Wall clock time and date at job start Sat Apr 11 2020 06:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.87293 * 2 1 4 4 C 1.54323 * 109.88013 * 121.17563 * 2 1 3 5 5 H 1.09001 * 110.71846 * 23.25243 * 4 2 1 6 6 N 1.46497 * 110.72247 * 259.97065 * 4 2 1 7 7 C 1.34779 * 119.99848 * 154.99638 * 6 4 2 8 8 O 1.21279 * 120.00024 * 0.02562 * 7 6 4 9 9 C 1.50704 * 119.99626 * 180.02562 * 7 6 4 10 10 S 1.80998 * 109.46954 * 180.02562 * 9 7 6 11 11 C 1.76191 * 100.00065 * 180.02562 * 10 9 7 12 12 H 1.08003 * 120.00317 * 359.97438 * 11 10 9 13 13 C 1.38803 * 119.99974 * 180.02562 * 11 10 9 14 14 N 1.31627 * 120.00327 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99910 * 179.97438 * 13 11 10 16 16 H 1.48508 * 109.46956 * 90.00108 * 15 13 11 17 17 H 1.48501 * 109.47214 * 209.99944 * 15 13 11 18 18 H 1.48497 * 109.47481 * 330.00408 * 15 13 11 19 19 C 1.55157 * 102.94083 * 141.61073 * 4 2 1 20 20 C 1.54910 * 101.58292 * 324.49876 * 19 4 2 21 21 N 1.47023 * 109.88272 * 238.98545 * 2 1 3 22 22 C 1.34779 * 125.65006 * 61.60820 * 21 2 1 23 23 O 1.21276 * 119.99694 * 359.97438 * 22 21 2 24 24 C 1.50696 * 119.99991 * 179.97438 * 22 21 2 25 25 C 1.53006 * 109.47268 * 185.45004 * 24 22 21 26 26 C 1.52997 * 115.55233 * 279.63252 * 25 24 22 27 27 C 1.52995 * 117.49874 * 133.92051 * 25 24 22 28 28 C 1.53001 * 117.49316 * 65.29623 * 25 24 22 29 29 H 1.08997 * 109.47428 * 179.55980 * 1 2 3 30 30 H 1.09000 * 109.46968 * 59.56500 * 1 2 3 31 31 H 1.08998 * 109.47551 * 299.56312 * 1 2 3 32 32 H 0.96997 * 119.99789 * 335.00485 * 6 4 2 33 33 H 1.09000 * 109.47165 * 299.99949 * 9 7 6 34 34 H 1.08997 * 109.47312 * 60.00382 * 9 7 6 35 35 H 0.96999 * 120.00539 * 179.97438 * 14 13 11 36 36 H 1.09005 * 111.00720 * 206.42674 * 19 4 2 37 37 H 1.08999 * 111.00542 * 82.57200 * 19 4 2 38 38 H 1.09006 * 110.36889 * 278.17301 * 20 19 4 39 39 H 1.08997 * 110.36733 * 155.84948 * 20 19 4 40 40 H 1.08995 * 109.47289 * 305.45453 * 24 22 21 41 41 H 1.09003 * 109.47415 * 65.45416 * 24 22 21 42 42 H 1.09000 * 109.47182 * 64.99727 * 26 25 24 43 43 H 1.08997 * 109.47328 * 185.00375 * 26 25 24 44 44 H 1.09005 * 109.46847 * 305.00304 * 26 25 24 45 45 H 1.09007 * 117.49880 * 0.02562 * 27 25 24 46 46 H 1.08994 * 117.49916 * 145.02195 * 27 25 24 47 47 H 1.08996 * 117.50146 * 214.97798 * 28 25 24 48 48 H 1.08998 * 117.50027 * 0.02562 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7513 1.2417 5 1 1.3050 -1.4482 1.6161 6 7 2.4555 0.1928 2.2878 7 6 2.4580 -0.1935 3.5790 8 8 2.1291 -1.3227 3.8749 9 6 2.8697 0.7779 4.6552 10 16 2.7699 -0.0331 6.2702 11 6 3.2888 1.2912 7.3102 12 1 3.5492 2.2464 6.8788 13 6 3.3640 1.1064 8.6838 14 7 3.0471 -0.0580 9.2096 15 14 3.9148 2.5101 9.7863 16 1 2.7314 3.3022 10.2077 17 1 4.5948 1.9597 10.9862 18 1 4.8559 3.3846 9.0415 19 6 3.2876 -1.5152 0.6903 20 6 2.8145 -1.8784 -0.7394 21 7 2.0300 -0.7124 -1.1849 22 6 1.8075 -0.3585 -2.4663 23 8 1.1430 0.6244 -2.7171 24 6 2.3843 -1.1843 -3.5871 25 6 2.1017 -0.4972 -4.9246 26 6 0.6973 -0.7112 -5.4927 27 6 3.2579 -0.3872 -5.9205 28 6 2.7672 0.8571 -5.1775 29 1 -0.3634 -1.0276 -0.0079 30 1 -0.3633 0.5206 -0.8861 31 1 -0.3634 0.5070 0.8938 32 1 2.7188 1.0958 2.0511 33 1 3.8937 1.1058 4.4764 34 1 2.2039 1.6408 4.6398 35 1 3.1000 -0.1873 10.1695 36 1 3.4851 -2.4129 1.2762 37 1 4.1654 -0.8698 0.6592 38 1 2.1885 -2.7705 -0.7168 39 1 3.6716 -2.0319 -1.3950 40 1 3.4611 -1.2823 -3.4493 41 1 1.9261 -2.1734 -3.5828 42 1 -0.0363 -0.2497 -4.8316 43 1 0.6321 -0.2569 -6.4813 44 1 0.4955 -1.7796 -5.5698 45 1 4.2199 -0.8047 -5.6230 46 1 3.0182 -0.4675 -6.9807 47 1 2.2048 1.5954 -5.7489 48 1 3.4067 1.2583 -4.3912 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337983960.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:20 Heat of formation + Delta-G solvation = -75.121315 kcal Electronic energy + Delta-G solvation = -26979.569059 eV Core-core repulsion = 23160.269072 eV Total energy + Delta-G solvation = -3819.299987 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.64042 -40.57346 -39.20013 -37.90899 -35.32062 -34.57975 -32.80801 -32.21132 -30.74011 -29.91903 -28.77544 -27.67831 -26.36875 -24.01255 -23.26492 -22.58388 -21.77063 -20.57755 -19.79079 -19.39920 -18.27363 -17.95117 -17.27100 -16.94224 -16.87402 -16.62719 -16.36843 -15.89355 -15.67838 -15.30862 -14.99294 -14.82510 -14.77653 -14.44976 -14.14355 -13.95007 -13.70013 -13.56929 -13.47090 -13.16694 -13.15492 -13.02633 -12.89398 -12.84013 -12.63272 -12.60826 -12.35532 -12.25935 -12.13636 -11.83085 -11.71089 -11.21191 -11.14154 -10.99140 -10.85530 -10.44222 -10.27323 -10.13451 -9.69756 -8.65459 -8.34568 -6.11929 1.25329 1.42270 1.45201 1.55405 1.58631 1.67844 1.81183 2.26879 2.34415 2.89100 2.99690 3.27525 3.32599 3.51992 3.70112 3.84922 3.88859 3.91080 3.94633 4.08570 4.13832 4.17011 4.24403 4.27788 4.31833 4.52260 4.53716 4.57962 4.66037 4.71264 4.73191 4.82468 4.88768 4.96516 5.00520 5.02464 5.07385 5.07876 5.15048 5.16763 5.28522 5.29816 5.39879 5.42461 5.46724 6.20079 6.42573 6.52785 7.07143 7.19548 7.21168 8.74450 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.030946 B = 0.001819 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.576868 B =15392.933203 C =15565.955024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.137 3.863 3 H 0.078 0.922 4 C 0.139 3.861 5 H 0.091 0.909 6 N -0.706 5.706 7 C 0.542 3.458 8 O -0.558 6.558 9 C -0.132 4.132 10 S -0.146 6.146 11 C -0.547 4.547 12 H 0.082 0.918 13 C 0.014 3.986 14 N -0.910 5.910 15 Si 0.997 3.003 16 H -0.269 1.269 17 H -0.278 1.278 18 H -0.259 1.259 19 C -0.143 4.143 20 C 0.103 3.897 21 N -0.616 5.616 22 C 0.526 3.474 23 O -0.566 6.566 24 C -0.095 4.095 25 C -0.123 4.123 26 C -0.111 4.111 27 C -0.156 4.156 28 C -0.175 4.175 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.415 0.585 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.271 0.729 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.110 0.890 40 H 0.114 0.886 41 H 0.118 0.882 42 H 0.043 0.957 43 H 0.059 0.941 44 H 0.070 0.930 45 H 0.108 0.892 46 H 0.103 0.897 47 H 0.084 0.916 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.498 -1.913 -31.208 31.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.033 3.967 3 H 0.096 0.904 4 C 0.033 3.967 5 H 0.109 0.891 6 N -0.360 5.360 7 C 0.328 3.672 8 O -0.435 6.435 9 C -0.283 4.283 10 S 0.081 5.919 11 C -0.695 4.695 12 H 0.100 0.900 13 C -0.191 4.191 14 N -0.547 5.547 15 Si 0.818 3.182 16 H -0.194 1.194 17 H -0.203 1.203 18 H -0.183 1.183 19 C -0.182 4.182 20 C -0.019 4.019 21 N -0.351 5.351 22 C 0.316 3.684 23 O -0.444 6.444 24 C -0.134 4.134 25 C -0.124 4.124 26 C -0.168 4.168 27 C -0.193 4.193 28 C -0.213 4.213 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.252 0.748 33 H 0.129 0.871 34 H 0.126 0.874 35 H 0.080 0.920 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.128 0.872 40 H 0.132 0.868 41 H 0.136 0.864 42 H 0.062 0.938 43 H 0.078 0.922 44 H 0.088 0.912 45 H 0.127 0.873 46 H 0.121 0.879 47 H 0.103 0.897 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.564 -3.344 -30.809 30.995 hybrid contribution 0.469 2.438 0.779 2.602 sum 1.032 -0.905 -30.030 30.061 Atomic orbital electron populations 1.22053 0.94486 1.02434 1.02421 1.21511 0.94685 0.96310 0.84223 0.90368 1.21979 0.97696 0.91108 0.85938 0.89082 1.45666 1.69071 1.16731 1.04483 1.19965 0.76237 0.87566 0.83464 1.90696 1.48226 1.21987 1.82615 1.23383 1.06033 1.01895 0.96980 1.85523 1.88774 1.21076 0.96516 1.23210 1.52259 0.99570 0.94485 0.89990 1.26096 0.94724 0.99390 0.98854 1.70170 1.46578 1.24942 1.12964 0.84982 0.78628 0.77388 0.77160 1.19437 1.20273 1.18255 1.23212 0.97627 1.01638 0.95680 1.22522 0.96341 0.88208 0.94819 1.48636 1.52925 1.29095 1.04462 1.20904 0.79851 0.85167 0.82436 1.90689 1.41063 1.29126 1.83543 1.21268 1.03404 0.99401 0.89346 1.21168 0.95022 1.00539 0.95623 1.21270 0.93620 1.01975 0.99935 1.23242 0.97751 1.00527 0.97755 1.22846 1.03752 0.91487 1.03178 0.92140 0.92332 0.91591 0.74769 0.87133 0.87370 0.91994 0.89482 0.89456 0.89530 0.87217 0.86791 0.86401 0.93836 0.92186 0.91151 0.87342 0.87850 0.89712 0.90127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.20 9.10 71.98 0.66 -2.55 16 2 C 0.14 2.55 3.21 45.34 0.15 2.70 16 3 H 0.08 1.50 7.72 -2.39 -0.02 1.48 16 4 C 0.14 2.83 2.84 46.18 0.13 2.96 16 5 H 0.09 2.26 7.26 -2.39 -0.02 2.24 16 6 N -0.71 -16.42 5.18 -436.92 -2.26 -18.68 16 7 C 0.54 18.63 7.85 87.66 0.69 19.31 16 8 O -0.56 -24.10 15.51 -3.03 -0.05 -24.15 16 9 C -0.13 -5.00 6.16 71.24 0.44 -4.56 16 10 S -0.15 -7.92 20.57 -56.49 -1.16 -9.08 16 11 C -0.55 -30.85 9.50 67.96 0.65 -30.21 16 12 H 0.08 4.29 7.80 -2.91 -0.02 4.27 16 13 C 0.01 0.80 5.49 84.86 0.47 1.27 16 14 N -0.91 -55.33 13.22 21.65 0.29 -55.04 16 15 Si 1.00 43.24 29.55 68.60 2.03 45.27 16 16 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 17 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 18 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 19 C -0.14 -2.22 6.77 31.99 0.22 -2.01 16 20 C 0.10 1.09 6.69 86.86 0.58 1.68 16 21 N -0.62 -9.72 3.07 -788.06 -2.42 -12.14 16 22 C 0.53 9.42 7.50 87.66 0.66 10.07 16 23 O -0.57 -14.56 13.99 -3.02 -0.04 -14.60 16 24 C -0.09 -1.02 4.75 29.85 0.14 -0.88 16 25 C -0.12 -1.61 1.59 -52.18 -0.08 -1.69 16 26 C -0.11 -1.51 9.66 71.98 0.70 -0.82 16 27 C -0.16 -1.51 9.87 30.59 0.30 -1.21 16 28 C -0.18 -2.63 9.19 30.60 0.28 -2.35 16 29 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.06 1.38 6.88 -2.39 -0.02 1.36 16 31 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.42 7.28 8.37 -92.71 -0.78 6.50 16 33 H 0.11 3.76 8.14 -2.40 -0.02 3.74 16 34 H 0.11 3.73 8.14 -2.40 -0.02 3.72 16 35 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 36 H 0.09 1.53 8.14 -2.38 -0.02 1.52 16 37 H 0.09 1.28 8.14 -2.39 -0.02 1.27 16 38 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 39 H 0.11 0.57 7.31 -2.39 -0.02 0.56 16 40 H 0.11 0.73 7.40 -2.39 -0.02 0.71 16 41 H 0.12 0.84 8.13 -2.39 -0.02 0.82 16 42 H 0.04 0.80 7.60 -2.39 -0.02 0.78 16 43 H 0.06 0.74 8.09 -2.39 -0.02 0.72 16 44 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 45 H 0.11 0.74 8.08 -2.38 -0.02 0.72 16 46 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 47 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 48 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -78.20 405.09 2.52 -75.68 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: 0.17 Total: 21.02 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: 5.96 Total: -8.28 kcal Atomic # 7 Polarization: -81.46 SS G_CDS: -4.39 Total: -85.86 kcal Atomic # 8 Polarization: -38.66 SS G_CDS: -0.09 Total: -38.75 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Atomic # 16 Polarization: -7.92 SS G_CDS: -1.16 Total: -9.08 kcal Total: -78.20 2.52 -75.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337983960.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.561 kcal (2) G-P(sol) polarization free energy of solvation -78.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds