Wall clock time and date at job start Sat Apr 11 2020 06:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.87293 * 2 1 4 4 C 1.54323 * 109.88013 * 121.17563 * 2 1 3 5 5 H 1.09001 * 110.71846 * 23.25243 * 4 2 1 6 6 N 1.46497 * 110.72247 * 259.97065 * 4 2 1 7 7 C 1.34779 * 119.99848 * 154.99638 * 6 4 2 8 8 O 1.21279 * 120.00024 * 0.02562 * 7 6 4 9 9 C 1.50704 * 119.99626 * 180.02562 * 7 6 4 10 10 S 1.80998 * 109.46954 * 180.02562 * 9 7 6 11 11 C 1.76191 * 100.00065 * 180.02562 * 10 9 7 12 12 H 1.08003 * 120.00317 * 359.97438 * 11 10 9 13 13 C 1.38803 * 119.99974 * 180.02562 * 11 10 9 14 14 N 1.31627 * 120.00327 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99910 * 179.97438 * 13 11 10 16 16 H 1.48508 * 109.46956 * 90.00108 * 15 13 11 17 17 H 1.48501 * 109.47214 * 209.99944 * 15 13 11 18 18 H 1.48497 * 109.47481 * 330.00408 * 15 13 11 19 19 C 1.55157 * 102.94083 * 141.61073 * 4 2 1 20 20 C 1.54910 * 101.58292 * 324.49876 * 19 4 2 21 21 N 1.47023 * 109.88272 * 238.98545 * 2 1 3 22 22 C 1.34779 * 125.65006 * 61.60820 * 21 2 1 23 23 O 1.21276 * 119.99694 * 359.97438 * 22 21 2 24 24 C 1.50696 * 119.99991 * 179.97438 * 22 21 2 25 25 C 1.53006 * 109.47268 * 185.45004 * 24 22 21 26 26 C 1.52997 * 115.55233 * 279.63252 * 25 24 22 27 27 C 1.52995 * 117.49874 * 133.92051 * 25 24 22 28 28 C 1.53001 * 117.49316 * 65.29623 * 25 24 22 29 29 H 1.08997 * 109.47428 * 179.55980 * 1 2 3 30 30 H 1.09000 * 109.46968 * 59.56500 * 1 2 3 31 31 H 1.08998 * 109.47551 * 299.56312 * 1 2 3 32 32 H 0.96997 * 119.99789 * 335.00485 * 6 4 2 33 33 H 1.09000 * 109.47165 * 299.99949 * 9 7 6 34 34 H 1.08997 * 109.47312 * 60.00382 * 9 7 6 35 35 H 0.96999 * 120.00539 * 179.97438 * 14 13 11 36 36 H 1.09005 * 111.00720 * 206.42674 * 19 4 2 37 37 H 1.08999 * 111.00542 * 82.57200 * 19 4 2 38 38 H 1.09006 * 110.36889 * 278.17301 * 20 19 4 39 39 H 1.08997 * 110.36733 * 155.84948 * 20 19 4 40 40 H 1.08995 * 109.47289 * 305.45453 * 24 22 21 41 41 H 1.09003 * 109.47415 * 65.45416 * 24 22 21 42 42 H 1.09000 * 109.47182 * 64.99727 * 26 25 24 43 43 H 1.08997 * 109.47328 * 185.00375 * 26 25 24 44 44 H 1.09005 * 109.46847 * 305.00304 * 26 25 24 45 45 H 1.09007 * 117.49880 * 0.02562 * 27 25 24 46 46 H 1.08994 * 117.49916 * 145.02195 * 27 25 24 47 47 H 1.08996 * 117.50146 * 214.97798 * 28 25 24 48 48 H 1.08998 * 117.50027 * 0.02562 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7513 1.2417 5 1 1.3050 -1.4482 1.6161 6 7 2.4555 0.1928 2.2878 7 6 2.4580 -0.1935 3.5790 8 8 2.1291 -1.3227 3.8749 9 6 2.8697 0.7779 4.6552 10 16 2.7699 -0.0331 6.2702 11 6 3.2888 1.2912 7.3102 12 1 3.5492 2.2464 6.8788 13 6 3.3640 1.1064 8.6838 14 7 3.0471 -0.0580 9.2096 15 14 3.9148 2.5101 9.7863 16 1 2.7314 3.3022 10.2077 17 1 4.5948 1.9597 10.9862 18 1 4.8559 3.3846 9.0415 19 6 3.2876 -1.5152 0.6903 20 6 2.8145 -1.8784 -0.7394 21 7 2.0300 -0.7124 -1.1849 22 6 1.8075 -0.3585 -2.4663 23 8 1.1430 0.6244 -2.7171 24 6 2.3843 -1.1843 -3.5871 25 6 2.1017 -0.4972 -4.9246 26 6 0.6973 -0.7112 -5.4927 27 6 3.2579 -0.3872 -5.9205 28 6 2.7672 0.8571 -5.1775 29 1 -0.3634 -1.0276 -0.0079 30 1 -0.3633 0.5206 -0.8861 31 1 -0.3634 0.5070 0.8938 32 1 2.7188 1.0958 2.0511 33 1 3.8937 1.1058 4.4764 34 1 2.2039 1.6408 4.6398 35 1 3.1000 -0.1873 10.1695 36 1 3.4851 -2.4129 1.2762 37 1 4.1654 -0.8698 0.6592 38 1 2.1885 -2.7705 -0.7168 39 1 3.6716 -2.0319 -1.3950 40 1 3.4611 -1.2823 -3.4493 41 1 1.9261 -2.1734 -3.5828 42 1 -0.0363 -0.2497 -4.8316 43 1 0.6321 -0.2569 -6.4813 44 1 0.4955 -1.7796 -5.5698 45 1 4.2199 -0.8047 -5.6230 46 1 3.0182 -0.4675 -6.9807 47 1 2.2048 1.5954 -5.7489 48 1 3.4067 1.2583 -4.3912 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337983960.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:21 Heat of formation + Delta-G solvation = -52.950695 kcal Electronic energy + Delta-G solvation = -26978.607668 eV Core-core repulsion = 23160.269072 eV Total energy + Delta-G solvation = -3818.338597 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.82385 -39.47775 -38.35241 -37.11916 -34.20630 -32.45189 -31.93768 -31.31189 -29.80638 -28.92971 -28.13166 -25.68791 -25.33379 -23.27815 -22.73898 -21.67067 -20.58986 -19.79677 -18.76764 -17.88159 -17.42752 -16.84070 -16.23953 -15.97469 -15.87673 -15.02660 -14.97094 -14.82649 -14.74108 -14.31289 -14.05332 -13.89823 -13.48100 -13.30580 -13.06786 -13.04144 -12.73322 -12.64949 -12.54577 -12.40689 -12.17840 -12.04039 -11.85967 -11.76596 -11.59166 -11.35674 -11.08348 -11.05223 -11.01466 -10.78057 -10.62309 -10.24345 -9.84998 -9.78970 -9.49039 -9.09954 -9.03793 -8.92034 -8.27355 -6.53018 -6.24068 -3.94860 2.38719 2.47547 2.98747 3.01859 3.20981 3.26552 3.30327 3.44088 3.66543 4.06204 4.18201 4.23214 4.24823 4.39340 4.50151 4.60195 4.71420 4.78416 4.83221 4.89854 5.04860 5.07526 5.11178 5.11946 5.17266 5.25774 5.30764 5.39517 5.45571 5.50158 5.55223 5.60156 5.63382 5.68407 5.72900 5.76414 5.81729 5.84548 5.89814 5.95832 6.03628 6.08508 6.10514 6.52993 7.20640 7.57206 7.59841 7.92503 8.32918 8.51517 9.21467 10.83315 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.030946 B = 0.001819 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.576868 B =15392.933203 C =15565.955024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.131 3.869 3 H 0.080 0.920 4 C 0.141 3.859 5 H 0.108 0.892 6 N -0.730 5.730 7 C 0.536 3.464 8 O -0.514 6.514 9 C -0.154 4.154 10 S -0.059 6.059 11 C -0.536 4.536 12 H 0.073 0.927 13 C 0.074 3.926 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.272 1.272 19 C -0.147 4.147 20 C 0.099 3.901 21 N -0.617 5.617 22 C 0.530 3.470 23 O -0.527 6.527 24 C -0.100 4.100 25 C -0.112 4.112 26 C -0.112 4.112 27 C -0.178 4.178 28 C -0.156 4.156 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.400 0.600 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.269 0.731 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.098 0.902 42 H 0.067 0.933 43 H 0.055 0.945 44 H 0.056 0.944 45 H 0.093 0.907 46 H 0.095 0.905 47 H 0.094 0.906 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.054 -2.377 -29.421 29.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.027 3.973 3 H 0.098 0.902 4 C 0.034 3.966 5 H 0.126 0.874 6 N -0.384 5.384 7 C 0.322 3.678 8 O -0.388 6.388 9 C -0.305 4.305 10 S 0.168 5.832 11 C -0.684 4.684 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.203 1.203 17 H -0.207 1.207 18 H -0.197 1.197 19 C -0.186 4.186 20 C -0.024 4.024 21 N -0.353 5.353 22 C 0.319 3.681 23 O -0.403 6.403 24 C -0.140 4.140 25 C -0.113 4.113 26 C -0.170 4.170 27 C -0.215 4.215 28 C -0.193 4.193 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.234 0.766 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.078 0.922 36 H 0.112 0.888 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.110 0.890 41 H 0.117 0.883 42 H 0.086 0.914 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.111 0.889 46 H 0.113 0.887 47 H 0.112 0.888 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.005 -3.819 -28.971 29.239 hybrid contribution 0.997 2.568 0.359 2.778 sum -0.008 -1.251 -28.611 28.639 Atomic orbital electron populations 1.22124 0.93928 1.02609 1.03282 1.21682 0.95214 0.96335 0.84030 0.90237 1.21916 0.96773 0.91482 0.86419 0.87367 1.45950 1.70859 1.15692 1.05906 1.20332 0.76396 0.88665 0.82360 1.90703 1.45898 1.20428 1.81781 1.23539 1.04229 1.01844 1.00859 1.85381 1.88358 1.18390 0.91111 1.22866 1.52414 0.99326 0.93837 0.90906 1.24991 0.94886 0.96536 0.97143 1.70010 1.45257 1.22476 1.12521 0.86169 0.78795 0.81051 0.79491 1.20255 1.20738 1.19698 1.23259 0.98589 1.02202 0.94578 1.22381 0.95342 0.88836 0.95830 1.48586 1.53048 1.28724 1.04946 1.20303 0.80475 0.85428 0.81867 1.90698 1.39275 1.27286 1.82998 1.21206 1.02143 0.99414 0.91219 1.21051 0.94625 1.00929 0.94677 1.21296 0.94016 1.01307 1.00338 1.23183 0.97796 1.02854 0.97647 1.22878 1.02975 0.90875 1.02599 0.92301 0.91000 0.91277 0.76590 0.89145 0.89113 0.92161 0.88826 0.90064 0.90759 0.90252 0.89025 0.88344 0.91397 0.92562 0.92531 0.88889 0.88695 0.88772 0.89171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 9.10 37.16 0.34 -1.34 16 2 C 0.13 1.30 3.21 -66.95 -0.21 1.08 16 3 H 0.08 0.82 7.72 -51.93 -0.40 0.41 16 4 C 0.14 1.52 2.84 -66.10 -0.19 1.33 16 5 H 0.11 1.36 7.26 -51.93 -0.38 0.98 16 6 N -0.73 -8.99 5.18 -52.03 -0.27 -9.25 16 7 C 0.54 9.35 7.85 -10.98 -0.09 9.27 16 8 O -0.51 -10.94 15.51 5.56 0.09 -10.85 16 9 C -0.15 -2.98 6.16 36.01 0.22 -2.76 16 10 S -0.06 -1.56 20.57 -107.50 -2.21 -3.78 16 11 C -0.54 -15.07 9.50 30.94 0.29 -14.77 16 12 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 13 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 14 N -0.87 -25.87 13.22 55.49 0.73 -25.14 16 15 Si 0.92 21.22 29.55 -169.99 -5.02 16.19 16 16 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 18 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 19 C -0.15 -1.30 6.77 -24.58 -0.17 -1.47 16 20 C 0.10 0.68 6.69 -2.53 -0.02 0.66 16 21 N -0.62 -5.49 3.07 -163.02 -0.50 -5.99 16 22 C 0.53 5.18 7.50 -10.99 -0.08 5.09 16 23 O -0.53 -6.83 13.99 5.56 0.08 -6.76 16 24 C -0.10 -0.68 4.75 -27.88 -0.13 -0.81 16 25 C -0.11 -0.84 1.59 -154.51 -0.25 -1.08 16 26 C -0.11 -0.82 9.66 37.16 0.36 -0.47 16 27 C -0.18 -1.09 9.87 -26.73 -0.26 -1.36 16 28 C -0.16 -1.24 9.19 -26.73 -0.25 -1.49 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.83 6.88 -51.93 -0.36 0.48 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.40 3.93 8.37 -40.82 -0.34 3.59 16 33 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 34 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 35 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.39 7.31 -51.93 -0.38 0.01 16 40 H 0.09 0.49 7.40 -51.93 -0.38 0.10 16 41 H 0.10 0.53 8.13 -51.93 -0.42 0.11 16 42 H 0.07 0.62 7.60 -51.93 -0.39 0.23 16 43 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 44 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 45 H 0.09 0.49 8.08 -51.93 -0.42 0.07 16 46 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 405.09 15.07 6.10 6.10 Total: -1.00 -34.66 405.09 -9.62 -44.27 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -8.09 Total: 1.32 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -0.52 Total: -6.13 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: -0.04 Total: -40.39 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: 0.16 Total: -17.61 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.66 -9.62 -44.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337983960.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.676 kcal (2) G-P(sol) polarization free energy of solvation -34.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds