.1590 -4.7572 -2.9353 13 7 5.3473 -4.4120 -0.8645 14 6 4.8751 -5.6219 -0.5043 15 8 4.2847 -6.3075 -1.3120 16 6 5.0817 -6.1233 0.9017 17 16 4.3397 -7.7653 1.0719 18 6 4.7174 -8.0983 2.7604 19 1 5.2582 -7.3701 3.3466 20 6 4.3199 -9.2965 3.3373 21 7 4.6016 -9.5451 4.5988 22 14 3.3851 -10.5564 2.3233 23 1 1.9266 -10.3028 2.4408 24 1 3.6921 -11.9206 2.8233 25 1 3.7933 -10.4475 0.8996 26 6 6.2360 -2.8957 -2.5992 27 6 7.1961 -2.6950 -1.4250 28 6 7.0022 -3.3532 -3.8421 29 6 5.4671 -1.5896 -2.8934 30 1 -0.3633 -0.9260 0.4455 31 1 -0.3633 0.8488 0.5793 32 1 -0.3633 0.0773 -1.0247 33 1 1.6112 -1.8582 1.2686 34 1 3.1716 -0.8755 1.2682 35 1 3.3652 -3.2987 -3.3173 36 1 3.1291 -3.4670 -1.5502 37 1 5.8197 -3.8638 -0.2187 38 1 4.6107 -5.4367 1.6052 39 1 6.1493 -6.1836 1.1128 40 1 4.3241 -10.3826 5.0018 41 1 7.6725 -3.6439 -1.1788 42 1 7.9589 -1.9665 -1.6999 43 1 6.6412 -2.3317 -0.5601 44 1 6.3108 -3.4534 -4.6788 45 1 7.7673 -2.6171 -4.0887 46 1 7.4746 -4.3153 -3.6440 47 1 6.0271 -0.7285 -2.5286 48 1 5.2749 -1.4941 -3.9620 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335213762.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:19 Heat of formation + Delta-G solvation = -46.593615 kcal Electronic energy + Delta-G solvation = -27950.171469 eV Core-core repulsion = 24132.108536 eV Total energy + Delta-G solvation = -3818.062933 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.00810 -39.60725 -38.32734 -36.77921 -34.37311 -33.48482 -32.46939 -30.21013 -29.21668 -28.46252 -27.39243 -27.09533 -25.64420 -23.94547 -23.07074 -21.03517 -20.46398 -19.70756 -19.11529 -17.93686 -17.47702 -16.84280 -16.52002 -16.15912 -15.59632 -15.05220 -15.00251 -14.69935 -14.55261 -14.04607 -13.99045 -13.85836 -13.64694 -13.34276 -13.23002 -13.10317 -12.84213 -12.70999 -12.64262 -12.40590 -12.25523 -12.07412 -11.96490 -11.66742 -11.38686 -11.31040 -11.28411 -11.04979 -11.03817 -10.63885 -10.61858 -10.35209 -10.01316 -9.89205 -9.60674 -9.34631 -9.03546 -8.80157 -8.54546 -6.95715 -6.31947 -4.04135 2.24749 2.57748 2.71033 2.86818 3.25058 3.30549 3.47042 3.55252 3.60386 3.90221 4.20269 4.29777 4.30731 4.47587 4.50171 4.54730 4.67831 4.74181 4.83160 4.86356 5.05259 5.05581 5.07153 5.19501 5.22201 5.27374 5.35456 5.37597 5.39271 5.46700 5.47850 5.51751 5.53389 5.56526 5.68390 5.70238 5.75125 5.76609 5.80816 5.87506 5.96150 6.01115 6.06143 6.47449 7.24318 7.51498 7.91041 7.91712 8.38597 8.39902 9.14092 10.77325 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010897 B = 0.003129 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.987153 B = 8947.152173 C =10629.592618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 H 0.116 0.884 4 C -0.145 4.145 5 C -0.191 4.191 6 H 0.122 0.878 7 C 0.568 3.432 8 O -0.544 6.544 9 N -0.619 5.619 10 C 0.088 3.912 11 C 0.142 3.858 12 H 0.110 0.890 13 N -0.729 5.729 14 C 0.531 3.469 15 O -0.518 6.518 16 C -0.125 4.125 17 S -0.140 6.140 18 C -0.522 4.522 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C -0.085 4.085 27 C -0.143 4.143 28 C -0.137 4.137 29 C 0.113 3.887 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.108 0.892 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.402 0.598 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.271 0.729 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.058 0.942 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.065 0.935 47 H 0.086 0.914 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.125 18.536 -14.991 23.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.140 4.140 3 H 0.134 0.866 4 C -0.182 4.182 5 C -0.212 4.212 6 H 0.140 0.860 7 C 0.358 3.642 8 O -0.421 6.421 9 N -0.353 5.353 10 C -0.036 4.036 11 C 0.035 3.965 12 H 0.128 0.872 13 N -0.385 5.385 14 C 0.318 3.682 15 O -0.393 6.393 16 C -0.276 4.276 17 S 0.087 5.913 18 C -0.670 4.670 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.516 5.516 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.087 4.087 27 C -0.201 4.201 28 C -0.195 4.195 29 C -0.010 4.010 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.126 0.874 34 H 0.117 0.883 35 H 0.100 0.900 36 H 0.108 0.892 37 H 0.239 0.761 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.077 0.923 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.084 0.916 47 H 0.104 0.896 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.944 17.950 -16.075 24.114 hybrid contribution 0.534 0.215 1.063 1.209 sum -0.410 18.166 -15.011 23.569 Atomic orbital electron populations 1.21409 0.92129 1.02476 1.02135 1.22381 0.95311 0.94881 1.01386 0.86611 1.23130 1.03217 1.01433 0.90441 1.22256 0.97349 1.05414 0.96148 0.85973 1.19307 0.84310 0.83327 0.77255 1.90689 1.68828 1.20629 1.61998 1.48863 1.24263 1.10636 1.51503 1.22971 0.97936 0.79902 1.02814 1.21882 0.92849 0.96317 0.85438 0.87202 1.46286 1.60355 1.19307 1.12599 1.20332 0.77741 0.80411 0.89761 1.90699 1.40015 1.55968 1.52594 1.23282 1.05612 1.03323 0.95349 1.84763 1.75178 1.14252 1.17141 1.22314 1.43231 1.07663 0.93779 0.89413 1.24712 0.94699 0.97295 0.94567 1.69939 1.45051 1.25159 1.11494 0.86740 0.81179 0.81092 0.82846 1.19212 1.19937 1.15925 1.21777 0.95237 0.94321 0.97331 1.21844 0.98604 1.02603 0.97026 1.21848 1.00054 1.01908 0.95685 1.22477 0.84401 0.97768 0.96315 0.92091 0.91623 0.92026 0.87388 0.88262 0.89963 0.89206 0.76061 0.88577 0.88511 0.91918 0.91276 0.91722 0.92312 0.91938 0.91870 0.91594 0.89566 0.90684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.93 10.19 37.16 0.38 -0.55 16 2 C -0.12 -1.13 5.92 -90.62 -0.54 -1.67 16 3 H 0.12 1.22 7.67 -51.93 -0.40 0.82 16 4 C -0.14 -1.38 9.88 -26.73 -0.26 -1.64 16 5 C -0.19 -1.92 5.03 -91.77 -0.46 -2.38 16 6 H 0.12 1.11 7.65 -51.93 -0.40 0.71 16 7 C 0.57 6.79 7.70 -10.98 -0.08 6.71 16 8 O -0.54 -8.19 16.52 5.56 0.09 -8.09 16 9 N -0.62 -6.20 3.32 -169.30 -0.56 -6.76 16 10 C 0.09 0.84 6.53 -2.41 -0.02 0.82 16 11 C 0.14 1.39 3.04 -66.52 -0.20 1.18 16 12 H 0.11 1.19 7.13 -51.93 -0.37 0.82 16 13 N -0.73 -8.40 4.52 -52.44 -0.24 -8.63 16 14 C 0.53 8.58 7.85 -10.99 -0.09 8.49 16 15 O -0.52 -10.12 15.51 5.55 0.09 -10.03 16 16 C -0.13 -2.29 6.16 36.01 0.22 -2.07 16 17 S -0.14 -3.41 18.55 -107.50 -1.99 -5.40 16 18 C -0.52 -14.73 10.04 30.94 0.31 -14.42 16 19 H 0.09 2.59 8.03 -52.48 -0.42 2.17 16 20 C 0.10 2.76 5.50 -17.43 -0.10 2.66 16 21 N -0.88 -26.21 13.97 55.49 0.78 -25.44 16 22 Si 0.86 21.36 27.74 -169.99 -4.71 16.64 16 23 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.24 -5.83 6.74 56.52 0.38 -5.45 16 26 C -0.09 -0.65 1.03 -153.11 -0.16 -0.81 16 27 C -0.14 -1.08 7.10 37.16 0.26 -0.82 16 28 C -0.14 -0.87 8.26 37.16 0.31 -0.56 16 29 C 0.11 0.95 6.14 -2.41 -0.01 0.94 16 30 H 0.06 0.43 7.90 -51.93 -0.41 0.02 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.11 0.95 8.05 -51.93 -0.42 0.53 16 34 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.09 0.96 7.12 -51.93 -0.37 0.59 16 37 H 0.40 4.01 5.92 -40.82 -0.24 3.77 16 38 H 0.10 1.65 8.14 -51.92 -0.42 1.23 16 39 H 0.10 1.66 8.14 -51.92 -0.42 1.24 16 40 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.07 0.54 7.76 -51.93 -0.40 0.14 16 42 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.49 6.98 -51.93 -0.36 0.12 16 44 H 0.06 0.36 8.10 -51.93 -0.42 -0.06 16 45 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.09 0.80 7.60 -51.93 -0.39 0.41 16 48 H 0.07 0.55 7.83 -51.93 -0.41 0.14 16 LS Contribution 400.75 15.07 6.04 6.04 Total: -1.00 -34.07 400.75 -8.93 -43.00 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -7.97 Total: 2.78 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: -0.44 Total: -4.10 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: -0.02 Total: -40.83 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: 0.18 Total: -18.13 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.71 Total: 16.64 kcal Atomic # 16 Polarization: -3.41 SS G_CDS: -1.99 Total: -5.40 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.07 -8.93 -43.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335213762.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.596 kcal (2) G-P(sol) polarization free energy of solvation -34.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds